Wall clock time and date at job start Tue Mar 31 2020 19:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99857 * 2 1 4 4 C 1.52999 * 109.47031 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47067 * 179.97438 * 4 3 2 6 6 C 1.35035 * 124.88719 * 124.99446 * 5 4 3 7 7 C 1.35356 * 107.23154 * 179.97438 * 6 5 4 8 8 C 1.41503 * 105.50727 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.52111 * 179.97438 * 8 7 6 10 10 O 1.21569 * 119.99849 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99718 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99745 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.81616 * 31.67230 * 12 11 9 14 14 C 1.54882 * 110.76078 * 268.33148 * 12 11 9 15 15 C 1.54268 * 104.19992 * 203.74310 * 14 12 11 16 16 C 1.53876 * 106.59607 * 23.60931 * 15 14 12 17 17 H 1.08998 * 110.03805 * 240.71854 * 16 15 14 18 18 C 1.52997 * 110.07602 * 119.30643 * 16 15 14 19 19 N 1.46498 * 109.47114 * 67.80599 * 18 16 15 20 20 C 1.36939 * 120.00298 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00007 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99927 * 180.02562 * 20 19 18 23 23 N 1.31610 * 120.00296 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99672 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47143 * 60.00196 * 24 22 20 26 26 H 1.48494 * 109.46860 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47166 * 299.99967 * 24 22 20 28 28 C 1.54268 * 106.59992 * 0.02562 * 16 15 14 29 29 N 1.28474 * 124.88567 * 305.24831 * 5 4 3 30 30 H 1.09001 * 109.46818 * 299.99424 * 1 2 3 31 31 H 1.08997 * 109.47397 * 59.99981 * 1 2 3 32 32 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46746 * 60.00151 * 3 2 1 34 34 H 1.08997 * 109.46881 * 300.00309 * 3 2 1 35 35 H 1.09001 * 109.47125 * 59.99878 * 4 3 2 36 36 H 1.09002 * 109.46745 * 299.99958 * 4 3 2 37 37 H 1.08004 * 126.38063 * 359.97438 * 6 5 4 38 38 H 1.08004 * 127.24886 * 180.02562 * 7 6 5 39 39 H 0.97000 * 120.00314 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.48391 * 322.42058 * 14 12 11 41 41 H 1.09004 * 110.48801 * 85.06599 * 14 12 11 42 42 H 1.08994 * 110.03288 * 264.32894 * 15 14 12 43 43 H 1.08998 * 110.03249 * 142.88896 * 15 14 12 44 44 H 1.09000 * 109.47702 * 187.81170 * 18 16 15 45 45 H 1.09006 * 109.47041 * 307.80999 * 18 16 15 46 46 H 0.97004 * 120.00267 * 0.02562 * 19 18 16 47 47 H 0.96998 * 120.00255 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.49069 * 217.71506 * 28 16 15 49 49 H 1.08999 * 110.60474 * 95.12333 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5231 -0.0013 6 6 5.0261 2.9705 0.9056 7 6 5.3359 4.2443 0.5685 8 6 4.5728 4.5255 -0.5895 9 6 4.5579 5.7941 -1.3458 10 8 5.2501 6.7257 -0.9839 11 7 3.7769 5.9188 -2.4371 12 6 3.7617 7.1773 -3.1869 13 1 4.7331 7.6694 -3.1375 14 6 2.6445 8.1142 -2.6644 15 6 2.3447 9.0469 -3.8561 16 6 2.7892 8.2967 -5.1240 17 1 3.5676 8.8606 -5.6380 18 6 1.5940 8.0854 -6.0554 19 7 1.1522 9.3783 -6.5840 20 6 0.0899 9.4388 -7.4459 21 1 -0.4226 8.5335 -7.7358 22 6 -0.3284 10.6639 -7.9471 23 7 0.2964 11.7673 -7.5943 24 14 -1.7780 10.7465 -9.1224 25 1 -2.9872 10.1998 -8.4560 26 1 -2.0223 12.1594 -9.5085 27 1 -1.4772 9.9460 -10.3364 28 6 3.3431 6.9342 -4.6585 29 7 3.8741 3.4415 -0.8620 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8567 0.6440 -0.8909 36 1 3.8574 0.6437 0.8891 37 1 5.4210 2.4154 1.7437 38 1 6.0213 4.9067 1.0764 39 1 3.2249 5.1754 -2.7261 40 1 1.7579 7.5389 -2.3978 41 1 2.9984 8.6899 -1.8091 42 1 2.9073 9.9748 -3.7548 43 1 1.2769 9.2603 -3.9037 44 1 1.8867 7.4363 -6.8807 45 1 0.7783 7.6219 -5.5004 46 1 1.6127 10.1916 -6.3240 47 1 0.0040 12.6233 -7.9443 48 1 4.2073 6.6486 -5.2583 49 1 2.5709 6.1670 -4.7143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486206877.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:51 Heat of formation + Delta-G solvation = 1.402548 kcal Electronic energy + Delta-G solvation = -28117.910007 eV Core-core repulsion = 24081.924275 eV Total energy + Delta-G solvation = -4035.985731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.03963 -39.75185 -38.57986 -37.91157 -34.78490 -34.43909 -33.35567 -31.26209 -30.89542 -29.98304 -28.69206 -27.77559 -26.84495 -24.90591 -24.12060 -22.66181 -22.15494 -21.80020 -20.56152 -20.26480 -19.06405 -18.27700 -17.38281 -17.03018 -16.86099 -16.57299 -16.18570 -16.02934 -15.49568 -15.28298 -14.66027 -14.60325 -14.30799 -14.16821 -13.76013 -13.53833 -13.36276 -13.24860 -13.02991 -12.73044 -12.61613 -12.25638 -11.98605 -11.94207 -11.77669 -11.42318 -11.24678 -11.05534 -10.82157 -10.71893 -10.47113 -10.35868 -10.31583 -10.20427 -10.06941 -9.83129 -9.65462 -9.62040 -9.44721 -8.98177 -8.81784 -6.86373 -5.71805 -2.99989 1.27389 1.77537 1.85163 3.04390 3.22779 3.30087 3.46562 3.50640 3.51972 3.89815 4.20674 4.33958 4.40696 4.53943 4.62506 4.71791 4.76660 4.80311 4.87247 4.94558 4.98787 5.09964 5.12677 5.14550 5.31560 5.42997 5.57912 5.61145 5.68524 5.70222 5.76116 5.91480 6.00006 6.03662 6.19984 6.23519 6.28934 6.34521 6.39657 6.41847 6.52040 6.64050 6.74004 6.89212 7.00845 7.33985 7.62033 7.73282 8.14393 8.47466 9.58283 10.17899 10.52671 11.51087 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.002009 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.856514 B =13931.547212 C =15810.422822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.282 5.282 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.011 4.011 9 C 0.603 3.397 10 O -0.533 6.533 11 N -0.707 5.707 12 C 0.137 3.863 13 H 0.098 0.902 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.095 4.095 17 H 0.075 0.925 18 C 0.161 3.839 19 N -0.732 5.732 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.120 4.120 29 N -0.262 5.262 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.405 0.595 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.018 0.982 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.069 0.931 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 -25.031 20.752 33.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.157 4.157 7 C -0.205 4.205 8 C -0.172 4.172 9 C 0.387 3.613 10 O -0.407 6.407 11 N -0.357 5.357 12 C 0.033 3.967 13 H 0.116 0.884 14 C -0.170 4.170 15 C -0.153 4.153 16 C -0.115 4.115 17 H 0.093 0.907 18 C 0.033 3.967 19 N -0.376 5.376 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.159 4.159 29 N -0.097 5.097 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.201 0.799 38 H 0.182 0.818 39 H 0.240 0.760 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.034 0.966 45 H 0.036 0.964 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.626 -25.118 20.141 33.086 hybrid contribution -0.625 0.440 -0.096 0.770 sum 7.002 -24.678 20.044 32.554 Atomic orbital electron populations 1.22814 0.79567 1.03293 1.00646 1.87769 1.20876 1.26568 1.95651 1.22646 0.92030 0.85738 1.02458 1.21695 0.93179 0.78439 1.06285 1.45314 1.31184 1.11441 1.19259 1.22900 0.97906 0.96629 0.98305 1.21816 1.04509 0.95963 0.98217 1.22047 1.01444 0.94078 0.99591 1.16887 0.79667 0.84765 0.79963 1.90803 1.42604 1.39286 1.68056 1.45896 1.45037 1.16888 1.27908 1.22142 1.00296 0.83594 0.90653 0.88364 1.22740 0.97928 0.97731 0.98634 1.22125 1.02807 0.97702 0.92635 1.21867 0.98648 0.94543 0.96397 0.90679 1.20736 0.92596 0.89719 0.93640 1.42368 1.37356 1.03111 1.54797 1.19187 1.06281 0.92836 1.18676 0.91355 1.24737 0.99810 0.95482 1.01080 1.69646 1.42832 0.97361 1.48396 0.86271 0.82502 0.76479 0.80955 1.21349 1.21718 1.21327 1.22613 1.00832 0.98590 0.93844 1.73483 1.22627 0.97748 1.15886 0.93715 0.93391 0.89026 0.92428 0.91133 0.87788 0.86886 0.79912 0.81819 0.75974 0.91603 0.91587 0.91854 0.90353 0.96582 0.96376 0.78196 0.93506 0.91203 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.53 10.70 -35.23 -0.38 -2.91 16 3 C 0.05 0.28 6.04 37.16 0.22 0.51 16 4 C 0.12 0.58 6.77 -4.04 -0.03 0.56 16 5 N -0.28 -2.11 3.41 -61.33 -0.21 -2.32 16 6 C -0.02 -0.10 11.40 -17.17 -0.20 -0.30 16 7 C -0.18 -1.67 10.81 -39.37 -0.43 -2.09 16 8 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 9 C 0.60 8.18 7.82 -12.39 -0.10 8.09 16 10 O -0.53 -8.83 16.57 5.30 0.09 -8.74 16 11 N -0.71 -8.56 5.18 -52.85 -0.27 -8.83 16 12 C 0.14 1.80 3.27 -65.93 -0.22 1.59 16 13 H 0.10 1.40 7.55 -51.93 -0.39 1.01 16 14 C -0.13 -1.84 6.51 -25.07 -0.16 -2.00 16 15 C -0.11 -1.84 6.19 -25.61 -0.16 -2.00 16 16 C -0.10 -1.56 2.96 -89.50 -0.26 -1.82 16 17 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 18 C 0.16 3.26 5.27 -4.04 -0.02 3.24 16 19 N -0.73 -18.80 5.39 -59.91 -0.32 -19.13 16 20 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 24 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C -0.12 -1.57 5.98 -25.05 -0.15 -1.72 16 29 N -0.26 -2.65 11.35 33.42 0.38 -2.27 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.24 8.04 -51.93 -0.42 -0.17 16 37 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 38 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.41 4.27 8.29 -40.82 -0.34 3.93 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.43 7.62 -51.93 -0.40 1.04 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.36 7.55 -40.82 -0.31 10.06 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.07 0.89 7.73 -51.93 -0.40 0.49 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -34.95 408.01 -8.22 -43.17 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.14 Total: 8.00 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.22 Total: -2.89 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.30 Total: -60.46 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.29 Total: -11.65 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.95 -8.22 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206877.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.576 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds