Wall clock time and date at job start Tue Mar 31 2020 19:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99857 * 2 1 4 4 C 1.52999 * 109.47031 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47067 * 179.97438 * 4 3 2 6 6 C 1.35035 * 124.88719 * 124.99446 * 5 4 3 7 7 C 1.35356 * 107.23154 * 179.97438 * 6 5 4 8 8 C 1.41503 * 105.50727 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.52111 * 179.97438 * 8 7 6 10 10 O 1.21569 * 119.99849 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99718 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99745 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.81616 * 31.67230 * 12 11 9 14 14 C 1.54882 * 110.76078 * 268.33148 * 12 11 9 15 15 C 1.54268 * 104.19992 * 203.74310 * 14 12 11 16 16 C 1.53876 * 106.59607 * 23.60931 * 15 14 12 17 17 H 1.08998 * 110.03805 * 240.71854 * 16 15 14 18 18 C 1.52997 * 110.07602 * 119.30643 * 16 15 14 19 19 N 1.46498 * 109.47114 * 67.80599 * 18 16 15 20 20 C 1.36939 * 120.00298 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00007 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99927 * 180.02562 * 20 19 18 23 23 N 1.31610 * 120.00296 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99672 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47143 * 60.00196 * 24 22 20 26 26 H 1.48494 * 109.46860 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47166 * 299.99967 * 24 22 20 28 28 C 1.54268 * 106.59992 * 0.02562 * 16 15 14 29 29 N 1.28474 * 124.88567 * 305.24831 * 5 4 3 30 30 H 1.09001 * 109.46818 * 299.99424 * 1 2 3 31 31 H 1.08997 * 109.47397 * 59.99981 * 1 2 3 32 32 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46746 * 60.00151 * 3 2 1 34 34 H 1.08997 * 109.46881 * 300.00309 * 3 2 1 35 35 H 1.09001 * 109.47125 * 59.99878 * 4 3 2 36 36 H 1.09002 * 109.46745 * 299.99958 * 4 3 2 37 37 H 1.08004 * 126.38063 * 359.97438 * 6 5 4 38 38 H 1.08004 * 127.24886 * 180.02562 * 7 6 5 39 39 H 0.97000 * 120.00314 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.48391 * 322.42058 * 14 12 11 41 41 H 1.09004 * 110.48801 * 85.06599 * 14 12 11 42 42 H 1.08994 * 110.03288 * 264.32894 * 15 14 12 43 43 H 1.08998 * 110.03249 * 142.88896 * 15 14 12 44 44 H 1.09000 * 109.47702 * 187.81170 * 18 16 15 45 45 H 1.09006 * 109.47041 * 307.80999 * 18 16 15 46 46 H 0.97004 * 120.00267 * 0.02562 * 19 18 16 47 47 H 0.96998 * 120.00255 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.49069 * 217.71506 * 28 16 15 49 49 H 1.08999 * 110.60474 * 95.12333 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5231 -0.0013 6 6 5.0261 2.9705 0.9056 7 6 5.3359 4.2443 0.5685 8 6 4.5728 4.5255 -0.5895 9 6 4.5579 5.7941 -1.3458 10 8 5.2501 6.7257 -0.9839 11 7 3.7769 5.9188 -2.4371 12 6 3.7617 7.1773 -3.1869 13 1 4.7331 7.6694 -3.1375 14 6 2.6445 8.1142 -2.6644 15 6 2.3447 9.0469 -3.8561 16 6 2.7892 8.2967 -5.1240 17 1 3.5676 8.8606 -5.6380 18 6 1.5940 8.0854 -6.0554 19 7 1.1522 9.3783 -6.5840 20 6 0.0899 9.4388 -7.4459 21 1 -0.4226 8.5335 -7.7358 22 6 -0.3284 10.6639 -7.9471 23 7 0.2964 11.7673 -7.5943 24 14 -1.7780 10.7465 -9.1224 25 1 -2.9872 10.1998 -8.4560 26 1 -2.0223 12.1594 -9.5085 27 1 -1.4772 9.9460 -10.3364 28 6 3.3431 6.9342 -4.6585 29 7 3.8741 3.4415 -0.8620 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8567 0.6440 -0.8909 36 1 3.8574 0.6437 0.8891 37 1 5.4210 2.4154 1.7437 38 1 6.0213 4.9067 1.0764 39 1 3.2249 5.1754 -2.7261 40 1 1.7579 7.5389 -2.3978 41 1 2.9984 8.6899 -1.8091 42 1 2.9073 9.9748 -3.7548 43 1 1.2769 9.2603 -3.9037 44 1 1.8867 7.4363 -6.8807 45 1 0.7783 7.6219 -5.5004 46 1 1.6127 10.1916 -6.3240 47 1 0.0040 12.6233 -7.9443 48 1 4.2073 6.6486 -5.2583 49 1 2.5709 6.1670 -4.7143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486206877.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:50 Heat of formation + Delta-G solvation = -23.340702 kcal Electronic energy + Delta-G solvation = -28118.982955 eV Core-core repulsion = 24081.924275 eV Total energy + Delta-G solvation = -4037.058679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.67894 -40.84421 -39.21977 -38.96518 -36.45266 -35.07359 -34.73658 -32.94613 -31.72800 -30.63175 -30.10526 -28.99625 -27.34597 -26.30029 -25.20260 -23.95869 -23.34040 -22.42597 -21.68451 -21.16184 -20.42253 -19.10632 -18.90683 -17.99933 -17.54655 -17.24661 -17.01606 -16.78927 -16.64470 -16.51691 -15.93898 -15.54042 -15.41111 -15.16840 -15.00380 -14.73853 -14.44572 -14.31477 -14.16435 -14.04783 -13.38140 -13.30021 -13.02509 -12.92088 -12.76383 -12.64581 -12.52562 -12.34104 -12.21695 -12.10027 -11.93574 -11.83771 -11.72061 -11.52507 -11.28829 -11.26211 -10.89920 -10.78352 -10.35763 -10.13610 -9.97222 -8.97634 -7.93606 -5.22234 0.48369 1.16656 1.32549 1.46974 1.50462 1.56608 2.11694 2.34906 2.57156 2.77922 3.36670 3.39359 3.56842 3.65179 3.77298 3.82868 3.85917 3.99097 4.13859 4.20682 4.22259 4.36403 4.44490 4.46082 4.48272 4.50643 4.59540 4.62254 4.66485 4.67132 4.74800 4.78359 4.78962 4.84250 4.90800 4.99765 5.12752 5.16964 5.24659 5.32003 5.40322 5.47716 5.52128 5.57545 5.80562 6.00657 6.28606 6.43242 6.86985 7.15583 7.34662 8.12331 8.35418 9.29859 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.002009 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.856514 B =13931.547212 C =15810.422822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.277 5.277 6 C 0.009 3.991 7 C -0.202 4.202 8 C -0.040 4.040 9 C 0.601 3.399 10 O -0.571 6.571 11 N -0.698 5.698 12 C 0.145 3.855 13 H 0.088 0.912 14 C -0.122 4.122 15 C -0.110 4.110 16 C -0.088 4.088 17 H 0.068 0.932 18 C 0.160 3.840 19 N -0.745 5.745 20 C -0.246 4.246 21 H 0.075 0.925 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.975 3.025 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.277 1.277 28 C -0.107 4.107 29 N -0.274 5.274 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.230 0.770 38 H 0.165 0.835 39 H 0.414 0.586 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.084 0.916 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -28.070 21.701 36.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.003 3.997 5 N -0.066 5.066 6 C -0.133 4.133 7 C -0.230 4.230 8 C -0.199 4.199 9 C 0.387 3.613 10 O -0.449 6.449 11 N -0.348 5.348 12 C 0.041 3.959 13 H 0.106 0.894 14 C -0.161 4.161 15 C -0.149 4.149 16 C -0.108 4.108 17 H 0.086 0.914 18 C 0.034 3.966 19 N -0.388 5.388 20 C -0.378 4.378 21 H 0.093 0.907 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.804 3.196 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.203 1.203 28 C -0.145 4.145 29 N -0.111 5.111 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.165 0.835 37 H 0.246 0.754 38 H 0.182 0.818 39 H 0.251 0.749 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.527 -28.227 21.083 36.027 hybrid contribution -0.615 1.257 -0.328 1.438 sum 6.911 -26.970 20.755 34.727 Atomic orbital electron populations 1.22959 0.78817 1.04267 1.00860 1.87745 1.21793 1.26827 1.95676 1.22595 0.92841 0.85457 1.01749 1.21971 0.92301 0.77147 1.08295 1.45636 1.30746 1.11698 1.18556 1.23512 0.96022 0.95597 0.98217 1.22027 1.05204 0.97569 0.98165 1.21864 1.03424 0.93870 1.00786 1.17214 0.78960 0.85211 0.79910 1.90771 1.44191 1.40812 1.69112 1.45771 1.44864 1.16649 1.27503 1.21926 0.99357 0.83901 0.90741 0.89367 1.22641 0.98486 0.97456 0.97509 1.22023 1.01026 0.98160 0.93657 1.21755 0.96914 0.96547 0.95538 0.91398 1.20895 0.94005 0.87451 0.94247 1.42591 1.36889 1.04629 1.54680 1.19616 1.06643 0.93085 1.18420 0.90693 1.25597 1.02870 0.95245 1.03326 1.69813 1.44612 0.97675 1.49980 0.85192 0.79346 0.76136 0.78968 1.20377 1.22190 1.20325 1.22505 1.01611 0.96758 0.93656 1.73427 1.22789 0.97925 1.16937 0.93098 0.93611 0.87753 0.92381 0.92682 0.87237 0.83485 0.75392 0.81759 0.74896 0.91011 0.91936 0.92295 0.92801 0.96160 0.96089 0.79420 0.94035 0.89707 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -4.46 10.70 -148.98 -1.59 -6.05 16 3 C 0.05 0.49 6.04 71.98 0.43 0.93 16 4 C 0.12 0.77 6.77 86.38 0.58 1.36 16 5 N -0.28 -3.41 3.41 -347.96 -1.19 -4.60 16 6 C 0.01 0.09 11.40 83.53 0.95 1.04 16 7 C -0.20 -3.55 10.81 22.41 0.24 -3.31 16 8 C -0.04 -0.91 7.13 42.45 0.30 -0.61 16 9 C 0.60 16.36 7.82 86.74 0.68 17.04 16 10 O -0.57 -19.36 16.57 -3.93 -0.07 -19.42 16 11 N -0.70 -16.48 5.18 -439.39 -2.27 -18.76 16 12 C 0.15 3.74 3.27 46.29 0.15 3.89 16 13 H 0.09 2.51 7.55 -2.38 -0.02 2.49 16 14 C -0.12 -3.40 6.51 31.67 0.21 -3.20 16 15 C -0.11 -3.61 6.19 31.32 0.19 -3.42 16 16 C -0.09 -2.86 2.96 -10.07 -0.03 -2.89 16 17 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 18 C 0.16 6.45 5.27 86.38 0.46 6.91 16 19 N -0.75 -38.76 5.39 -343.45 -1.85 -40.62 16 20 C -0.25 -14.01 9.99 84.03 0.84 -13.18 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 23 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 24 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 28 C -0.11 -2.65 5.98 31.68 0.19 -2.46 16 29 N -0.27 -5.19 11.35 -48.18 -0.55 -5.73 16 30 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 35 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.15 -0.03 8.04 -2.39 -0.02 -0.05 16 37 H 0.23 0.01 8.06 -2.91 -0.02 -0.01 16 38 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.41 8.29 8.29 -92.71 -0.77 7.52 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 2.02 7.62 -2.39 -0.02 2.01 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.37 20.73 7.55 -92.71 -0.70 20.03 16 47 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.09 1.94 7.73 -2.39 -0.02 1.92 16 Total: -1.00 -76.65 408.01 1.19 -75.46 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.51 Total: 31.72 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.92 Total: -0.55 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -5.58 Total: -130.01 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.66 Total: -25.48 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -76.65 1.19 -75.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206877.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.117 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds