Wall clock time and date at job start Tue Mar 31 2020 19:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99970 * 2 1 4 4 C 1.52990 * 109.47232 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.35040 * 124.88652 * 125.02628 * 5 4 3 7 7 C 1.35364 * 107.23026 * 179.72320 * 6 5 4 8 8 C 1.41504 * 105.50246 * 0.41513 * 7 6 5 9 9 C 1.47707 * 126.51766 * 179.84379 * 8 7 6 10 10 O 1.21569 * 120.00079 * 359.71372 * 9 8 7 11 11 N 1.34781 * 119.99731 * 179.70959 * 9 8 7 12 12 C 1.46497 * 119.99817 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.01391 * 325.05957 * 12 11 9 14 14 C 1.53871 * 110.03494 * 86.45192 * 12 11 9 15 15 C 1.54269 * 106.59815 * 119.33499 * 14 12 11 16 16 C 1.54881 * 104.19471 * 336.38864 * 15 14 12 17 17 H 1.09003 * 110.76177 * 279.44322 * 16 15 14 18 18 C 1.53005 * 110.75931 * 156.25841 * 16 15 14 19 19 N 1.46505 * 109.46904 * 66.45247 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.54269 * 110.07286 * 203.64699 * 12 11 9 29 29 N 1.28465 * 124.88604 * 305.01952 * 5 4 3 30 30 H 1.09003 * 109.47600 * 59.99803 * 1 2 3 31 31 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47257 * 299.99583 * 1 2 3 33 33 H 1.08997 * 109.46536 * 59.99809 * 3 2 1 34 34 H 1.09000 * 109.46740 * 300.00321 * 3 2 1 35 35 H 1.08998 * 109.47429 * 59.99827 * 4 3 2 36 36 H 1.09003 * 109.46921 * 300.00059 * 4 3 2 37 37 H 1.08003 * 126.38443 * 359.97438 * 6 5 4 38 38 H 1.07996 * 127.24973 * 180.25169 * 7 6 5 39 39 H 0.97002 * 119.99990 * 359.97438 * 11 9 8 40 40 H 1.08993 * 110.03526 * 0.04698 * 14 12 11 41 41 H 1.09002 * 110.03396 * 238.61621 * 14 12 11 42 42 H 1.09004 * 110.48517 * 217.70846 * 15 14 12 43 43 H 1.08997 * 110.59695 * 95.12673 * 15 14 12 44 44 H 1.09003 * 109.46946 * 306.46007 * 18 16 15 45 45 H 1.08993 * 109.47679 * 186.45549 * 18 16 15 46 46 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.48849 * 145.62367 * 28 12 11 49 49 H 1.08997 * 110.48674 * 22.97221 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0264 2.9695 0.9070 7 6 5.3403 4.2419 0.5679 8 6 4.5722 4.5262 -0.5860 9 6 4.5571 5.7956 -1.3410 10 8 5.2500 6.7266 -0.9789 11 7 3.7750 5.9218 -2.4315 12 6 3.7604 7.1807 -3.1806 13 1 3.8759 8.0225 -2.4978 14 6 4.8931 7.1875 -4.2221 15 6 4.2206 7.3251 -5.6037 16 6 2.7841 6.7903 -5.3818 17 1 2.7691 5.7007 -5.4077 18 6 1.8233 7.3686 -6.4227 19 7 2.1775 6.8596 -7.7501 20 6 1.4521 7.2432 -8.8463 21 1 0.6192 7.9212 -8.7326 22 6 1.7913 6.7654 -10.1048 23 7 2.8066 5.9395 -10.2435 24 14 0.8066 7.2947 -11.6013 25 1 -0.2758 8.2200 -11.1797 26 1 1.7018 7.9853 -12.5640 27 1 0.2105 6.0992 -12.2498 28 6 2.4391 7.3144 -3.9656 29 7 3.8772 3.4408 -0.8624 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8573 0.6437 0.8891 37 1 5.4217 2.4136 1.7443 38 1 6.0296 4.9020 1.0733 39 1 3.2225 5.1789 -2.7206 40 1 5.4532 6.2539 -4.1708 41 1 5.5583 8.0326 -4.0449 42 1 4.7430 6.7194 -6.3443 43 1 4.1951 8.3692 -5.9154 44 1 1.8958 8.4562 -6.4195 45 1 0.8030 7.0717 -6.1801 46 1 2.9258 6.2509 -7.8523 47 1 3.0434 5.6054 -11.1229 48 1 2.1260 8.3575 -4.0106 49 1 1.6615 6.7009 -3.5107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486206879.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:55 Heat of formation + Delta-G solvation = 2.141250 kcal Electronic energy + Delta-G solvation = -28353.782053 eV Core-core repulsion = 24317.828354 eV Total energy + Delta-G solvation = -4035.953699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.99203 -39.80386 -38.52681 -37.83975 -34.74789 -34.38753 -33.24402 -31.25050 -30.87866 -29.93178 -28.72880 -27.80397 -26.80898 -24.86249 -24.17757 -22.65494 -22.17111 -21.75496 -20.27878 -19.94408 -19.58385 -18.24174 -17.34620 -17.02492 -16.80967 -16.51634 -16.24500 -15.98723 -15.27780 -15.01948 -14.81480 -14.35618 -14.31190 -14.12943 -13.91401 -13.68056 -13.39195 -13.27188 -12.91107 -12.76875 -12.57714 -12.19888 -12.13072 -11.89741 -11.74381 -11.22077 -11.13235 -11.02154 -10.83639 -10.70131 -10.48339 -10.30304 -10.24613 -10.17519 -10.11935 -9.88954 -9.62754 -9.60679 -9.40473 -8.99411 -8.83067 -6.86500 -5.72750 -3.00571 1.32568 1.82929 1.89023 3.09136 3.29197 3.33940 3.45410 3.50893 3.53249 3.95370 4.26152 4.39479 4.44984 4.59508 4.61096 4.73260 4.80882 4.84891 4.85309 4.95046 5.04367 5.13340 5.16133 5.19675 5.35648 5.46799 5.57986 5.59502 5.67889 5.75943 5.79909 5.94163 5.97542 6.07885 6.18992 6.19382 6.30923 6.34000 6.39251 6.47390 6.56575 6.67381 6.69185 6.86117 6.99863 7.38432 7.66804 7.74005 8.17987 8.46592 9.57675 10.17318 10.51976 11.50372 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.002267 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.180633 B =12350.881815 C =14361.556447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.282 5.282 6 C -0.016 4.016 7 C -0.178 4.178 8 C -0.012 4.012 9 C 0.603 3.397 10 O -0.535 6.535 11 N -0.707 5.707 12 C 0.141 3.859 13 H 0.089 0.911 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.098 4.098 17 H 0.074 0.926 18 C 0.161 3.839 19 N -0.732 5.732 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.123 4.123 29 N -0.260 5.260 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.406 0.594 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.082 0.918 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 -10.347 27.875 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.003 3.997 5 N -0.071 5.071 6 C -0.158 4.158 7 C -0.206 4.206 8 C -0.173 4.173 9 C 0.387 3.613 10 O -0.410 6.410 11 N -0.358 5.358 12 C 0.037 3.963 13 H 0.107 0.893 14 C -0.172 4.172 15 C -0.149 4.149 16 C -0.117 4.117 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.161 4.161 29 N -0.096 5.096 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.201 0.799 38 H 0.181 0.819 39 H 0.241 0.759 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.037 0.963 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.818 -10.300 27.270 29.162 hybrid contribution -0.133 0.058 -0.471 0.493 sum 0.685 -10.242 26.799 28.697 Atomic orbital electron populations 1.22811 0.79604 1.03298 1.00594 1.87773 1.20849 1.26557 1.95639 1.22641 0.92040 0.85751 1.02402 1.21701 0.93183 0.78430 1.06341 1.45317 1.31255 1.11514 1.19044 1.22899 0.97817 0.96689 0.98379 1.21802 1.04370 0.96008 0.98387 1.22045 1.01557 0.94060 0.99602 1.16885 0.79786 0.84828 0.79776 1.90789 1.42220 1.39302 1.68703 1.46070 1.45055 1.17014 1.27659 1.21707 0.95899 0.85784 0.92899 0.89283 1.22608 0.97430 1.02210 0.94910 1.22335 0.95202 1.01858 0.95545 1.22320 0.95580 1.00175 0.93592 0.90759 1.20646 0.94816 0.95862 0.85372 1.42360 1.37776 1.56263 1.01194 1.19288 1.09158 1.22209 0.86096 0.91215 1.24737 0.98692 1.00217 0.97543 1.69672 1.29662 1.36481 1.22475 0.86128 0.79153 0.77647 0.83355 1.20598 1.21908 1.21945 1.22667 0.95482 1.02483 0.95495 1.73503 1.22805 0.97657 1.15598 0.93364 0.89029 0.93784 0.92499 0.91094 0.87695 0.86901 0.79938 0.81869 0.75863 0.91617 0.91398 0.91179 0.91281 0.96271 0.96569 0.78263 0.93636 0.89909 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.82 10.70 -35.23 -0.38 -3.19 16 3 C 0.05 0.32 6.04 37.15 0.22 0.54 16 4 C 0.12 0.68 6.77 -4.05 -0.03 0.66 16 5 N -0.28 -2.30 3.41 -61.33 -0.21 -2.51 16 6 C -0.02 -0.11 11.40 -17.17 -0.20 -0.31 16 7 C -0.18 -1.75 10.81 -39.36 -0.43 -2.18 16 8 C -0.01 -0.14 7.13 -82.76 -0.59 -0.74 16 9 C 0.60 8.38 7.81 -12.39 -0.10 8.28 16 10 O -0.54 -8.87 16.60 5.31 0.09 -8.78 16 11 N -0.71 -8.89 4.94 -53.71 -0.27 -9.15 16 12 C 0.14 1.83 3.22 -66.81 -0.22 1.62 16 13 H 0.09 1.19 7.61 -51.93 -0.39 0.80 16 14 C -0.13 -1.86 6.59 -25.61 -0.17 -2.03 16 15 C -0.11 -1.78 5.97 -25.08 -0.15 -1.93 16 16 C -0.10 -1.57 2.96 -88.63 -0.26 -1.83 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C 0.16 3.24 5.69 -4.04 -0.02 3.21 16 19 N -0.73 -18.73 5.45 -59.90 -0.33 -19.06 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 24 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 C -0.12 -1.57 5.88 -25.07 -0.15 -1.72 16 29 N -0.26 -2.84 11.36 33.42 0.38 -2.46 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.32 8.04 -51.93 -0.42 -0.10 16 37 H 0.18 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.41 4.71 8.28 -40.82 -0.34 4.37 16 40 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.14 8.01 -51.93 -0.42 0.72 16 44 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.32 7.53 -40.82 -0.31 10.01 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 49 H 0.07 0.82 7.98 -51.93 -0.41 0.41 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -34.94 408.30 -8.22 -43.16 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.15 Total: 8.63 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.21 Total: -2.56 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.30 Total: -61.07 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.29 Total: -11.97 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.94 -8.22 -43.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206879.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.303 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds