Wall clock time and date at job start Tue Mar 31 2020 19:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99970 * 2 1 4 4 C 1.52990 * 109.47232 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.35040 * 124.88652 * 125.02628 * 5 4 3 7 7 C 1.35364 * 107.23026 * 179.72320 * 6 5 4 8 8 C 1.41504 * 105.50246 * 0.41513 * 7 6 5 9 9 C 1.47707 * 126.51766 * 179.84379 * 8 7 6 10 10 O 1.21569 * 120.00079 * 359.71372 * 9 8 7 11 11 N 1.34781 * 119.99731 * 179.70959 * 9 8 7 12 12 C 1.46497 * 119.99817 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.01391 * 325.05957 * 12 11 9 14 14 C 1.53871 * 110.03494 * 86.45192 * 12 11 9 15 15 C 1.54269 * 106.59815 * 119.33499 * 14 12 11 16 16 C 1.54881 * 104.19471 * 336.38864 * 15 14 12 17 17 H 1.09003 * 110.76177 * 279.44322 * 16 15 14 18 18 C 1.53005 * 110.75931 * 156.25841 * 16 15 14 19 19 N 1.46505 * 109.46904 * 66.45247 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.54269 * 110.07286 * 203.64699 * 12 11 9 29 29 N 1.28465 * 124.88604 * 305.01952 * 5 4 3 30 30 H 1.09003 * 109.47600 * 59.99803 * 1 2 3 31 31 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47257 * 299.99583 * 1 2 3 33 33 H 1.08997 * 109.46536 * 59.99809 * 3 2 1 34 34 H 1.09000 * 109.46740 * 300.00321 * 3 2 1 35 35 H 1.08998 * 109.47429 * 59.99827 * 4 3 2 36 36 H 1.09003 * 109.46921 * 300.00059 * 4 3 2 37 37 H 1.08003 * 126.38443 * 359.97438 * 6 5 4 38 38 H 1.07996 * 127.24973 * 180.25169 * 7 6 5 39 39 H 0.97002 * 119.99990 * 359.97438 * 11 9 8 40 40 H 1.08993 * 110.03526 * 0.04698 * 14 12 11 41 41 H 1.09002 * 110.03396 * 238.61621 * 14 12 11 42 42 H 1.09004 * 110.48517 * 217.70846 * 15 14 12 43 43 H 1.08997 * 110.59695 * 95.12673 * 15 14 12 44 44 H 1.09003 * 109.46946 * 306.46007 * 18 16 15 45 45 H 1.08993 * 109.47679 * 186.45549 * 18 16 15 46 46 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.48849 * 145.62367 * 28 12 11 49 49 H 1.08997 * 110.48674 * 22.97221 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0264 2.9695 0.9070 7 6 5.3403 4.2419 0.5679 8 6 4.5722 4.5262 -0.5860 9 6 4.5571 5.7956 -1.3410 10 8 5.2500 6.7266 -0.9789 11 7 3.7750 5.9218 -2.4315 12 6 3.7604 7.1807 -3.1806 13 1 3.8759 8.0225 -2.4978 14 6 4.8931 7.1875 -4.2221 15 6 4.2206 7.3251 -5.6037 16 6 2.7841 6.7903 -5.3818 17 1 2.7691 5.7007 -5.4077 18 6 1.8233 7.3686 -6.4227 19 7 2.1775 6.8596 -7.7501 20 6 1.4521 7.2432 -8.8463 21 1 0.6192 7.9212 -8.7326 22 6 1.7913 6.7654 -10.1048 23 7 2.8066 5.9395 -10.2435 24 14 0.8066 7.2947 -11.6013 25 1 -0.2758 8.2200 -11.1797 26 1 1.7018 7.9853 -12.5640 27 1 0.2105 6.0992 -12.2498 28 6 2.4391 7.3144 -3.9656 29 7 3.8772 3.4408 -0.8624 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8573 0.6437 0.8891 37 1 5.4217 2.4136 1.7443 38 1 6.0296 4.9020 1.0733 39 1 3.2225 5.1789 -2.7206 40 1 5.4532 6.2539 -4.1708 41 1 5.5583 8.0326 -4.0449 42 1 4.7430 6.7194 -6.3443 43 1 4.1951 8.3692 -5.9154 44 1 1.8958 8.4562 -6.4195 45 1 0.8030 7.0717 -6.1801 46 1 2.9258 6.2509 -7.8523 47 1 3.0434 5.6054 -11.1229 48 1 2.1260 8.3575 -4.0106 49 1 1.6615 6.7009 -3.5107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486206879.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:54 Heat of formation + Delta-G solvation = -22.437640 kcal Electronic energy + Delta-G solvation = -28354.847873 eV Core-core repulsion = 24317.828354 eV Total energy + Delta-G solvation = -4037.019520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.67908 -40.90620 -39.15124 -38.95167 -36.46034 -35.04447 -34.63079 -32.95209 -31.71988 -30.62954 -30.14722 -29.01948 -27.34665 -26.31179 -25.24938 -23.96371 -23.36262 -22.42487 -21.24107 -20.99925 -20.96706 -19.10887 -18.92755 -18.02687 -17.49664 -17.25855 -17.02162 -16.72883 -16.68604 -16.15354 -15.89872 -15.80043 -15.31183 -15.18988 -15.00077 -14.72360 -14.58410 -14.42766 -14.22600 -13.98384 -13.54840 -13.10965 -13.04777 -12.88785 -12.82689 -12.63252 -12.34879 -12.29048 -12.12482 -12.06876 -11.94062 -11.85775 -11.62598 -11.51897 -11.45643 -11.22199 -10.92040 -10.78583 -10.36464 -10.14290 -9.98354 -8.97294 -7.94260 -5.22403 0.49263 1.17515 1.32024 1.47158 1.48090 1.58238 2.15838 2.36577 2.56579 2.78196 3.37842 3.39288 3.56909 3.58152 3.77317 3.82033 3.89024 3.98701 4.13801 4.18365 4.21752 4.43119 4.44010 4.47852 4.52818 4.53139 4.60284 4.61533 4.65983 4.73030 4.74697 4.76930 4.78987 4.83835 4.87642 5.05937 5.07020 5.17022 5.23533 5.32949 5.36968 5.49123 5.55815 5.58337 5.80811 6.00688 6.28488 6.43455 6.87132 7.16056 7.34548 8.12350 8.35151 9.29736 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.002267 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.180633 B =12350.881815 C =14361.556447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.277 5.277 6 C 0.008 3.992 7 C -0.201 4.201 8 C -0.041 4.041 9 C 0.601 3.399 10 O -0.569 6.569 11 N -0.701 5.701 12 C 0.147 3.853 13 H 0.091 0.909 14 C -0.124 4.124 15 C -0.108 4.108 16 C -0.090 4.090 17 H 0.068 0.932 18 C 0.159 3.841 19 N -0.745 5.745 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.973 3.027 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.293 1.293 28 C -0.109 4.109 29 N -0.277 5.277 30 H 0.044 0.956 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.230 0.770 38 H 0.167 0.833 39 H 0.411 0.589 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.023 0.977 45 H 0.021 0.979 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.095 0.905 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 -11.090 29.813 31.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.067 5.067 6 C -0.134 4.134 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.387 3.613 10 O -0.447 6.447 11 N -0.352 5.352 12 C 0.043 3.957 13 H 0.109 0.891 14 C -0.163 4.163 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.086 0.914 18 C 0.033 3.967 19 N -0.387 5.387 20 C -0.374 4.374 21 H 0.094 0.906 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.803 3.197 25 H -0.190 1.190 26 H -0.221 1.221 27 H -0.220 1.220 28 C -0.147 4.147 29 N -0.114 5.114 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.166 0.834 37 H 0.246 0.754 38 H 0.184 0.816 39 H 0.247 0.753 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.113 0.887 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.041 -11.036 29.231 31.245 hybrid contribution 0.093 0.221 -1.000 1.028 sum 0.052 -10.815 28.231 30.232 Atomic orbital electron populations 1.22961 0.78781 1.04267 1.00889 1.87747 1.21856 1.26865 1.95678 1.22584 0.92734 0.85455 1.01766 1.21962 0.92452 0.77230 1.08162 1.45626 1.30922 1.11725 1.18422 1.23532 0.95879 0.95716 0.98267 1.22029 1.05007 0.97568 0.98266 1.21929 1.03419 0.93876 1.00818 1.17185 0.79130 0.85241 0.79749 1.90755 1.43628 1.40647 1.69675 1.46024 1.44846 1.16974 1.27325 1.21597 0.95407 0.86152 0.92561 0.89127 1.22512 0.97712 1.02082 0.93951 1.22244 0.95277 1.00916 0.96109 1.22189 0.94626 0.99649 0.94424 0.91379 1.20819 0.95929 0.95943 0.84035 1.42588 1.37239 1.56191 1.02731 1.19696 1.09076 1.21501 0.87123 0.90643 1.25579 1.00089 1.00880 1.00524 1.69831 1.31501 1.38075 1.22791 0.85068 0.77935 0.77242 0.79500 1.18980 1.22109 1.22028 1.22581 0.95788 1.03366 0.92941 1.73449 1.23228 0.97969 1.16769 0.93751 0.87807 0.92831 0.92040 0.92883 0.87652 0.83352 0.75353 0.81577 0.75258 0.92331 0.90850 0.93488 0.91833 0.95942 0.96108 0.79487 0.94082 0.88695 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.21 10.70 -148.98 -1.59 -6.80 16 3 C 0.05 0.59 6.04 71.98 0.43 1.03 16 4 C 0.12 1.03 6.77 86.38 0.58 1.61 16 5 N -0.28 -3.94 3.41 -347.96 -1.19 -5.12 16 6 C 0.01 0.09 11.40 83.54 0.95 1.05 16 7 C -0.20 -3.71 10.81 22.41 0.24 -3.47 16 8 C -0.04 -0.98 7.13 42.46 0.30 -0.68 16 9 C 0.60 16.78 7.81 86.75 0.68 17.46 16 10 O -0.57 -19.12 16.60 -3.93 -0.07 -19.18 16 11 N -0.70 -17.42 4.94 -442.09 -2.18 -19.60 16 12 C 0.15 3.71 3.22 45.72 0.15 3.86 16 13 H 0.09 2.34 7.61 -2.38 -0.02 2.32 16 14 C -0.12 -3.46 6.59 31.32 0.21 -3.26 16 15 C -0.11 -3.48 5.97 31.67 0.19 -3.29 16 16 C -0.09 -2.86 2.96 -9.50 -0.03 -2.89 16 17 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 18 C 0.16 6.34 5.69 86.38 0.49 6.83 16 19 N -0.75 -38.53 5.45 -343.44 -1.87 -40.40 16 20 C -0.24 -13.75 9.99 84.04 0.84 -12.92 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 24 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C -0.11 -2.62 5.88 31.67 0.19 -2.43 16 29 N -0.28 -5.83 11.36 -48.17 -0.55 -6.38 16 30 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.78 8.08 -2.39 -0.02 0.76 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.15 0.23 8.04 -2.39 -0.02 0.21 16 37 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 38 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.41 9.39 8.28 -92.71 -0.77 8.62 16 40 H 0.06 1.72 7.92 -2.39 -0.02 1.70 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.06 2.11 8.01 -2.39 -0.02 2.09 16 44 H 0.02 0.90 8.10 -2.39 -0.02 0.88 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.37 20.61 7.53 -92.71 -0.70 19.92 16 47 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 48 H 0.09 2.12 8.05 -2.39 -0.02 2.10 16 49 H 0.09 1.86 7.98 -2.39 -0.02 1.84 16 Total: -1.00 -76.37 408.30 1.29 -75.08 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.51 Total: 33.56 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.94 Total: 0.27 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.51 Total: -131.77 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.66 Total: -25.98 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -76.37 1.29 -75.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486206879.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.641 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds