Wall clock time and date at job start Tue Mar 31 2020 19:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99605 * 2 1 4 4 C 1.52997 * 109.46783 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46947 * 65.00294 * 4 3 2 6 6 C 1.36941 * 120.00187 * 274.38946 * 5 4 3 7 7 H 1.07997 * 119.99774 * 145.90796 * 6 5 4 8 8 C 1.38813 * 119.99878 * 325.92003 * 6 5 4 9 9 N 1.31620 * 119.99744 * 335.47614 * 8 6 5 10 10 Si 1.86793 * 120.00440 * 155.47930 * 8 6 5 11 11 H 1.48503 * 109.46869 * 59.99345 * 10 8 6 12 12 H 1.48491 * 109.47457 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46870 * 300.00115 * 10 8 6 14 14 C 1.46505 * 120.00163 * 94.39704 * 5 4 3 15 15 C 1.52995 * 109.46764 * 269.99764 * 14 5 4 16 16 N 1.46501 * 109.47212 * 180.02562 * 15 14 5 17 17 C 1.34776 * 120.00395 * 180.27788 * 16 15 14 18 18 O 1.21604 * 119.99679 * 359.71526 * 17 16 15 19 19 C 1.47422 * 120.00265 * 179.72049 * 17 16 15 20 20 C 1.41290 * 126.41527 * 359.68922 * 19 17 16 21 21 N 1.30446 * 108.02584 * 179.87706 * 20 19 17 22 22 N 1.39936 * 108.89595 * 0.38141 * 21 20 19 23 23 C 1.46501 * 125.75605 * 179.77099 * 22 21 20 24 24 C 1.53780 * 113.61345 * 194.11234 * 23 22 21 25 25 C 1.53956 * 87.01720 * 220.04981 * 24 23 22 26 26 C 1.53778 * 113.61079 * 96.50494 * 23 22 21 27 27 C 1.34256 * 108.49128 * 359.75145 * 22 21 20 28 28 H 1.08993 * 109.47492 * 300.00395 * 1 2 3 29 29 H 1.09007 * 109.47126 * 60.00453 * 1 2 3 30 30 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46869 * 59.99790 * 3 2 1 32 32 H 1.09000 * 109.47063 * 299.99490 * 3 2 1 33 33 H 1.08997 * 109.47640 * 304.99902 * 4 3 2 34 34 H 1.08999 * 109.47087 * 184.99973 * 4 3 2 35 35 H 0.97003 * 119.99835 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47160 * 150.00049 * 14 5 4 37 37 H 1.08997 * 109.47175 * 29.99603 * 14 5 4 38 38 H 1.09000 * 109.47560 * 59.99647 * 15 14 5 39 39 H 1.09006 * 109.47001 * 299.99769 * 15 14 5 40 40 H 0.97000 * 119.99763 * 359.97438 * 16 15 14 41 41 H 1.08003 * 125.98613 * 359.97438 * 20 19 17 42 42 H 1.08996 * 112.84969 * 325.31033 * 23 22 21 43 43 H 1.09001 * 113.61741 * 334.56786 * 24 23 22 44 44 H 1.09002 * 113.61190 * 105.47676 * 24 23 22 45 45 H 1.08997 * 113.53833 * 270.80826 * 25 24 23 46 46 H 1.09000 * 113.74254 * 139.95142 * 25 24 23 47 47 H 1.09006 * 113.61815 * 254.52868 * 26 23 22 48 48 H 1.08999 * 113.61741 * 25.43665 * 26 23 22 49 49 H 1.07998 * 126.29581 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9765 0.5641 -1.2509 6 6 4.0116 -0.8002 -1.3635 7 1 3.7892 -1.2697 -2.3103 8 6 4.3329 -1.5796 -0.2606 9 7 5.0507 -1.0707 0.7182 10 14 3.7466 -3.3506 -0.1657 11 1 4.2919 -4.1148 -1.3163 12 1 4.2196 -3.9613 1.1024 13 1 2.2625 -3.3836 -0.2084 14 6 4.3804 1.4031 -2.3820 15 6 3.1613 1.7000 -3.2575 16 7 3.5652 2.5384 -4.3890 17 6 2.6497 2.9328 -5.2961 18 8 1.4894 2.5884 -5.1782 19 6 3.0550 3.7815 -6.4313 20 6 4.3566 4.2632 -6.6957 21 7 4.3098 4.9742 -7.7884 22 7 2.9936 4.9885 -8.2636 23 6 2.5252 5.6818 -9.4662 24 6 0.9947 5.8058 -9.5489 25 6 1.1318 5.5022 -11.0520 26 6 2.4428 4.7764 -10.7064 27 6 2.2327 4.2593 -7.4319 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6884 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5687 0.8427 34 1 3.9783 2.1766 0.0902 35 1 5.2755 -1.6154 1.4887 36 1 5.1327 0.8798 -2.9722 37 1 4.7969 2.3390 -2.0098 38 1 2.4089 2.2232 -2.6674 39 1 2.7447 0.7640 -3.6298 40 1 4.4906 2.8133 -4.4829 41 1 5.2366 4.0745 -6.0986 42 1 3.0496 6.6205 -9.6449 43 1 0.4633 5.0325 -8.9941 44 1 0.6258 6.8094 -9.3372 45 1 1.2740 6.3924 -11.6647 46 1 0.3559 4.8417 -11.4390 47 1 3.2413 4.9501 -11.4278 48 1 2.3081 3.7212 -10.4686 49 1 1.1721 4.0793 -7.5281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486428901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:51 Heat of formation + Delta-G solvation = 44.912320 kcal Electronic energy + Delta-G solvation = -28859.603552 eV Core-core repulsion = 24825.504545 eV Total energy + Delta-G solvation = -4034.099006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.70249 -39.27702 -38.51286 -37.17357 -35.65514 -34.05711 -32.12009 -31.30388 -30.50828 -29.28440 -27.44788 -26.36926 -25.79275 -25.55397 -23.98373 -22.78732 -21.66480 -21.40913 -20.40271 -19.92887 -19.56944 -18.24159 -16.71761 -16.28787 -16.16676 -15.77804 -15.41883 -15.32743 -14.88805 -14.84073 -14.59112 -14.49667 -13.94954 -13.82015 -13.47383 -13.40874 -13.28918 -13.05309 -12.83292 -12.68724 -12.47628 -11.92843 -11.84438 -11.73512 -11.33646 -11.24866 -11.11376 -11.00970 -10.79585 -10.68337 -10.60238 -10.48069 -9.98028 -9.91615 -9.75018 -9.65698 -9.62681 -8.89801 -8.71326 -8.47022 -8.32926 -6.56458 -5.66651 -3.19544 1.42392 2.07431 2.10794 3.49768 3.54274 3.55739 3.64295 3.65812 3.73630 3.87557 4.14503 4.18842 4.47883 4.55797 4.65211 4.80853 4.92935 5.01224 5.03364 5.12754 5.21488 5.27967 5.32408 5.40916 5.43748 5.57416 5.65299 5.69612 5.85164 5.88535 5.93075 5.99258 6.16773 6.23376 6.26853 6.36046 6.39057 6.63204 6.64645 6.70916 6.77701 6.79790 7.03595 7.37747 7.72479 7.90372 7.94241 8.18498 8.58015 8.62950 9.27037 9.93164 10.44034 11.34920 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.002169 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.172503 B =12904.958080 C =13274.731369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.571 5.571 6 C -0.244 4.244 7 H 0.058 0.942 8 C 0.022 3.978 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.138 3.862 15 C 0.098 3.902 16 N -0.719 5.719 17 C 0.588 3.412 18 O -0.556 6.556 19 C -0.286 4.286 20 C 0.080 3.920 21 N -0.300 5.300 22 N -0.353 5.353 23 C 0.132 3.868 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.148 4.148 27 C 0.122 3.878 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.029 0.971 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.395 0.605 41 H 0.191 0.809 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 15.715 -18.652 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.373 4.373 7 H 0.075 0.925 8 C -0.177 4.177 9 N -0.534 5.534 10 Si 0.728 3.272 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.206 1.206 14 C 0.010 3.990 15 C -0.027 4.027 16 N -0.369 5.369 17 C 0.375 3.625 18 O -0.436 6.436 19 C -0.301 4.301 20 C -0.107 4.107 21 N -0.118 5.118 22 N -0.131 5.131 23 C 0.031 3.969 24 C -0.187 4.187 25 C -0.175 4.175 26 C -0.186 4.186 27 C -0.028 4.028 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.228 0.772 41 H 0.207 0.793 42 H 0.143 0.857 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.109 0.891 49 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.686 15.968 -19.316 25.698 hybrid contribution -0.738 -0.970 0.671 1.391 sum -6.424 14.998 -18.645 24.776 Atomic orbital electron populations 1.22632 0.84411 1.01396 0.98385 1.88242 1.16394 1.27404 1.94787 1.23462 0.98679 0.84323 0.96854 1.21154 0.87894 0.96531 0.93383 1.43577 1.74104 1.02378 1.08977 1.18783 1.40717 0.80749 0.97066 0.92453 1.24880 0.96871 0.97653 0.98334 1.69965 1.36207 1.36785 1.10438 0.86463 0.79503 0.84820 0.76453 1.21262 1.22060 1.20632 1.21009 0.92834 0.94750 0.90443 1.22444 1.00506 0.93664 0.86118 1.45869 1.11437 1.52970 1.26665 1.17236 0.85205 0.79060 0.81013 1.90758 1.18547 1.57818 1.76432 1.20391 0.94115 1.13123 1.02483 1.24111 0.97588 0.94853 0.94174 1.77146 0.97073 1.23768 1.13857 1.48578 1.05904 1.38154 1.20514 1.23132 0.95623 0.96744 0.81422 1.23496 0.93414 1.04029 0.97754 1.22735 0.97917 1.01249 0.95563 1.23456 0.98708 0.99980 0.96486 1.22822 0.98394 0.91953 0.89665 0.95668 0.95191 0.90845 0.95942 0.95249 0.87529 0.94112 0.93736 0.92651 0.94313 0.92416 0.91624 0.77163 0.79272 0.85699 0.88612 0.89593 0.89233 0.89939 0.90019 0.89098 0.79882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.35 -8.12 9.97 -35.23 -0.35 -8.47 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.14 3.17 5.83 -4.04 -0.02 3.14 16 5 N -0.57 -13.79 2.45 -173.24 -0.42 -14.22 16 6 C -0.24 -6.64 8.75 -15.06 -0.13 -6.77 16 7 H 0.06 1.59 7.94 -52.49 -0.42 1.18 16 8 C 0.02 0.62 4.95 -17.43 -0.09 0.53 16 9 N -0.89 -25.63 11.37 55.49 0.63 -25.00 16 10 Si 0.90 22.58 29.62 -169.99 -5.03 17.54 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 13 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.14 2.70 5.82 -4.04 -0.02 2.68 16 15 C 0.10 1.82 6.00 -4.04 -0.02 1.80 16 16 N -0.72 -10.86 5.55 -61.38 -0.34 -11.20 16 17 C 0.59 9.49 7.81 -12.52 -0.10 9.40 16 18 O -0.56 -11.07 16.90 5.27 0.09 -10.98 16 19 C -0.29 -3.73 6.13 -105.07 -0.64 -4.38 16 20 C 0.08 0.91 11.50 -16.98 -0.20 0.71 16 21 N -0.30 -3.57 12.50 30.86 0.39 -3.18 16 22 N -0.35 -3.59 3.77 -53.53 -0.20 -3.80 16 23 C 0.13 0.89 5.01 -67.12 -0.34 0.55 16 24 C -0.15 -0.71 7.45 -25.83 -0.19 -0.90 16 25 C -0.14 -0.52 8.09 -25.83 -0.21 -0.73 16 26 C -0.15 -0.83 7.88 -25.92 -0.20 -1.03 16 27 C 0.12 1.37 10.50 -16.56 -0.17 1.20 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.60 6.46 -51.93 -0.34 0.27 16 33 H 0.11 2.85 5.38 -51.93 -0.28 2.57 16 34 H 0.04 0.85 7.84 -51.93 -0.41 0.44 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.06 1.09 8.04 -51.93 -0.42 0.67 16 37 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 38 H 0.06 1.15 6.46 -51.93 -0.34 0.81 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.39 4.70 7.43 -40.82 -0.30 4.40 16 41 H 0.19 1.56 7.50 -52.48 -0.39 1.16 16 42 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.49 6.29 -51.93 -0.33 0.16 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.18 1.73 6.66 -52.49 -0.35 1.38 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -34.63 402.19 -7.94 -42.58 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.76 Total: 1.62 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.00 Total: 9.05 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.05 Total: -57.40 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.26 Total: -19.45 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.63 -7.94 -42.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486428901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.488 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds