Wall clock time and date at job start Tue Mar 31 2020 19:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99605 * 2 1 4 4 C 1.52997 * 109.46783 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46947 * 65.00294 * 4 3 2 6 6 C 1.36941 * 120.00187 * 274.38946 * 5 4 3 7 7 H 1.07997 * 119.99774 * 145.90796 * 6 5 4 8 8 C 1.38813 * 119.99878 * 325.92003 * 6 5 4 9 9 N 1.31620 * 119.99744 * 335.47614 * 8 6 5 10 10 Si 1.86793 * 120.00440 * 155.47930 * 8 6 5 11 11 H 1.48503 * 109.46869 * 59.99345 * 10 8 6 12 12 H 1.48491 * 109.47457 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46870 * 300.00115 * 10 8 6 14 14 C 1.46505 * 120.00163 * 94.39704 * 5 4 3 15 15 C 1.52995 * 109.46764 * 269.99764 * 14 5 4 16 16 N 1.46501 * 109.47212 * 180.02562 * 15 14 5 17 17 C 1.34776 * 120.00395 * 180.27788 * 16 15 14 18 18 O 1.21604 * 119.99679 * 359.71526 * 17 16 15 19 19 C 1.47422 * 120.00265 * 179.72049 * 17 16 15 20 20 C 1.41290 * 126.41527 * 359.68922 * 19 17 16 21 21 N 1.30446 * 108.02584 * 179.87706 * 20 19 17 22 22 N 1.39936 * 108.89595 * 0.38141 * 21 20 19 23 23 C 1.46501 * 125.75605 * 179.77099 * 22 21 20 24 24 C 1.53780 * 113.61345 * 194.11234 * 23 22 21 25 25 C 1.53956 * 87.01720 * 220.04981 * 24 23 22 26 26 C 1.53778 * 113.61079 * 96.50494 * 23 22 21 27 27 C 1.34256 * 108.49128 * 359.75145 * 22 21 20 28 28 H 1.08993 * 109.47492 * 300.00395 * 1 2 3 29 29 H 1.09007 * 109.47126 * 60.00453 * 1 2 3 30 30 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46869 * 59.99790 * 3 2 1 32 32 H 1.09000 * 109.47063 * 299.99490 * 3 2 1 33 33 H 1.08997 * 109.47640 * 304.99902 * 4 3 2 34 34 H 1.08999 * 109.47087 * 184.99973 * 4 3 2 35 35 H 0.97003 * 119.99835 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47160 * 150.00049 * 14 5 4 37 37 H 1.08997 * 109.47175 * 29.99603 * 14 5 4 38 38 H 1.09000 * 109.47560 * 59.99647 * 15 14 5 39 39 H 1.09006 * 109.47001 * 299.99769 * 15 14 5 40 40 H 0.97000 * 119.99763 * 359.97438 * 16 15 14 41 41 H 1.08003 * 125.98613 * 359.97438 * 20 19 17 42 42 H 1.08996 * 112.84969 * 325.31033 * 23 22 21 43 43 H 1.09001 * 113.61741 * 334.56786 * 24 23 22 44 44 H 1.09002 * 113.61190 * 105.47676 * 24 23 22 45 45 H 1.08997 * 113.53833 * 270.80826 * 25 24 23 46 46 H 1.09000 * 113.74254 * 139.95142 * 25 24 23 47 47 H 1.09006 * 113.61815 * 254.52868 * 26 23 22 48 48 H 1.08999 * 113.61741 * 25.43665 * 26 23 22 49 49 H 1.07998 * 126.29581 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9765 0.5641 -1.2509 6 6 4.0116 -0.8002 -1.3635 7 1 3.7892 -1.2697 -2.3103 8 6 4.3329 -1.5796 -0.2606 9 7 5.0507 -1.0707 0.7182 10 14 3.7466 -3.3506 -0.1657 11 1 4.2919 -4.1148 -1.3163 12 1 4.2196 -3.9613 1.1024 13 1 2.2625 -3.3836 -0.2084 14 6 4.3804 1.4031 -2.3820 15 6 3.1613 1.7000 -3.2575 16 7 3.5652 2.5384 -4.3890 17 6 2.6497 2.9328 -5.2961 18 8 1.4894 2.5884 -5.1782 19 6 3.0550 3.7815 -6.4313 20 6 4.3566 4.2632 -6.6957 21 7 4.3098 4.9742 -7.7884 22 7 2.9936 4.9885 -8.2636 23 6 2.5252 5.6818 -9.4662 24 6 0.9947 5.8058 -9.5489 25 6 1.1318 5.5022 -11.0520 26 6 2.4428 4.7764 -10.7064 27 6 2.2327 4.2593 -7.4319 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6884 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5687 0.8427 34 1 3.9783 2.1766 0.0902 35 1 5.2755 -1.6154 1.4887 36 1 5.1327 0.8798 -2.9722 37 1 4.7969 2.3390 -2.0098 38 1 2.4089 2.2232 -2.6674 39 1 2.7447 0.7640 -3.6298 40 1 4.4906 2.8133 -4.4829 41 1 5.2366 4.0745 -6.0986 42 1 3.0496 6.6205 -9.6449 43 1 0.4633 5.0325 -8.9941 44 1 0.6258 6.8094 -9.3372 45 1 1.2740 6.3924 -11.6647 46 1 0.3559 4.8417 -11.4390 47 1 3.2413 4.9501 -11.4278 48 1 2.3081 3.7212 -10.4686 49 1 1.1721 4.0793 -7.5281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486428901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:50 Heat of formation + Delta-G solvation = 21.545755 kcal Electronic energy + Delta-G solvation = -28860.616802 eV Core-core repulsion = 24825.504545 eV Total energy + Delta-G solvation = -4035.112256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.53764 -40.34309 -39.28505 -38.85744 -37.34720 -35.61228 -33.39642 -32.78000 -31.58863 -30.81581 -29.06829 -27.14912 -26.83051 -26.55649 -25.61766 -24.01165 -22.99190 -22.30324 -22.06979 -21.09729 -20.19577 -19.22010 -18.61341 -17.44221 -17.13328 -16.85831 -16.80570 -16.57538 -16.42418 -16.30949 -15.85304 -15.58727 -15.49456 -15.27696 -14.93287 -14.76202 -14.23663 -14.02208 -13.92573 -13.56303 -13.42166 -13.39673 -13.20904 -12.98772 -12.66558 -12.44908 -12.38526 -12.36709 -12.26207 -12.12489 -11.90267 -11.67964 -11.65182 -11.51387 -11.48702 -10.95086 -10.56126 -10.42368 -10.32633 -10.07146 -9.61372 -8.55503 -7.73670 -5.28762 0.49780 1.15610 1.33788 1.47983 1.52990 1.61051 2.31082 2.48439 2.64253 3.16905 3.23284 3.39208 3.44852 3.67731 3.73867 3.77757 3.78596 3.83722 4.09271 4.27540 4.34341 4.35364 4.43872 4.51065 4.52989 4.59971 4.62278 4.71152 4.73244 4.75788 4.78416 4.82789 4.91953 4.92850 4.93359 4.99028 5.03174 5.16370 5.29227 5.29963 5.42380 5.57174 5.75475 5.86202 5.86686 6.48019 6.50048 6.68729 6.71250 7.25862 7.35435 7.95532 8.41993 9.23245 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.002169 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.172503 B =12904.958080 C =13274.731369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.053 3.947 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.241 4.241 7 H 0.044 0.956 8 C -0.019 4.019 9 N -0.913 5.913 10 Si 0.942 3.058 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.288 1.288 14 C 0.142 3.858 15 C 0.122 3.878 16 N -0.708 5.708 17 C 0.589 3.411 18 O -0.600 6.600 19 C -0.311 4.311 20 C 0.086 3.914 21 N -0.320 5.320 22 N -0.345 5.345 23 C 0.116 3.884 24 C -0.145 4.145 25 C -0.124 4.124 26 C -0.149 4.149 27 C 0.129 3.871 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.248 0.752 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.032 0.968 40 H 0.413 0.587 41 H 0.216 0.784 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 17.470 -20.167 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.371 4.371 7 H 0.062 0.938 8 C -0.216 4.216 9 N -0.558 5.558 10 Si 0.771 3.229 11 H -0.206 1.206 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.015 3.985 15 C -0.005 4.005 16 N -0.359 5.359 17 C 0.378 3.622 18 O -0.483 6.483 19 C -0.326 4.326 20 C -0.101 4.101 21 N -0.139 5.139 22 N -0.123 5.123 23 C 0.016 3.984 24 C -0.184 4.184 25 C -0.162 4.162 26 C -0.187 4.187 27 C -0.024 4.024 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.249 0.751 41 H 0.232 0.768 42 H 0.153 0.847 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.125 0.875 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.095 0.905 49 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.070 17.764 -20.877 28.076 hybrid contribution -0.657 -1.423 1.022 1.872 sum -6.727 16.341 -19.855 26.580 Atomic orbital electron populations 1.22788 0.82077 1.02348 0.99839 1.88164 1.19124 1.28683 1.95120 1.23328 0.97163 0.83978 0.98106 1.21117 0.89545 0.96709 0.91823 1.43730 1.74626 1.01946 1.10348 1.18826 1.39374 0.82515 0.96425 0.93806 1.25350 0.97612 1.00160 0.98512 1.70060 1.37505 1.37490 1.10758 0.85756 0.78446 0.82231 0.76418 1.20605 1.22093 1.21438 1.21050 0.93035 0.95123 0.89287 1.21894 0.99451 0.92543 0.86621 1.45628 1.12420 1.52250 1.25622 1.17622 0.84499 0.78649 0.81393 1.90730 1.20377 1.59626 1.77539 1.20183 0.95526 1.14474 1.02460 1.24488 0.97714 0.93872 0.94019 1.77121 0.98164 1.24359 1.14244 1.48905 1.05241 1.37337 1.20792 1.23637 0.97065 0.97186 0.80504 1.23524 0.91726 1.04659 0.98460 1.22730 0.96733 1.01643 0.95056 1.23445 1.00104 0.99115 0.96043 1.23064 0.99000 0.91129 0.89156 0.93249 0.94541 0.90271 0.93551 0.94832 0.90881 0.91929 0.94241 0.92757 0.91676 0.93545 0.94936 0.75057 0.76766 0.84666 0.89048 0.88357 0.87539 0.89375 0.89538 0.90524 0.78541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.17 16 2 O -0.39 -18.04 9.97 -148.98 -1.48 -19.52 16 3 C 0.05 2.18 6.28 71.98 0.45 2.63 16 4 C 0.13 6.16 5.83 86.38 0.50 6.66 16 5 N -0.59 -28.27 2.45 -702.02 -1.72 -29.99 16 6 C -0.24 -13.26 8.75 84.03 0.74 -12.53 16 7 H 0.04 2.49 7.94 -2.91 -0.02 2.47 16 8 C -0.02 -1.08 4.95 84.86 0.42 -0.66 16 9 N -0.91 -53.21 11.37 21.65 0.25 -52.96 16 10 Si 0.94 46.90 29.62 68.60 2.03 48.94 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 13 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 14 C 0.14 5.45 5.82 86.38 0.50 5.96 16 15 C 0.12 4.49 6.00 86.38 0.52 5.01 16 16 N -0.71 -20.78 5.55 -466.38 -2.59 -23.37 16 17 C 0.59 18.80 7.81 86.66 0.68 19.48 16 18 O -0.60 -24.12 16.90 -4.04 -0.07 -24.19 16 19 C -0.31 -7.82 6.13 -20.15 -0.12 -7.94 16 20 C 0.09 1.81 11.50 85.65 0.99 2.80 16 21 N -0.32 -7.12 12.50 -56.27 -0.70 -7.82 16 22 N -0.35 -6.52 3.77 -323.26 -1.22 -7.74 16 23 C 0.12 1.34 5.01 45.52 0.23 1.57 16 24 C -0.15 -1.08 7.45 31.18 0.23 -0.85 16 25 C -0.12 -0.63 8.09 31.18 0.25 -0.38 16 26 C -0.15 -1.42 7.88 31.12 0.25 -1.18 16 27 C 0.13 2.76 10.50 84.28 0.88 3.65 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.03 1.34 6.46 -2.39 -0.02 1.33 16 33 H 0.07 3.94 5.38 -2.39 -0.01 3.93 16 34 H 0.06 2.52 7.84 -2.39 -0.02 2.50 16 35 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 37 H 0.07 2.18 7.86 -2.39 -0.02 2.16 16 38 H 0.05 1.83 6.46 -2.39 -0.02 1.82 16 39 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.41 9.10 7.43 -92.71 -0.69 8.41 16 41 H 0.22 3.03 7.50 -2.91 -0.02 3.00 16 42 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 0.78 6.29 -2.39 -0.02 0.76 16 44 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.20 3.53 6.66 -2.91 -0.02 3.51 16 Total: -1.00 -75.58 402.19 2.52 -73.06 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.27 Total: 17.22 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 7.76 Total: 26.39 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -5.99 Total: -121.88 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.55 Total: -43.71 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.94 kcal Total: -75.58 2.52 -73.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486428901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.603 kcal (2) G-P(sol) polarization free energy of solvation -75.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds