Wall clock time and date at job start Tue Mar 31 2020 19:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99418 * 2 1 4 4 C 1.53005 * 109.46657 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47467 * 65.70863 * 4 3 2 6 6 C 1.36941 * 119.99768 * 267.90708 * 5 4 3 7 7 H 1.08005 * 119.99971 * 142.26039 * 6 5 4 8 8 C 1.38814 * 119.99935 * 322.25612 * 6 5 4 9 9 N 1.31618 * 119.99672 * 156.38733 * 8 6 5 10 10 Si 1.86796 * 120.00145 * 336.38266 * 8 6 5 11 11 H 1.48501 * 109.46954 * 95.50937 * 10 8 6 12 12 H 1.48501 * 109.47385 * 215.51150 * 10 8 6 13 13 H 1.48499 * 109.47470 * 335.51440 * 10 8 6 14 14 C 1.46497 * 120.00355 * 87.90320 * 5 4 3 15 15 C 1.52998 * 109.47317 * 270.00274 * 14 5 4 16 16 N 1.46498 * 109.47233 * 179.97438 * 15 14 5 17 17 C 1.34776 * 120.00136 * 179.97438 * 16 15 14 18 18 O 1.21573 * 119.99911 * 0.02562 * 17 16 15 19 19 C 1.47715 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.32203 * 126.67639 * 0.41779 * 19 17 16 21 21 N 1.28841 * 110.14808 * 180.02562 * 20 19 17 22 22 H 0.96999 * 124.98134 * 179.64098 * 21 20 19 23 23 C 1.34312 * 110.04358 * 359.68549 * 21 20 19 24 24 C 1.35588 * 107.21547 * 0.11200 * 23 21 20 25 25 C 1.50378 * 124.61854 * 179.86792 * 24 23 21 26 26 C 1.53469 * 108.28405 * 343.70201 * 25 24 23 27 27 C 1.53112 * 109.51401 * 49.49784 * 26 25 24 28 28 C 1.50708 * 128.90663 * 180.16140 * 23 21 20 29 29 H 1.09008 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47144 * 299.99538 * 1 2 3 31 31 H 1.08993 * 109.47525 * 59.99930 * 1 2 3 32 32 H 1.08993 * 109.47060 * 60.00869 * 3 2 1 33 33 H 1.08997 * 109.47191 * 299.99942 * 3 2 1 34 34 H 1.09007 * 109.47009 * 305.70650 * 4 3 2 35 35 H 1.09001 * 109.46952 * 185.70940 * 4 3 2 36 36 H 0.97007 * 119.99724 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47282 * 149.99349 * 14 5 4 38 38 H 1.09001 * 109.46694 * 30.00466 * 14 5 4 39 39 H 1.09004 * 109.47019 * 59.99491 * 15 14 5 40 40 H 1.09000 * 109.46901 * 299.99949 * 15 14 5 41 41 H 0.97004 * 120.00174 * 0.02562 * 16 15 14 42 42 H 1.09003 * 109.70265 * 103.40648 * 25 24 23 43 43 H 1.08997 * 109.69973 * 224.01026 * 25 24 23 44 44 H 1.08994 * 109.47160 * 289.48393 * 26 25 24 45 45 H 1.09005 * 109.45829 * 169.50373 * 26 25 24 46 46 H 1.08996 * 109.44128 * 169.89497 * 27 26 25 47 47 H 1.09001 * 109.40659 * 49.99178 * 27 26 25 48 48 H 1.09001 * 109.69492 * 282.96981 * 28 23 21 49 49 H 1.08998 * 109.69248 * 43.55456 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9769 0.5800 -1.2598 6 6 4.1393 -0.7768 -1.3477 7 1 3.8647 -1.2960 -2.2541 8 6 4.6571 -1.4850 -0.2719 9 7 4.3986 -2.7692 -0.1438 10 14 5.7208 -0.6156 0.9937 11 1 4.8796 -0.1970 2.1437 12 1 6.7822 -1.5399 1.4673 13 1 6.3462 0.5815 0.3764 14 6 4.2445 1.4268 -2.4249 15 6 2.9634 1.5840 -3.2463 16 7 3.2309 2.4313 -4.4111 17 6 2.2420 2.7091 -5.2837 18 8 1.1279 2.2570 -5.1039 19 6 2.5117 3.5639 -6.4578 20 7 3.6677 4.1164 -6.7835 21 7 3.5433 4.7986 -7.8694 22 1 4.2568 5.2964 -8.2982 23 6 2.2805 4.7201 -8.3202 24 6 1.5915 3.9411 -7.4501 25 6 0.1335 3.5973 -7.5813 26 6 -0.5037 4.5739 -8.5790 27 6 0.3484 4.6356 -9.8496 28 6 1.6731 5.3480 -9.5482 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8506 0.5580 0.8336 35 1 3.9783 2.1755 0.1016 36 1 4.7607 -3.2642 0.6078 37 1 5.0164 0.9647 -3.0403 38 1 4.5847 2.4071 -2.0911 39 1 2.1915 2.0462 -2.6308 40 1 2.6232 0.6037 -3.5800 41 1 4.1199 2.7917 -4.5547 42 1 0.0282 2.5762 -7.9482 43 1 -0.3550 3.6919 -6.6115 44 1 -0.5599 5.5659 -8.1309 45 1 -1.5076 4.2319 -8.8312 46 1 -0.1910 5.1837 -10.6219 47 1 0.5522 3.6232 -10.1985 48 1 1.4874 6.4066 -9.3659 49 1 2.3520 5.2338 -10.3932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486429100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:23 Heat of formation + Delta-G solvation = 10.839559 kcal Electronic energy + Delta-G solvation = -29437.148779 eV Core-core repulsion = 25401.572267 eV Total energy + Delta-G solvation = -4035.576512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.00233 -39.08781 -37.40573 -37.19007 -35.82905 -34.14316 -32.83144 -31.56928 -30.18756 -30.11658 -29.36414 -27.72514 -25.59970 -24.56675 -24.02943 -23.18219 -22.42487 -21.74715 -20.64023 -19.75345 -19.22364 -17.99768 -16.96396 -16.70021 -16.20846 -15.98493 -15.43801 -15.25168 -14.94847 -14.63965 -14.60787 -14.17002 -14.10032 -14.01004 -13.72516 -13.59050 -13.35401 -13.18496 -13.01673 -12.52009 -12.37116 -12.34623 -11.81666 -11.65071 -11.26787 -11.13891 -11.10389 -10.98804 -10.91364 -10.82458 -10.64925 -10.59008 -10.18855 -9.87316 -9.71777 -9.51755 -9.47475 -8.86382 -8.80356 -8.55300 -8.38440 -6.81190 -5.85612 -3.27245 1.51002 1.94151 2.61024 3.38862 3.42591 3.53272 3.55912 3.57021 4.21478 4.31861 4.52018 4.55968 4.63154 4.66214 4.88425 4.99516 5.03097 5.12433 5.20212 5.26366 5.33222 5.51371 5.57897 5.65610 5.71352 5.74907 5.80370 5.82433 5.86484 5.92168 6.00805 6.07574 6.08460 6.09983 6.18541 6.22401 6.27015 6.35280 6.37846 6.62856 6.67152 6.77790 6.81291 6.92323 7.58583 7.89140 8.02549 8.18314 8.45048 8.52018 9.05834 9.83165 10.17950 11.30157 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.002529 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.617994 B =11068.840662 C =11909.103751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.043 3.957 4 C 0.132 3.868 5 N -0.590 5.590 6 C -0.258 4.258 7 H 0.076 0.924 8 C 0.045 3.955 9 N -0.893 5.893 10 Si 0.871 3.129 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.271 1.271 14 C 0.139 3.861 15 C 0.096 3.904 16 N -0.711 5.711 17 C 0.596 3.404 18 O -0.532 6.532 19 C 0.001 3.999 20 N -0.263 5.263 21 N -0.376 5.376 22 H 0.443 0.557 23 C 0.005 3.995 24 C -0.143 4.143 25 C -0.044 4.044 26 C -0.121 4.121 27 C -0.115 4.115 28 C -0.046 4.046 29 H 0.078 0.922 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 19.752 -17.623 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C -0.037 4.037 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.386 4.386 7 H 0.094 0.906 8 C -0.156 4.156 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.029 4.029 16 N -0.362 5.362 17 C 0.380 3.620 18 O -0.407 6.407 19 C -0.159 4.159 20 N -0.099 5.099 21 N -0.088 5.088 22 H 0.288 0.712 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.082 4.082 26 C -0.159 4.159 27 C -0.153 4.153 28 C -0.085 4.085 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.236 0.764 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.352 19.098 -16.964 26.099 hybrid contribution 0.430 1.043 0.287 1.164 sum -4.922 20.141 -16.677 26.608 Atomic orbital electron populations 1.22648 0.83693 1.01886 0.98381 1.88279 1.17012 1.26431 1.94816 1.23371 0.97317 0.85210 0.97780 1.21385 0.90418 0.96774 0.90809 1.43893 1.76441 1.04261 1.06590 1.18581 1.37156 0.80030 1.02844 0.90606 1.25337 0.97869 0.94801 0.97550 1.69910 1.44260 1.08460 1.30734 0.87016 0.81324 0.79607 0.81897 1.21465 1.23072 1.19570 1.21013 0.93545 0.94417 0.89822 1.22461 1.00983 0.94215 0.85261 1.45950 1.12923 1.51579 1.25747 1.16878 0.84838 0.79600 0.80711 1.90787 1.22471 1.52554 1.74852 1.21762 0.90641 1.04212 0.99317 1.73846 1.24297 1.09965 1.01813 1.42952 1.09872 1.37588 1.18419 0.71249 1.21150 0.85851 1.04722 1.00447 1.19903 0.97769 1.02479 0.95137 1.19994 0.88808 0.99068 1.00301 1.21673 0.98891 1.00035 0.95268 1.21568 0.94438 1.01165 0.98130 1.20217 0.96890 0.99356 0.92044 0.90328 0.95640 0.95016 0.95458 0.94142 0.91551 0.92821 0.92954 0.91818 0.94053 0.92027 0.90908 0.76357 0.90506 0.89679 0.91764 0.91136 0.90935 0.91237 0.89980 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.68 16 2 O -0.35 -8.03 10.31 -35.23 -0.36 -8.39 16 3 C 0.04 0.86 6.28 37.16 0.23 1.09 16 4 C 0.13 2.88 4.90 -4.04 -0.02 2.86 16 5 N -0.59 -13.86 2.04 -173.24 -0.35 -14.21 16 6 C -0.26 -7.23 9.53 -15.06 -0.14 -7.37 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 8 C 0.05 1.32 5.26 -17.43 -0.09 1.22 16 9 N -0.89 -27.80 13.97 55.49 0.78 -27.02 16 10 Si 0.87 22.29 25.15 -169.99 -4.28 18.01 16 11 H -0.29 -7.21 6.66 56.52 0.38 -6.83 16 12 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.14 2.67 5.83 -4.04 -0.02 2.65 16 15 C 0.10 1.78 5.95 -4.04 -0.02 1.76 16 16 N -0.71 -11.37 5.55 -61.29 -0.34 -11.71 16 17 C 0.60 10.12 7.83 -12.39 -0.10 10.02 16 18 O -0.53 -10.53 15.80 5.30 0.08 -10.44 16 19 C 0.00 0.01 7.12 -82.99 -0.59 -0.58 16 20 N -0.26 -3.25 11.96 33.28 0.40 -2.86 16 21 N -0.38 -3.32 6.82 33.42 0.23 -3.10 16 22 H 0.44 2.14 8.96 -190.22 -1.71 0.44 16 23 C 0.01 0.05 7.12 -82.45 -0.59 -0.54 16 24 C -0.14 -1.76 5.99 -104.88 -0.63 -2.39 16 25 C -0.04 -0.48 5.54 -27.80 -0.15 -0.64 16 26 C -0.12 -0.91 5.91 -26.43 -0.16 -1.06 16 27 C -0.11 -0.67 5.89 -26.47 -0.16 -0.83 16 28 C -0.05 -0.26 6.31 -27.67 -0.17 -0.43 16 29 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.78 5.94 -51.93 -0.31 0.47 16 34 H 0.07 1.62 3.50 -51.93 -0.18 1.44 16 35 H 0.05 1.00 7.92 -51.93 -0.41 0.59 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.06 1.22 8.04 -51.93 -0.42 0.81 16 38 H 0.04 0.69 7.91 -51.93 -0.41 0.28 16 39 H 0.06 1.19 6.00 -51.93 -0.31 0.88 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.40 5.57 8.21 -40.82 -0.34 5.23 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 1.08 7.67 -51.93 -0.40 0.68 16 44 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -35.79 391.11 -8.59 -44.38 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -9.13 Total: 2.00 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -1.50 Total: 7.44 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.71 Total: -58.89 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.28 Total: -18.83 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.28 Total: 18.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.79 -8.59 -44.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486429100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.218 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds