Wall clock time and date at job start Tue Mar 31 2020 19:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99418 * 2 1 4 4 C 1.53005 * 109.46657 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47467 * 65.70863 * 4 3 2 6 6 C 1.36941 * 119.99768 * 267.90708 * 5 4 3 7 7 H 1.08005 * 119.99971 * 142.26039 * 6 5 4 8 8 C 1.38814 * 119.99935 * 322.25612 * 6 5 4 9 9 N 1.31618 * 119.99672 * 156.38733 * 8 6 5 10 10 Si 1.86796 * 120.00145 * 336.38266 * 8 6 5 11 11 H 1.48501 * 109.46954 * 95.50937 * 10 8 6 12 12 H 1.48501 * 109.47385 * 215.51150 * 10 8 6 13 13 H 1.48499 * 109.47470 * 335.51440 * 10 8 6 14 14 C 1.46497 * 120.00355 * 87.90320 * 5 4 3 15 15 C 1.52998 * 109.47317 * 270.00274 * 14 5 4 16 16 N 1.46498 * 109.47233 * 179.97438 * 15 14 5 17 17 C 1.34776 * 120.00136 * 179.97438 * 16 15 14 18 18 O 1.21573 * 119.99911 * 0.02562 * 17 16 15 19 19 C 1.47715 * 119.99961 * 179.97438 * 17 16 15 20 20 N 1.32203 * 126.67639 * 0.41779 * 19 17 16 21 21 N 1.28841 * 110.14808 * 180.02562 * 20 19 17 22 22 H 0.96999 * 124.98134 * 179.64098 * 21 20 19 23 23 C 1.34312 * 110.04358 * 359.68549 * 21 20 19 24 24 C 1.35588 * 107.21547 * 0.11200 * 23 21 20 25 25 C 1.50378 * 124.61854 * 179.86792 * 24 23 21 26 26 C 1.53469 * 108.28405 * 343.70201 * 25 24 23 27 27 C 1.53112 * 109.51401 * 49.49784 * 26 25 24 28 28 C 1.50708 * 128.90663 * 180.16140 * 23 21 20 29 29 H 1.09008 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47144 * 299.99538 * 1 2 3 31 31 H 1.08993 * 109.47525 * 59.99930 * 1 2 3 32 32 H 1.08993 * 109.47060 * 60.00869 * 3 2 1 33 33 H 1.08997 * 109.47191 * 299.99942 * 3 2 1 34 34 H 1.09007 * 109.47009 * 305.70650 * 4 3 2 35 35 H 1.09001 * 109.46952 * 185.70940 * 4 3 2 36 36 H 0.97007 * 119.99724 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47282 * 149.99349 * 14 5 4 38 38 H 1.09001 * 109.46694 * 30.00466 * 14 5 4 39 39 H 1.09004 * 109.47019 * 59.99491 * 15 14 5 40 40 H 1.09000 * 109.46901 * 299.99949 * 15 14 5 41 41 H 0.97004 * 120.00174 * 0.02562 * 16 15 14 42 42 H 1.09003 * 109.70265 * 103.40648 * 25 24 23 43 43 H 1.08997 * 109.69973 * 224.01026 * 25 24 23 44 44 H 1.08994 * 109.47160 * 289.48393 * 26 25 24 45 45 H 1.09005 * 109.45829 * 169.50373 * 26 25 24 46 46 H 1.08996 * 109.44128 * 169.89497 * 27 26 25 47 47 H 1.09001 * 109.40659 * 49.99178 * 27 26 25 48 48 H 1.09001 * 109.69492 * 282.96981 * 28 23 21 49 49 H 1.08998 * 109.69248 * 43.55456 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9769 0.5800 -1.2598 6 6 4.1393 -0.7768 -1.3477 7 1 3.8647 -1.2960 -2.2541 8 6 4.6571 -1.4850 -0.2719 9 7 4.3986 -2.7692 -0.1438 10 14 5.7208 -0.6156 0.9937 11 1 4.8796 -0.1970 2.1437 12 1 6.7822 -1.5399 1.4673 13 1 6.3462 0.5815 0.3764 14 6 4.2445 1.4268 -2.4249 15 6 2.9634 1.5840 -3.2463 16 7 3.2309 2.4313 -4.4111 17 6 2.2420 2.7091 -5.2837 18 8 1.1279 2.2570 -5.1039 19 6 2.5117 3.5639 -6.4578 20 7 3.6677 4.1164 -6.7835 21 7 3.5433 4.7986 -7.8694 22 1 4.2568 5.2964 -8.2982 23 6 2.2805 4.7201 -8.3202 24 6 1.5915 3.9411 -7.4501 25 6 0.1335 3.5973 -7.5813 26 6 -0.5037 4.5739 -8.5790 27 6 0.3484 4.6356 -9.8496 28 6 1.6731 5.3480 -9.5482 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8506 0.5580 0.8336 35 1 3.9783 2.1755 0.1016 36 1 4.7607 -3.2642 0.6078 37 1 5.0164 0.9647 -3.0403 38 1 4.5847 2.4071 -2.0911 39 1 2.1915 2.0462 -2.6308 40 1 2.6232 0.6037 -3.5800 41 1 4.1199 2.7917 -4.5547 42 1 0.0282 2.5762 -7.9482 43 1 -0.3550 3.6919 -6.6115 44 1 -0.5599 5.5659 -8.1309 45 1 -1.5076 4.2319 -8.8312 46 1 -0.1910 5.1837 -10.6219 47 1 0.5522 3.6232 -10.1985 48 1 1.4874 6.4066 -9.3659 49 1 2.3520 5.2338 -10.3932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486429100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:22 Heat of formation + Delta-G solvation = -16.655381 kcal Electronic energy + Delta-G solvation = -29438.341049 eV Core-core repulsion = 25401.572267 eV Total energy + Delta-G solvation = -4036.768782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.86674 -40.48075 -39.08064 -37.83942 -37.51728 -35.71837 -33.82165 -33.56451 -31.37563 -30.93004 -30.50037 -29.38438 -27.17331 -26.12605 -24.80087 -24.62420 -23.40900 -22.96769 -22.36155 -21.08330 -19.98969 -18.81933 -18.76341 -18.01468 -17.72277 -17.11663 -17.01266 -16.83629 -16.35725 -16.14891 -15.78200 -15.51637 -15.32731 -15.02869 -14.96394 -14.67132 -14.56803 -14.39891 -14.12064 -14.08308 -13.89720 -13.59745 -13.24147 -12.98697 -12.91056 -12.58066 -12.43270 -12.30838 -11.89876 -11.88205 -11.74818 -11.69411 -11.68734 -11.61248 -11.42993 -11.15019 -10.55916 -10.47203 -10.37101 -10.00877 -9.63474 -8.78232 -8.08912 -5.47892 0.46650 1.07330 1.36856 1.45813 1.57288 1.82845 2.19535 2.31544 2.51453 3.09666 3.11563 3.32952 3.54045 3.64236 3.87211 4.05091 4.12826 4.16451 4.21843 4.29852 4.34730 4.38480 4.41565 4.50372 4.56619 4.59253 4.62817 4.64643 4.66776 4.73606 4.77137 4.84724 4.97466 4.98940 5.05135 5.12159 5.14132 5.17545 5.25474 5.32542 5.41563 5.48326 5.50293 6.01011 6.10678 6.25832 6.46465 6.54984 6.85096 7.04124 7.16032 7.69825 8.08009 9.11440 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.002529 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.617994 B =11068.840662 C =11909.103751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.042 3.958 4 C 0.123 3.877 5 N -0.601 5.601 6 C -0.241 4.241 7 H 0.027 0.973 8 C -0.015 4.015 9 N -0.948 5.948 10 Si 0.943 3.057 11 H -0.279 1.279 12 H -0.312 1.312 13 H -0.247 1.247 14 C 0.142 3.858 15 C 0.116 3.884 16 N -0.701 5.701 17 C 0.593 3.407 18 O -0.571 6.571 19 C -0.032 4.032 20 N -0.270 5.270 21 N -0.354 5.354 22 H 0.463 0.537 23 C 0.029 3.971 24 C -0.173 4.173 25 C -0.045 4.045 26 C -0.116 4.116 27 C -0.114 4.114 28 C -0.044 4.044 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.096 0.904 36 H 0.259 0.741 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.415 0.585 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.060 0.940 48 H 0.106 0.894 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 24.203 -19.025 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.323 5.323 6 C -0.371 4.371 7 H 0.045 0.955 8 C -0.211 4.211 9 N -0.592 5.592 10 Si 0.772 3.228 11 H -0.206 1.206 12 H -0.241 1.241 13 H -0.171 1.171 14 C 0.016 3.984 15 C -0.010 4.010 16 N -0.353 5.353 17 C 0.378 3.622 18 O -0.448 6.448 19 C -0.190 4.190 20 N -0.108 5.108 21 N -0.069 5.069 22 H 0.312 0.688 23 C -0.099 4.099 24 C -0.184 4.184 25 C -0.083 4.083 26 C -0.153 4.153 27 C -0.152 4.152 28 C -0.083 4.083 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.252 0.748 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.079 0.921 48 H 0.124 0.876 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.528 23.627 -18.391 30.281 hybrid contribution 0.088 -0.296 0.570 0.648 sum -4.439 23.331 -17.821 29.692 Atomic orbital electron populations 1.22774 0.81509 1.02466 0.99968 1.88202 1.19687 1.28563 1.95208 1.23388 0.96201 0.84475 0.99548 1.21583 0.91822 0.98048 0.88762 1.43949 1.76945 1.02987 1.08468 1.18330 1.35558 0.82305 1.00891 0.95507 1.25985 0.99395 0.95411 1.00339 1.70065 1.46339 1.10591 1.32222 0.85857 0.78850 0.78732 0.79382 1.20599 1.24126 1.17097 1.21105 0.93364 0.95466 0.88458 1.21997 1.00589 0.92517 0.85879 1.45750 1.13550 1.51027 1.24956 1.17305 0.84231 0.79331 0.81293 1.90755 1.24011 1.54161 1.75913 1.21432 0.92348 1.05743 0.99456 1.73752 1.23420 1.10449 1.03174 1.43065 1.10602 1.36129 1.17145 0.68806 1.21665 0.85198 1.02592 1.00471 1.20173 0.98314 1.04042 0.95841 1.19958 0.88861 0.99462 1.00013 1.21656 0.99442 0.99013 0.95225 1.21598 0.94627 1.01348 0.97599 1.20462 0.96821 1.00063 0.90912 0.90441 0.92713 0.94552 0.92198 0.93588 0.93962 0.88588 0.93243 0.92149 0.89956 0.92519 0.95156 0.74837 0.92109 0.92499 0.91238 0.90285 0.88100 0.92092 0.87633 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.30 16 2 O -0.40 -18.51 10.31 -148.98 -1.54 -20.05 16 3 C 0.04 1.64 6.28 71.98 0.45 2.10 16 4 C 0.12 5.10 4.90 86.38 0.42 5.52 16 5 N -0.60 -28.05 2.04 -702.00 -1.43 -29.48 16 6 C -0.24 -14.01 9.53 84.03 0.80 -13.21 16 7 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 8 C -0.02 -0.91 5.26 84.86 0.45 -0.47 16 9 N -0.95 -61.69 13.97 21.65 0.30 -61.39 16 10 Si 0.94 46.57 25.15 68.60 1.73 48.29 16 11 H -0.28 -13.28 6.66 99.48 0.66 -12.61 16 12 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 13 H -0.25 -11.14 7.11 99.48 0.71 -10.43 16 14 C 0.14 5.33 5.83 86.38 0.50 5.83 16 15 C 0.12 4.43 5.95 86.38 0.51 4.94 16 16 N -0.70 -22.74 5.55 -466.09 -2.59 -25.33 16 17 C 0.59 20.94 7.83 86.75 0.68 21.61 16 18 O -0.57 -24.10 15.80 -3.95 -0.06 -24.16 16 19 C -0.03 -0.92 7.12 42.14 0.30 -0.62 16 20 N -0.27 -6.30 11.96 -48.62 -0.58 -6.89 16 21 N -0.35 -5.26 6.82 -48.18 -0.33 -5.59 16 22 H 0.46 2.73 8.96 -219.80 -1.97 0.76 16 23 C 0.03 0.46 7.12 41.57 0.30 0.75 16 24 C -0.17 -4.21 5.99 -20.03 -0.12 -4.33 16 25 C -0.04 -1.03 5.54 29.90 0.17 -0.86 16 26 C -0.12 -1.56 5.91 30.79 0.18 -1.38 16 27 C -0.11 -0.96 5.89 30.77 0.18 -0.78 16 28 C -0.04 -0.29 6.31 29.99 0.19 -0.10 16 29 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.72 5.94 -2.39 -0.01 1.70 16 34 H 0.04 1.98 3.50 -2.38 -0.01 1.97 16 35 H 0.10 3.16 7.92 -2.39 -0.02 3.14 16 36 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 37 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 38 H 0.08 2.47 7.91 -2.39 -0.02 2.46 16 39 H 0.06 2.22 6.00 -2.38 -0.01 2.21 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.42 11.22 8.21 -92.71 -0.76 10.46 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.58 7.67 -2.39 -0.02 1.56 16 44 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 45 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 48 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -84.29 391.11 -0.03 -84.32 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -1.79 Total: 18.95 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.26 Total: 21.33 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -4.63 Total: -128.67 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.60 Total: -44.21 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.73 Total: 48.29 kcal Total: -84.29 -0.03 -84.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486429100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.665 kcal (2) G-P(sol) polarization free energy of solvation -84.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds