Wall clock time and date at job start Tue Mar 31 2020 19:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99542 * 2 1 4 4 C 1.53001 * 109.46786 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47340 * 65.00653 * 4 3 2 6 6 C 1.36940 * 119.99764 * 274.46286 * 5 4 3 7 7 H 1.07994 * 119.99827 * 146.16446 * 6 5 4 8 8 C 1.38805 * 120.00003 * 326.16904 * 6 5 4 9 9 N 1.31618 * 120.00283 * 335.30910 * 8 6 5 10 10 Si 1.86802 * 120.00290 * 155.31351 * 8 6 5 11 11 H 1.48507 * 109.47184 * 89.99521 * 10 8 6 12 12 H 1.48499 * 109.47514 * 209.99705 * 10 8 6 13 13 H 1.48501 * 109.47009 * 329.99998 * 10 8 6 14 14 C 1.46499 * 120.00308 * 94.45782 * 5 4 3 15 15 C 1.52998 * 109.47140 * 270.00744 * 14 5 4 16 16 N 1.46508 * 109.46985 * 180.02562 * 15 14 5 17 17 C 1.34770 * 120.00006 * 179.97438 * 16 15 14 18 18 O 1.21612 * 120.00237 * 359.97438 * 17 16 15 19 19 C 1.47405 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31879 * 125.93582 * 359.97438 * 19 17 16 21 21 C 1.33379 * 109.15575 * 179.97438 * 20 19 17 22 22 C 1.34871 * 108.15646 * 359.97438 * 21 20 19 23 23 N 1.35676 * 107.37325 * 0.07232 * 22 21 20 24 24 C 1.46452 * 124.57277 * 179.84813 * 23 22 21 25 25 C 1.53281 * 108.75270 * 342.78578 * 24 23 22 26 26 C 1.53144 * 109.60444 * 50.52389 * 25 24 23 27 27 C 1.50758 * 128.32223 * 180.08534 * 22 21 20 28 28 H 1.09000 * 109.47274 * 299.99128 * 1 2 3 29 29 H 1.08996 * 109.47525 * 59.99872 * 1 2 3 30 30 H 1.09006 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46855 * 60.00533 * 3 2 1 32 32 H 1.08992 * 109.47345 * 300.00679 * 3 2 1 33 33 H 1.09005 * 109.47200 * 305.00255 * 4 3 2 34 34 H 1.08998 * 109.47032 * 185.00335 * 4 3 2 35 35 H 0.96999 * 120.00316 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.46769 * 150.00150 * 14 5 4 37 37 H 1.09000 * 109.46584 * 30.00582 * 14 5 4 38 38 H 1.08996 * 109.47774 * 60.00022 * 15 14 5 39 39 H 1.09000 * 109.47249 * 299.99430 * 15 14 5 40 40 H 0.96997 * 119.99667 * 359.97438 * 16 15 14 41 41 H 1.08000 * 125.91637 * 180.24856 * 21 20 19 42 42 H 1.09002 * 109.58584 * 223.00841 * 24 23 22 43 43 H 1.08993 * 109.70812 * 102.64080 * 24 23 22 44 44 H 1.08999 * 109.45226 * 290.48428 * 25 24 23 45 45 H 1.08999 * 109.44644 * 170.55995 * 25 24 23 46 46 H 1.09000 * 109.50852 * 170.59395 * 26 25 24 47 47 H 1.09003 * 109.51359 * 50.45328 * 26 25 24 48 48 H 1.09003 * 109.73450 * 283.89074 * 27 22 21 49 49 H 1.08999 * 109.73150 * 44.57484 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5647 -1.2528 6 6 4.0092 -0.7995 -1.3664 7 1 3.7902 -1.2680 -2.3145 8 6 4.3248 -1.5803 -0.2630 9 7 5.0420 -1.0744 0.7178 10 14 3.7316 -3.3492 -0.1700 11 1 4.7461 -4.2444 -0.7822 12 1 3.5292 -3.7294 1.2512 13 1 2.4479 -3.4801 -0.9051 14 6 4.3799 1.4041 -2.3834 15 6 3.1608 1.7029 -3.2582 16 7 3.5652 2.5418 -4.3892 17 6 2.6510 2.9328 -5.2990 18 8 1.4904 2.5888 -5.1815 19 6 3.0577 3.7773 -6.4367 20 7 4.2777 4.2166 -6.6772 21 6 4.2673 4.9492 -7.7917 22 6 3.0056 4.9721 -8.2678 23 7 2.2397 4.2391 -7.4211 24 6 0.8010 4.0181 -7.5822 25 6 0.2486 5.0614 -8.5598 26 6 1.1040 5.0791 -9.8299 27 6 2.4846 5.6637 -9.5019 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8901 32 1 1.6884 1.8465 -0.8898 33 1 3.8514 0.5683 0.8409 34 1 3.9784 2.1766 0.0890 35 1 5.2628 -1.6201 1.4887 36 1 5.1315 0.8805 -2.9741 37 1 4.7975 2.3393 -2.0105 38 1 2.4091 2.2265 -2.6676 39 1 2.7431 0.7677 -3.6312 40 1 4.4909 2.8158 -4.4832 41 1 5.1220 5.4357 -8.2381 42 1 0.3049 4.1226 -6.6172 43 1 0.6248 3.0176 -7.9772 44 1 0.2729 6.0457 -8.0922 45 1 -0.7796 4.8080 -8.8182 46 1 0.6185 5.6947 -10.5872 47 1 1.2192 4.0623 -10.2055 48 1 2.3959 6.7338 -9.3144 49 1 3.1650 5.4907 -10.3356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486433558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:56 Heat of formation + Delta-G solvation = -0.761725 kcal Electronic energy + Delta-G solvation = -29493.714570 eV Core-core repulsion = 25457.634988 eV Total energy + Delta-G solvation = -4036.079581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.66208 -39.15891 -37.22071 -37.03105 -35.74632 -34.22005 -33.15314 -31.46523 -30.89164 -29.55756 -28.49032 -27.14735 -25.58606 -24.86247 -24.07460 -23.11894 -22.15296 -21.61114 -20.52748 -20.07801 -19.26163 -17.81227 -16.75694 -16.40404 -16.15060 -15.70342 -15.37114 -15.11330 -14.88230 -14.62153 -14.54436 -14.46964 -14.32804 -14.03185 -13.95461 -13.71251 -13.54028 -13.34948 -13.16219 -12.63682 -12.30871 -11.90737 -11.76988 -11.55814 -11.50328 -11.41463 -11.14930 -10.83495 -10.72465 -10.62398 -10.51875 -10.30122 -10.12312 -9.96254 -9.90845 -9.82498 -9.67128 -8.88867 -8.68262 -8.44314 -8.35496 -6.58706 -5.68233 -3.20790 1.32500 2.32239 2.51041 3.40420 3.47344 3.48954 3.55569 3.63926 4.07307 4.19219 4.28268 4.35861 4.47925 4.64551 4.77745 4.87555 4.96629 4.99048 5.09494 5.25029 5.32065 5.36794 5.41964 5.45896 5.51066 5.58510 5.68797 5.79673 5.82585 5.87204 5.92851 6.12471 6.14394 6.19664 6.31679 6.35258 6.45202 6.57084 6.66720 6.69279 6.72999 6.79374 6.95928 7.53090 7.70949 7.85579 7.92733 8.15242 8.31022 8.59777 9.25176 9.91394 10.41919 11.33562 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.002470 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.366962 B =11331.685012 C =11863.028998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.136 3.864 5 N -0.570 5.570 6 C -0.245 4.245 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.137 3.863 15 C 0.097 3.903 16 N -0.695 5.695 17 C 0.600 3.400 18 O -0.547 6.547 19 C 0.149 3.851 20 N -0.446 5.446 21 C -0.023 4.023 22 C -0.006 4.006 23 N -0.410 5.410 24 C 0.102 3.898 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.047 4.047 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.176 0.824 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 15.499 -18.020 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.289 5.289 6 C -0.374 4.374 7 H 0.076 0.924 8 C -0.177 4.177 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.009 3.991 15 C -0.029 4.029 16 N -0.345 5.345 17 C 0.383 3.617 18 O -0.425 6.425 19 C -0.110 4.110 20 N -0.168 5.168 21 C -0.176 4.176 22 C -0.126 4.126 23 N -0.091 5.091 24 C -0.020 4.020 25 C -0.174 4.174 26 C -0.165 4.165 27 C -0.085 4.085 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.193 0.807 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.103 0.897 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.668 14.707 -17.163 23.867 hybrid contribution -1.003 -0.321 -0.448 1.144 sum -8.670 14.386 -17.610 24.336 Atomic orbital electron populations 1.22633 0.84422 1.01411 0.98376 1.88239 1.16382 1.27444 1.94786 1.23462 0.98690 0.84289 0.96837 1.21172 0.87886 0.96626 0.93357 1.43593 1.74073 1.02385 1.08889 1.18811 1.40938 0.80697 0.96961 0.92392 1.24871 0.96897 0.97647 0.98282 1.69969 1.36280 1.36721 1.10325 0.86386 0.79048 0.84950 0.76794 1.21917 1.21734 1.20315 1.21008 0.92633 0.95005 0.90458 1.22603 1.00965 0.93522 0.85768 1.45810 1.12103 1.51299 1.25298 1.16492 0.85472 0.79247 0.80509 1.90801 1.18059 1.57416 1.76198 1.22670 0.86399 1.06437 0.95511 1.70413 1.18500 1.11858 1.16010 1.21993 0.95862 1.04303 0.95422 1.21314 0.92442 1.02019 0.96820 1.44979 1.09397 1.36053 1.18685 1.22166 0.76661 1.00631 1.02507 1.21953 1.00427 0.99411 0.95570 1.21692 0.95102 1.02267 0.97470 1.20290 0.96557 0.99066 0.92571 0.95637 0.95244 0.90822 0.95867 0.95336 0.87437 0.94030 0.93753 0.92406 0.94054 0.92068 0.91245 0.75543 0.80661 0.87682 0.89167 0.90690 0.89181 0.90282 0.91183 0.89654 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -8.04 9.96 -35.23 -0.35 -8.39 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.14 3.15 5.83 -4.04 -0.02 3.13 16 5 N -0.57 -13.85 2.45 -173.24 -0.43 -14.27 16 6 C -0.24 -6.69 8.74 -15.06 -0.13 -6.82 16 7 H 0.06 1.61 7.94 -52.49 -0.42 1.19 16 8 C 0.02 0.63 4.95 -17.43 -0.09 0.55 16 9 N -0.89 -25.67 11.36 55.49 0.63 -25.04 16 10 Si 0.90 22.61 29.62 -169.99 -5.03 17.57 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.14 2.76 5.82 -4.04 -0.02 2.73 16 15 C 0.10 1.81 6.00 -4.04 -0.02 1.79 16 16 N -0.69 -11.41 5.55 -61.39 -0.34 -11.75 16 17 C 0.60 10.18 7.81 -12.53 -0.10 10.08 16 18 O -0.55 -10.41 15.25 5.27 0.08 -10.33 16 19 C 0.15 2.25 7.82 -154.85 -1.21 1.04 16 20 N -0.45 -6.47 10.92 -11.44 -0.12 -6.59 16 21 C -0.02 -0.26 11.82 -18.07 -0.21 -0.48 16 22 C -0.01 -0.07 6.57 -82.06 -0.54 -0.60 16 23 N -0.41 -5.05 3.14 -110.07 -0.35 -5.40 16 24 C 0.10 1.01 6.10 -3.92 -0.02 0.99 16 25 C -0.14 -0.86 5.93 -26.51 -0.16 -1.01 16 26 C -0.13 -0.69 5.96 -26.41 -0.16 -0.84 16 27 C -0.05 -0.28 6.31 -27.61 -0.17 -0.46 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 33 H 0.11 2.88 5.37 -51.93 -0.28 2.60 16 34 H 0.04 0.87 7.84 -51.93 -0.41 0.46 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 37 H 0.04 0.76 7.86 -51.93 -0.41 0.36 16 38 H 0.06 1.20 6.47 -51.93 -0.34 0.87 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.41 6.08 8.16 -40.82 -0.33 5.75 16 41 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.10 1.17 7.28 -51.93 -0.38 0.80 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -33.28 395.97 -9.40 -42.68 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.94 Total: 2.63 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -1.52 Total: 12.93 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.61 Total: -63.05 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.27 Total: -18.73 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.28 -9.40 -42.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486433558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.917 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds