Wall clock time and date at job start Tue Mar 31 2020 19:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99542 * 2 1 4 4 C 1.53001 * 109.46786 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47340 * 65.00653 * 4 3 2 6 6 C 1.36940 * 119.99764 * 274.46286 * 5 4 3 7 7 H 1.07994 * 119.99827 * 146.16446 * 6 5 4 8 8 C 1.38805 * 120.00003 * 326.16904 * 6 5 4 9 9 N 1.31618 * 120.00283 * 335.30910 * 8 6 5 10 10 Si 1.86802 * 120.00290 * 155.31351 * 8 6 5 11 11 H 1.48507 * 109.47184 * 89.99521 * 10 8 6 12 12 H 1.48499 * 109.47514 * 209.99705 * 10 8 6 13 13 H 1.48501 * 109.47009 * 329.99998 * 10 8 6 14 14 C 1.46499 * 120.00308 * 94.45782 * 5 4 3 15 15 C 1.52998 * 109.47140 * 270.00744 * 14 5 4 16 16 N 1.46508 * 109.46985 * 180.02562 * 15 14 5 17 17 C 1.34770 * 120.00006 * 179.97438 * 16 15 14 18 18 O 1.21612 * 120.00237 * 359.97438 * 17 16 15 19 19 C 1.47405 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31879 * 125.93582 * 359.97438 * 19 17 16 21 21 C 1.33379 * 109.15575 * 179.97438 * 20 19 17 22 22 C 1.34871 * 108.15646 * 359.97438 * 21 20 19 23 23 N 1.35676 * 107.37325 * 0.07232 * 22 21 20 24 24 C 1.46452 * 124.57277 * 179.84813 * 23 22 21 25 25 C 1.53281 * 108.75270 * 342.78578 * 24 23 22 26 26 C 1.53144 * 109.60444 * 50.52389 * 25 24 23 27 27 C 1.50758 * 128.32223 * 180.08534 * 22 21 20 28 28 H 1.09000 * 109.47274 * 299.99128 * 1 2 3 29 29 H 1.08996 * 109.47525 * 59.99872 * 1 2 3 30 30 H 1.09006 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46855 * 60.00533 * 3 2 1 32 32 H 1.08992 * 109.47345 * 300.00679 * 3 2 1 33 33 H 1.09005 * 109.47200 * 305.00255 * 4 3 2 34 34 H 1.08998 * 109.47032 * 185.00335 * 4 3 2 35 35 H 0.96999 * 120.00316 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.46769 * 150.00150 * 14 5 4 37 37 H 1.09000 * 109.46584 * 30.00582 * 14 5 4 38 38 H 1.08996 * 109.47774 * 60.00022 * 15 14 5 39 39 H 1.09000 * 109.47249 * 299.99430 * 15 14 5 40 40 H 0.96997 * 119.99667 * 359.97438 * 16 15 14 41 41 H 1.08000 * 125.91637 * 180.24856 * 21 20 19 42 42 H 1.09002 * 109.58584 * 223.00841 * 24 23 22 43 43 H 1.08993 * 109.70812 * 102.64080 * 24 23 22 44 44 H 1.08999 * 109.45226 * 290.48428 * 25 24 23 45 45 H 1.08999 * 109.44644 * 170.55995 * 25 24 23 46 46 H 1.09000 * 109.50852 * 170.59395 * 26 25 24 47 47 H 1.09003 * 109.51359 * 50.45328 * 26 25 24 48 48 H 1.09003 * 109.73450 * 283.89074 * 27 22 21 49 49 H 1.08999 * 109.73150 * 44.57484 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5647 -1.2528 6 6 4.0092 -0.7995 -1.3664 7 1 3.7902 -1.2680 -2.3145 8 6 4.3248 -1.5803 -0.2630 9 7 5.0420 -1.0744 0.7178 10 14 3.7316 -3.3492 -0.1700 11 1 4.7461 -4.2444 -0.7822 12 1 3.5292 -3.7294 1.2512 13 1 2.4479 -3.4801 -0.9051 14 6 4.3799 1.4041 -2.3834 15 6 3.1608 1.7029 -3.2582 16 7 3.5652 2.5418 -4.3892 17 6 2.6510 2.9328 -5.2990 18 8 1.4904 2.5888 -5.1815 19 6 3.0577 3.7773 -6.4367 20 7 4.2777 4.2166 -6.6772 21 6 4.2673 4.9492 -7.7917 22 6 3.0056 4.9721 -8.2678 23 7 2.2397 4.2391 -7.4211 24 6 0.8010 4.0181 -7.5822 25 6 0.2486 5.0614 -8.5598 26 6 1.1040 5.0791 -9.8299 27 6 2.4846 5.6637 -9.5019 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8901 32 1 1.6884 1.8465 -0.8898 33 1 3.8514 0.5683 0.8409 34 1 3.9784 2.1766 0.0890 35 1 5.2628 -1.6201 1.4887 36 1 5.1315 0.8805 -2.9741 37 1 4.7975 2.3393 -2.0105 38 1 2.4091 2.2265 -2.6676 39 1 2.7431 0.7677 -3.6312 40 1 4.4909 2.8158 -4.4832 41 1 5.1220 5.4357 -8.2381 42 1 0.3049 4.1226 -6.6172 43 1 0.6248 3.0176 -7.9772 44 1 0.2729 6.0457 -8.0922 45 1 -0.7796 4.8080 -8.8182 46 1 0.6185 5.6947 -10.5872 47 1 1.2192 4.0623 -10.2055 48 1 2.3959 6.7338 -9.3144 49 1 3.1650 5.4907 -10.3356 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486433558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:55 Heat of formation + Delta-G solvation = -22.735256 kcal Electronic energy + Delta-G solvation = -29494.667413 eV Core-core repulsion = 25457.634988 eV Total energy + Delta-G solvation = -4037.032425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.58085 -40.51928 -38.92017 -37.72230 -37.42677 -35.78572 -33.92464 -33.38103 -31.85236 -31.05896 -29.74610 -28.56044 -27.16087 -26.03156 -25.31655 -24.36183 -23.14149 -22.90040 -22.18806 -21.41178 -20.03381 -18.98620 -18.62036 -17.59325 -17.32958 -17.17356 -16.79705 -16.52677 -16.37292 -16.22362 -15.65861 -15.45232 -15.27095 -15.12202 -15.04006 -14.89641 -14.81344 -14.75800 -14.29299 -14.18514 -13.62282 -13.42479 -13.06494 -13.01268 -12.69199 -12.47885 -12.39909 -12.31387 -12.11752 -11.96679 -11.94657 -11.90391 -11.75375 -11.54107 -11.39664 -11.22152 -10.76622 -10.46437 -10.38960 -10.17662 -9.38645 -8.59744 -7.76832 -5.31853 0.26189 1.35041 1.45992 1.50129 1.54059 1.60842 2.21348 2.30370 2.59964 3.19633 3.24012 3.36682 3.49969 3.59317 3.72989 3.77519 3.85127 4.12683 4.18233 4.23828 4.27018 4.34739 4.40697 4.50327 4.51268 4.55621 4.62342 4.69955 4.71003 4.80211 4.81397 4.85936 4.88436 4.94555 4.97856 5.06608 5.08907 5.13357 5.26478 5.32132 5.37264 5.61984 5.72559 5.82814 5.88235 6.30073 6.44752 6.66121 6.77840 7.01720 7.22574 7.91112 8.38023 9.20796 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.002470 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.366962 B =11331.685012 C =11863.028998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.054 3.946 4 C 0.134 3.866 5 N -0.585 5.585 6 C -0.244 4.244 7 H 0.045 0.955 8 C -0.019 4.019 9 N -0.913 5.913 10 Si 0.945 3.055 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.142 3.858 15 C 0.121 3.879 16 N -0.690 5.690 17 C 0.599 3.401 18 O -0.576 6.576 19 C 0.106 3.894 20 N -0.461 5.461 21 C -0.040 4.040 22 C 0.013 3.987 23 N -0.411 5.411 24 C 0.095 3.905 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.046 4.046 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.249 0.751 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.417 0.583 41 H 0.206 0.794 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 17.648 -20.417 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.025 4.025 4 C 0.007 3.993 5 N -0.305 5.305 6 C -0.374 4.374 7 H 0.063 0.937 8 C -0.216 4.216 9 N -0.558 5.558 10 Si 0.774 3.226 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.005 4.005 16 N -0.341 5.341 17 C 0.384 3.616 18 O -0.456 6.456 19 C -0.151 4.151 20 N -0.184 5.184 21 C -0.193 4.193 22 C -0.108 4.108 23 N -0.092 5.092 24 C -0.026 4.026 25 C -0.166 4.166 26 C -0.163 4.163 27 C -0.084 4.084 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.254 0.746 41 H 0.223 0.777 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.468 16.867 -19.569 27.187 hybrid contribution -0.778 -0.878 0.164 1.184 sum -9.246 15.989 -19.406 26.790 Atomic orbital electron populations 1.22800 0.82013 1.02460 0.99833 1.88161 1.19177 1.28609 1.95121 1.23309 0.97010 0.84031 0.98153 1.21136 0.89705 0.96703 0.91712 1.43732 1.74624 1.01945 1.10185 1.18865 1.39767 0.82398 0.96393 0.93710 1.25360 0.97550 1.00262 0.98393 1.70066 1.37551 1.37527 1.10680 0.85650 0.78401 0.82147 0.76357 1.21390 1.21937 1.20712 1.21018 0.92883 0.95187 0.89438 1.22060 0.99839 0.92527 0.86035 1.45609 1.12584 1.51072 1.24820 1.16755 0.84954 0.78973 0.80870 1.90769 1.19154 1.58642 1.77029 1.22153 0.87509 1.08884 0.96601 1.70334 1.18460 1.12205 1.17368 1.22633 0.97573 1.04317 0.94826 1.22138 0.91881 0.99782 0.96972 1.45203 1.10167 1.35605 1.18220 1.22333 0.75658 1.01952 1.02686 1.21980 1.01503 0.98047 0.95055 1.21725 0.94650 1.02528 0.97368 1.20568 0.97258 0.99633 0.90964 0.93251 0.94558 0.90103 0.93418 0.94848 0.90727 0.92046 0.94161 0.92929 0.91875 0.92730 0.94069 0.74573 0.77727 0.89657 0.89666 0.90400 0.87200 0.87377 0.91835 0.87574 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.39 -17.92 9.96 -148.98 -1.48 -19.40 16 3 C 0.05 2.21 6.28 71.98 0.45 2.66 16 4 C 0.13 6.21 5.83 86.38 0.50 6.71 16 5 N -0.58 -28.77 2.45 -702.02 -1.72 -30.49 16 6 C -0.24 -13.60 8.74 84.03 0.73 -12.86 16 7 H 0.05 2.57 7.94 -2.91 -0.02 2.55 16 8 C -0.02 -1.05 4.95 84.86 0.42 -0.63 16 9 N -0.91 -53.69 11.36 21.65 0.25 -53.44 16 10 Si 0.94 47.22 29.62 68.60 2.03 49.25 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 13 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 14 C 0.14 5.75 5.82 86.38 0.50 6.26 16 15 C 0.12 4.67 6.00 86.38 0.52 5.19 16 16 N -0.69 -23.21 5.55 -466.39 -2.59 -25.80 16 17 C 0.60 21.01 7.81 86.66 0.68 21.69 16 18 O -0.58 -22.84 15.25 -4.07 -0.06 -22.91 16 19 C 0.11 3.20 7.82 136.39 1.07 4.27 16 20 N -0.46 -13.14 10.92 -190.12 -2.08 -15.21 16 21 C -0.04 -0.85 11.82 83.68 0.99 0.14 16 22 C 0.01 0.24 6.57 41.21 0.27 0.51 16 23 N -0.41 -9.83 3.14 -502.15 -1.58 -11.41 16 24 C 0.09 1.85 6.10 86.48 0.53 2.37 16 25 C -0.13 -1.29 5.93 30.74 0.18 -1.11 16 26 C -0.13 -0.87 5.96 30.80 0.18 -0.69 16 27 C -0.05 -0.37 6.31 30.02 0.19 -0.18 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 1.34 6.46 -2.39 -0.02 1.32 16 33 H 0.08 4.06 5.37 -2.38 -0.01 4.05 16 34 H 0.06 2.53 7.84 -2.39 -0.02 2.51 16 35 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 37 H 0.06 2.29 7.86 -2.39 -0.02 2.27 16 38 H 0.05 2.18 6.47 -2.39 -0.02 2.16 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.42 12.58 8.16 -92.71 -0.76 11.83 16 41 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.09 1.98 7.28 -2.39 -0.02 1.97 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 45 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.06 0.56 8.12 -2.39 -0.02 0.54 16 48 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -74.29 395.97 1.43 -72.86 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.20 Total: 20.08 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 8.46 Total: 36.47 kcal Atomic # 7 Polarization: -128.63 SS G_CDS: -7.72 Total: -136.35 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.55 Total: -42.31 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -74.29 1.43 -72.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486433558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.124 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds