Wall clock time and date at job start Tue Mar 31 2020 19:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.24328 * 2 1 4 4 C 1.54834 * 109.36245 * 119.65637 * 2 1 3 5 5 C 1.50129 * 110.81866 * 81.33962 * 4 2 1 6 6 H 1.09000 * 110.24316 * 338.57459 * 5 4 2 7 7 N 1.46491 * 110.25046 * 216.65978 * 5 4 2 8 8 C 1.34781 * 119.99996 * 155.00121 * 7 5 4 9 9 O 1.21278 * 120.00034 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00128 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.46933 * 180.02562 * 10 8 7 12 12 N 1.46501 * 109.46681 * 180.02562 * 11 10 8 13 13 C 1.34596 * 126.43662 * 124.71134 * 12 11 10 14 14 N 1.31075 * 106.68191 * 179.87140 * 13 12 11 15 15 N 1.28841 * 107.98525 * 0.39046 * 14 13 12 16 16 N 1.28737 * 109.40134 * 359.74547 * 15 14 13 17 17 C 1.52530 * 105.41101 * 97.68529 * 5 4 2 18 18 C 1.46240 * 114.27891 * 270.59372 * 17 5 4 19 19 N 1.50169 * 107.53090 * 58.41147 * 18 17 5 20 20 C 1.36936 * 120.53780 * 109.61164 * 19 18 17 21 21 H 1.07995 * 120.00213 * 156.65295 * 20 19 18 22 22 C 1.38814 * 119.99635 * 336.65342 * 20 19 18 23 23 N 1.31620 * 120.00316 * 340.43756 * 22 20 19 24 24 Si 1.86804 * 119.99721 * 160.43674 * 22 20 19 25 25 H 1.48504 * 109.47164 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47216 * 119.99837 * 24 22 20 27 27 H 1.48498 * 109.46753 * 240.00182 * 24 22 20 28 28 C 1.43436 * 118.92650 * 289.59215 * 19 18 17 29 29 H 1.08997 * 109.47627 * 300.33976 * 1 2 3 30 30 H 1.09005 * 109.47285 * 60.34857 * 1 2 3 31 31 H 1.09004 * 109.47138 * 180.33970 * 1 2 3 32 32 H 1.08998 * 109.46817 * 179.66370 * 3 2 1 33 33 H 1.08996 * 109.46861 * 299.65531 * 3 2 1 34 34 H 1.08992 * 109.47248 * 59.66018 * 3 2 1 35 35 H 1.09001 * 109.21038 * 320.99344 * 4 2 1 36 36 H 1.09002 * 109.17450 * 201.66536 * 4 2 1 37 37 H 0.97000 * 120.00420 * 334.99279 * 7 5 4 38 38 H 1.08998 * 109.47108 * 59.99614 * 10 8 7 39 39 H 1.09004 * 109.46935 * 300.00041 * 10 8 7 40 40 H 1.08998 * 109.47646 * 59.99812 * 11 10 8 41 41 H 1.09000 * 109.46817 * 299.99123 * 11 10 8 42 42 H 1.08004 * 126.66567 * 0.02562 * 13 12 11 43 43 H 1.09001 * 108.52472 * 31.83716 * 17 5 4 44 44 H 1.09000 * 108.52052 * 149.35242 * 17 5 4 45 45 H 1.08996 * 109.84309 * 298.90826 * 18 17 5 46 46 H 1.08996 * 109.84805 * 177.92021 * 18 17 5 47 47 H 0.96997 * 120.00025 * 179.97438 * 23 22 20 48 48 H 1.09003 * 108.16124 * 329.84591 * 28 19 18 49 49 H 1.09004 * 107.99718 * 213.16445 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0342 1.4446 0.0000 4 6 2.0433 -0.7228 1.2694 5 6 2.0208 -2.2121 1.0813 6 1 1.3237 -2.4816 0.2880 7 7 1.6452 -2.8755 2.3322 8 6 1.0804 -4.0989 2.3030 9 8 0.8836 -4.6507 1.2411 10 6 0.6946 -4.7817 3.5898 11 6 0.0799 -6.1476 3.2780 12 7 -0.2958 -6.8111 4.5290 13 6 -1.5145 -7.2850 4.8478 14 7 -1.4154 -7.8004 6.0489 15 7 -0.2012 -7.6433 6.4503 16 7 0.4781 -7.0460 5.5342 17 6 3.4448 -2.5926 0.6888 18 6 3.7001 -2.5623 -0.7509 19 7 3.4057 -1.1710 -1.2333 20 6 4.4211 -0.3434 -1.6321 21 1 4.2179 0.4734 -2.3088 22 6 5.7118 -0.5544 -1.1666 23 7 5.9107 -1.2692 -0.0795 24 14 7.1663 0.1763 -2.0832 25 1 6.6780 0.9312 -3.2651 26 1 7.9093 1.0932 -1.1820 27 1 8.0677 -0.9153 -2.5315 28 6 2.0435 -0.7231 -1.2699 29 1 -0.3634 0.5191 0.8869 30 1 -0.3634 0.5084 -0.8931 31 1 -0.3633 -1.0277 0.0061 32 1 3.1242 1.4489 0.0060 33 1 1.6739 1.9552 -0.8930 34 1 1.6639 1.9587 0.8868 35 1 1.4076 -0.4584 2.1145 36 1 3.0647 -0.4026 1.4753 37 1 1.8031 -2.4344 3.1816 38 1 -0.0324 -4.1687 4.1226 39 1 1.5809 -4.9156 4.2100 40 1 0.8071 -6.7604 2.7454 41 1 -0.8064 -6.0141 2.6577 42 1 -2.4014 -7.2500 4.2324 43 1 4.1344 -1.9041 1.1773 44 1 3.6478 -3.5988 1.0553 45 1 3.0491 -3.2749 -1.2571 46 1 4.7435 -2.8089 -0.9469 47 1 6.8126 -1.4170 0.2455 48 1 1.4059 -1.5888 -1.4492 49 1 1.9351 -0.0435 -2.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489349050.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:55 Heat of formation + Delta-G solvation = 104.132597 kcal Electronic energy + Delta-G solvation = -30207.465129 eV Core-core repulsion = 26208.226858 eV Total energy + Delta-G solvation = -3999.238271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.45013 -40.10767 -38.45507 -36.33516 -34.75912 -34.46218 -32.81411 -32.15328 -31.29866 -30.51197 -27.70739 -26.74540 -26.07818 -25.56150 -24.10934 -23.52791 -22.79613 -21.61687 -20.36320 -20.01745 -18.41813 -17.93122 -17.35904 -16.76388 -16.62599 -16.10065 -15.93327 -15.71521 -15.10786 -14.27596 -14.23633 -14.05749 -13.68259 -13.55467 -13.38877 -13.21645 -13.01268 -12.63509 -12.46074 -12.39003 -11.95955 -11.88160 -11.73674 -11.51600 -11.45752 -11.29881 -11.17191 -10.95551 -10.90381 -10.77248 -10.64098 -10.63516 -10.29145 -10.12068 -10.08912 -9.78705 -9.67724 -9.56374 -9.30754 -8.77248 -8.39512 -6.75415 -5.83772 -3.21935 0.95239 1.62184 1.97178 2.58061 3.22771 3.33883 3.43568 3.44755 3.85752 3.93352 4.16173 4.46968 4.47926 4.59598 4.84852 4.99449 5.14986 5.16683 5.24354 5.33554 5.40909 5.44393 5.44944 5.53986 5.78056 5.82149 5.91767 5.98514 6.07824 6.20236 6.23519 6.29622 6.38036 6.49200 6.53162 6.65270 6.72191 6.83598 6.90566 6.96777 7.00799 7.15479 7.18183 7.50606 7.63561 7.69680 7.89590 8.24066 8.31477 8.38228 9.14576 9.82597 10.35581 11.23329 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.002595 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.152090 B =10785.716383 C =11706.996422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.102 4.102 5 C 0.145 3.855 6 H 0.088 0.912 7 N -0.713 5.713 8 C 0.518 3.482 9 O -0.542 6.542 10 C -0.158 4.158 11 C 0.131 3.869 12 N -0.307 5.307 13 C 0.160 3.840 14 N -0.311 5.311 15 N -0.079 5.079 16 N -0.091 5.091 17 C -0.132 4.132 18 C 0.168 3.832 19 N -0.585 5.585 20 C -0.241 4.241 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.900 5.900 24 Si 0.897 3.103 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.291 1.291 28 C 0.166 3.834 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.033 0.967 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.235 0.765 43 H 0.103 0.897 44 H 0.028 0.972 45 H 0.008 0.992 46 H 0.091 0.909 47 H 0.251 0.749 48 H 0.028 0.972 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.839 -4.391 6.383 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.186 4.186 4 C -0.140 4.140 5 C 0.042 3.958 6 H 0.106 0.894 7 N -0.362 5.362 8 C 0.302 3.698 9 O -0.420 6.420 10 C -0.199 4.199 11 C 0.009 3.991 12 N -0.109 5.109 13 C -0.138 4.138 14 N -0.159 5.159 15 N -0.073 5.073 16 N -0.077 5.077 17 C -0.172 4.172 18 C 0.044 3.956 19 N -0.305 5.305 20 C -0.371 4.371 21 H 0.085 0.915 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.217 1.217 28 C 0.036 3.964 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.251 0.749 43 H 0.121 0.879 44 H 0.047 0.953 45 H 0.027 0.973 46 H 0.109 0.891 47 H 0.061 0.939 48 H 0.047 0.953 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.098 -5.166 6.825 15.647 hybrid contribution 0.488 1.008 -0.730 1.336 sum -12.611 -4.158 6.095 14.611 Atomic orbital electron populations 1.21847 0.96230 1.00662 1.00565 1.21932 0.93160 0.96216 0.97972 1.21746 1.02890 0.94775 0.99215 1.21792 1.02354 0.93122 0.96720 1.20575 0.98496 0.92259 0.84490 0.89440 1.46258 1.61300 1.17823 1.10816 1.19958 0.78002 0.81979 0.89867 1.90744 1.55091 1.64425 1.31770 1.21921 1.04263 0.95259 0.98504 1.22042 1.04573 0.93425 0.79017 1.48872 1.07847 1.38821 1.15343 1.27782 0.92001 0.98195 0.95853 1.75011 1.12448 1.19614 1.08823 1.78660 0.97398 1.12276 1.18969 1.78904 1.20413 1.15186 0.93204 1.21342 0.94170 1.00626 1.01045 1.20099 1.00785 0.83869 0.90829 1.44265 1.01060 1.10024 1.75190 1.19204 0.87272 1.10357 1.20270 0.91502 1.24866 0.98184 1.00311 0.96237 1.69954 1.20083 1.43904 1.20611 0.86312 0.83154 0.78310 0.79509 1.20461 1.22006 1.21745 1.20521 0.86923 0.95576 0.93351 0.93774 0.93239 0.93452 0.90905 0.93865 0.94828 0.94080 0.89952 0.77006 0.88105 0.86987 0.86439 0.85806 0.74887 0.87905 0.95332 0.97348 0.89050 0.93865 0.95331 0.94801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.20 37.15 0.30 -1.56 16 2 C -0.09 -1.46 0.76 -152.54 -0.12 -1.58 16 3 C -0.13 -2.16 8.29 37.16 0.31 -1.85 16 4 C -0.10 -1.66 4.15 -27.19 -0.11 -1.77 16 5 C 0.14 2.37 2.16 -69.60 -0.15 2.22 16 6 H 0.09 1.59 5.16 -51.93 -0.27 1.33 16 7 N -0.71 -9.00 4.95 -55.45 -0.27 -9.27 16 8 C 0.52 6.16 7.83 -10.98 -0.09 6.07 16 9 O -0.54 -8.38 15.63 5.56 0.09 -8.30 16 10 C -0.16 -1.21 5.84 -27.88 -0.16 -1.38 16 11 C 0.13 0.88 5.77 -4.04 -0.02 0.86 16 12 N -0.31 -2.56 3.44 -62.55 -0.22 -2.77 16 13 C 0.16 1.17 12.79 -90.39 -1.16 0.01 16 14 N -0.31 -3.51 12.36 29.59 0.37 -3.15 16 15 N -0.08 -1.03 13.43 60.35 0.81 -0.22 16 16 N -0.09 -1.05 13.07 60.35 0.79 -0.27 16 17 C -0.13 -2.63 4.74 -30.18 -0.14 -2.78 16 18 C 0.17 3.76 5.25 -5.20 -0.03 3.73 16 19 N -0.59 -13.24 2.60 -175.08 -0.46 -13.69 16 20 C -0.24 -6.03 8.98 -15.06 -0.14 -6.17 16 21 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 22 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 23 N -0.90 -23.38 9.43 55.49 0.52 -22.85 16 24 Si 0.90 20.67 29.60 -169.99 -5.03 15.64 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.17 3.21 4.01 -4.66 -0.02 3.19 16 29 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.65 7.57 -51.93 -0.39 0.26 16 32 H 0.07 1.45 7.48 -51.93 -0.39 1.06 16 33 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.58 7.68 -51.93 -0.40 0.18 16 36 H 0.08 1.61 6.65 -51.93 -0.35 1.27 16 37 H 0.40 4.01 8.53 -40.82 -0.35 3.67 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.12 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.12 0.58 8.04 -51.93 -0.42 0.16 16 42 H 0.24 0.46 8.06 -52.48 -0.42 0.04 16 43 H 0.10 2.33 5.29 -51.93 -0.27 2.06 16 44 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 45 H 0.01 0.18 8.12 -51.93 -0.42 -0.24 16 46 H 0.09 2.31 6.05 -51.93 -0.31 1.99 16 47 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 48 H 0.03 0.54 6.69 -51.93 -0.35 0.20 16 49 H 0.03 0.67 7.81 -51.93 -0.41 0.26 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -30.59 383.75 -6.89 -37.48 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.67 Total: 2.65 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.60 Total: -1.03 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 1.54 Total: -52.23 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.59 -6.89 -37.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489349050.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.615 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds