Wall clock time and date at job start Tue Mar 31 2020 19:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.24328 * 2 1 4 4 C 1.54834 * 109.36245 * 119.65637 * 2 1 3 5 5 C 1.50129 * 110.81866 * 81.33962 * 4 2 1 6 6 H 1.09000 * 110.24316 * 338.57459 * 5 4 2 7 7 N 1.46491 * 110.25046 * 216.65978 * 5 4 2 8 8 C 1.34781 * 119.99996 * 155.00121 * 7 5 4 9 9 O 1.21278 * 120.00034 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00128 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.46933 * 180.02562 * 10 8 7 12 12 N 1.46501 * 109.46681 * 180.02562 * 11 10 8 13 13 C 1.34596 * 126.43662 * 124.71134 * 12 11 10 14 14 N 1.31075 * 106.68191 * 179.87140 * 13 12 11 15 15 N 1.28841 * 107.98525 * 0.39046 * 14 13 12 16 16 N 1.28737 * 109.40134 * 359.74547 * 15 14 13 17 17 C 1.52530 * 105.41101 * 97.68529 * 5 4 2 18 18 C 1.46240 * 114.27891 * 270.59372 * 17 5 4 19 19 N 1.50169 * 107.53090 * 58.41147 * 18 17 5 20 20 C 1.36936 * 120.53780 * 109.61164 * 19 18 17 21 21 H 1.07995 * 120.00213 * 156.65295 * 20 19 18 22 22 C 1.38814 * 119.99635 * 336.65342 * 20 19 18 23 23 N 1.31620 * 120.00316 * 340.43756 * 22 20 19 24 24 Si 1.86804 * 119.99721 * 160.43674 * 22 20 19 25 25 H 1.48504 * 109.47164 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47216 * 119.99837 * 24 22 20 27 27 H 1.48498 * 109.46753 * 240.00182 * 24 22 20 28 28 C 1.43436 * 118.92650 * 289.59215 * 19 18 17 29 29 H 1.08997 * 109.47627 * 300.33976 * 1 2 3 30 30 H 1.09005 * 109.47285 * 60.34857 * 1 2 3 31 31 H 1.09004 * 109.47138 * 180.33970 * 1 2 3 32 32 H 1.08998 * 109.46817 * 179.66370 * 3 2 1 33 33 H 1.08996 * 109.46861 * 299.65531 * 3 2 1 34 34 H 1.08992 * 109.47248 * 59.66018 * 3 2 1 35 35 H 1.09001 * 109.21038 * 320.99344 * 4 2 1 36 36 H 1.09002 * 109.17450 * 201.66536 * 4 2 1 37 37 H 0.97000 * 120.00420 * 334.99279 * 7 5 4 38 38 H 1.08998 * 109.47108 * 59.99614 * 10 8 7 39 39 H 1.09004 * 109.46935 * 300.00041 * 10 8 7 40 40 H 1.08998 * 109.47646 * 59.99812 * 11 10 8 41 41 H 1.09000 * 109.46817 * 299.99123 * 11 10 8 42 42 H 1.08004 * 126.66567 * 0.02562 * 13 12 11 43 43 H 1.09001 * 108.52472 * 31.83716 * 17 5 4 44 44 H 1.09000 * 108.52052 * 149.35242 * 17 5 4 45 45 H 1.08996 * 109.84309 * 298.90826 * 18 17 5 46 46 H 1.08996 * 109.84805 * 177.92021 * 18 17 5 47 47 H 0.96997 * 120.00025 * 179.97438 * 23 22 20 48 48 H 1.09003 * 108.16124 * 329.84591 * 28 19 18 49 49 H 1.09004 * 107.99718 * 213.16445 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0342 1.4446 0.0000 4 6 2.0433 -0.7228 1.2694 5 6 2.0208 -2.2121 1.0813 6 1 1.3237 -2.4816 0.2880 7 7 1.6452 -2.8755 2.3322 8 6 1.0804 -4.0989 2.3030 9 8 0.8836 -4.6507 1.2411 10 6 0.6946 -4.7817 3.5898 11 6 0.0799 -6.1476 3.2780 12 7 -0.2958 -6.8111 4.5290 13 6 -1.5145 -7.2850 4.8478 14 7 -1.4154 -7.8004 6.0489 15 7 -0.2012 -7.6433 6.4503 16 7 0.4781 -7.0460 5.5342 17 6 3.4448 -2.5926 0.6888 18 6 3.7001 -2.5623 -0.7509 19 7 3.4057 -1.1710 -1.2333 20 6 4.4211 -0.3434 -1.6321 21 1 4.2179 0.4734 -2.3088 22 6 5.7118 -0.5544 -1.1666 23 7 5.9107 -1.2692 -0.0795 24 14 7.1663 0.1763 -2.0832 25 1 6.6780 0.9312 -3.2651 26 1 7.9093 1.0932 -1.1820 27 1 8.0677 -0.9153 -2.5315 28 6 2.0435 -0.7231 -1.2699 29 1 -0.3634 0.5191 0.8869 30 1 -0.3634 0.5084 -0.8931 31 1 -0.3633 -1.0277 0.0061 32 1 3.1242 1.4489 0.0060 33 1 1.6739 1.9552 -0.8930 34 1 1.6639 1.9587 0.8868 35 1 1.4076 -0.4584 2.1145 36 1 3.0647 -0.4026 1.4753 37 1 1.8031 -2.4344 3.1816 38 1 -0.0324 -4.1687 4.1226 39 1 1.5809 -4.9156 4.2100 40 1 0.8071 -6.7604 2.7454 41 1 -0.8064 -6.0141 2.6577 42 1 -2.4014 -7.2500 4.2324 43 1 4.1344 -1.9041 1.1773 44 1 3.6478 -3.5988 1.0553 45 1 3.0491 -3.2749 -1.2571 46 1 4.7435 -2.8089 -0.9469 47 1 6.8126 -1.4170 0.2455 48 1 1.4059 -1.5888 -1.4492 49 1 1.9351 -0.0435 -2.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489349050.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:53 Heat of formation + Delta-G solvation = 84.821002 kcal Electronic energy + Delta-G solvation = -30208.302543 eV Core-core repulsion = 26208.226858 eV Total energy + Delta-G solvation = -4000.075685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.16260 -41.26741 -39.78119 -37.07697 -36.21405 -35.90499 -33.58440 -33.35569 -32.73730 -31.84170 -29.11843 -28.02500 -27.29528 -26.85131 -25.07633 -24.78528 -23.76170 -22.95239 -21.62707 -21.36292 -19.50879 -18.92531 -18.55769 -18.06304 -17.53002 -17.15449 -16.90590 -16.61758 -16.61339 -15.84515 -15.48985 -15.26720 -15.21322 -14.82927 -14.55678 -14.27206 -14.00361 -13.85777 -13.64477 -13.46006 -13.25313 -13.17668 -13.02115 -12.86779 -12.69405 -12.53471 -12.47323 -12.32744 -12.24113 -12.18655 -11.90426 -11.85236 -11.65698 -11.51075 -11.39801 -11.35317 -11.10516 -10.98313 -10.80776 -10.46425 -9.87769 -8.60625 -7.78836 -5.17440 0.29152 1.01719 1.24173 1.46027 1.51608 1.58193 1.63114 2.27743 2.56240 3.27304 3.34558 3.49330 3.57211 3.60042 3.79850 3.89999 4.01069 4.09846 4.10928 4.29274 4.37520 4.46274 4.50257 4.51373 4.57893 4.67323 4.77931 4.81957 4.83013 4.93079 4.95889 5.00059 5.10468 5.14168 5.24086 5.26205 5.29144 5.34093 5.37407 5.49685 5.56381 5.67947 5.70500 5.75830 5.82794 6.12788 6.45881 6.60543 7.21105 7.27828 7.57850 7.94783 8.46085 9.25571 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.002595 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.152090 B =10785.716383 C =11706.996422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.123 4.123 4 C -0.092 4.092 5 C 0.163 3.837 6 H 0.076 0.924 7 N -0.710 5.710 8 C 0.520 3.480 9 O -0.577 6.577 10 C -0.145 4.145 11 C 0.131 3.869 12 N -0.302 5.302 13 C 0.183 3.817 14 N -0.345 5.345 15 N -0.113 5.113 16 N -0.112 5.112 17 C -0.118 4.118 18 C 0.173 3.827 19 N -0.596 5.596 20 C -0.241 4.241 21 H 0.061 0.939 22 C -0.041 4.041 23 N -0.915 5.915 24 Si 0.948 3.052 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.298 1.298 28 C 0.162 3.838 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.411 0.589 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.154 0.846 42 H 0.287 0.713 43 H 0.075 0.925 44 H 0.020 0.980 45 H 0.009 0.991 46 H 0.057 0.943 47 H 0.244 0.756 48 H 0.032 0.968 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.762 -3.848 6.844 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 C -0.180 4.180 4 C -0.131 4.131 5 C 0.059 3.941 6 H 0.094 0.906 7 N -0.360 5.360 8 C 0.307 3.693 9 O -0.457 6.457 10 C -0.185 4.185 11 C 0.011 3.989 12 N -0.104 5.104 13 C -0.115 4.115 14 N -0.193 5.193 15 N -0.107 5.107 16 N -0.100 5.100 17 C -0.158 4.158 18 C 0.049 3.951 19 N -0.317 5.317 20 C -0.372 4.372 21 H 0.079 0.921 22 C -0.237 4.237 23 N -0.562 5.562 24 Si 0.779 3.221 25 H -0.199 1.199 26 H -0.224 1.224 27 H -0.225 1.225 28 C 0.034 3.966 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.247 0.753 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.172 0.828 42 H 0.302 0.698 43 H 0.094 0.906 44 H 0.039 0.961 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.045 -4.610 7.307 18.224 hybrid contribution 1.352 0.825 -0.979 1.862 sum -14.693 -3.785 6.329 16.440 Atomic orbital electron populations 1.21750 0.93205 1.01348 1.02084 1.21836 0.95428 0.95474 0.96135 1.21662 1.00285 0.95357 1.00692 1.21630 1.00840 0.92785 0.97799 1.20081 0.95522 0.92584 0.85944 0.90595 1.46094 1.61420 1.18370 1.10127 1.20580 0.76711 0.81214 0.90828 1.90736 1.56334 1.65049 1.33596 1.21813 1.05084 0.95706 0.95913 1.22175 1.05819 0.92489 0.78416 1.48940 1.07948 1.38560 1.14979 1.28710 0.92664 0.95293 0.94793 1.74941 1.12106 1.21288 1.10998 1.78642 0.98393 1.13564 1.20130 1.78844 1.21324 1.15773 0.94018 1.21111 0.96353 0.99302 0.99003 1.19929 0.98700 0.83994 0.92523 1.44302 1.01951 1.09843 1.75610 1.19298 0.88107 1.10057 1.19718 0.92116 1.25392 0.99890 1.01404 0.97024 1.70095 1.19647 1.45016 1.21395 0.85501 0.80778 0.77294 0.78568 1.19922 1.22442 1.22503 1.20641 0.85252 0.95889 0.94851 0.91612 0.92409 0.93177 0.94825 0.93181 0.92506 0.90875 0.93574 0.75263 0.85391 0.86970 0.87299 0.82827 0.69763 0.90629 0.96147 0.97246 0.92473 0.94626 0.94928 0.95439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.20 71.98 0.59 -2.43 16 2 C -0.08 -2.66 0.76 -50.91 -0.04 -2.70 16 3 C -0.12 -3.94 8.29 71.99 0.60 -3.34 16 4 C -0.09 -2.88 4.15 30.30 0.13 -2.75 16 5 C 0.16 5.18 2.16 43.91 0.09 5.27 16 6 H 0.08 2.66 5.16 -2.39 -0.01 2.65 16 7 N -0.71 -16.44 4.95 -447.72 -2.22 -18.65 16 8 C 0.52 11.16 7.83 87.66 0.69 11.84 16 9 O -0.58 -16.81 15.63 -3.02 -0.05 -16.86 16 10 C -0.14 -1.77 5.84 29.85 0.17 -1.59 16 11 C 0.13 1.37 5.77 86.38 0.50 1.87 16 12 N -0.30 -4.23 3.44 -351.82 -1.21 -5.44 16 13 C 0.18 2.06 12.79 180.27 2.31 4.37 16 14 N -0.34 -7.26 12.36 -60.29 -0.74 -8.00 16 15 N -0.11 -2.90 13.43 37.01 0.50 -2.40 16 16 N -0.11 -2.48 13.07 37.02 0.48 -2.00 16 17 C -0.12 -4.81 4.74 28.36 0.13 -4.67 16 18 C 0.17 7.99 5.25 83.58 0.44 8.42 16 19 N -0.60 -27.57 2.60 -707.83 -1.84 -29.41 16 20 C -0.24 -12.37 8.98 84.03 0.75 -11.62 16 21 H 0.06 3.14 7.88 -2.91 -0.02 3.12 16 22 C -0.04 -2.17 4.91 84.86 0.42 -1.75 16 23 N -0.91 -49.39 9.43 21.65 0.20 -49.19 16 24 Si 0.95 43.58 29.60 68.60 2.03 45.61 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 28 C 0.16 6.21 4.01 87.59 0.35 6.56 16 29 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 30 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 1.19 7.57 -2.39 -0.02 1.17 16 32 H 0.03 1.33 7.48 -2.39 -0.02 1.31 16 33 H 0.05 1.51 8.12 -2.39 -0.02 1.49 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.80 7.68 -2.39 -0.02 1.79 16 36 H 0.05 1.81 6.65 -2.39 -0.02 1.79 16 37 H 0.41 7.23 8.53 -92.71 -0.79 6.44 16 38 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.11 1.40 8.10 -2.39 -0.02 1.38 16 41 H 0.15 0.74 8.04 -2.39 -0.02 0.72 16 42 H 0.29 -0.39 8.06 -2.91 -0.02 -0.41 16 43 H 0.08 3.55 5.29 -2.39 -0.01 3.54 16 44 H 0.02 0.83 8.02 -2.39 -0.02 0.81 16 45 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 46 H 0.06 3.02 6.05 -2.39 -0.01 3.01 16 47 H 0.24 13.10 8.31 -92.71 -0.77 12.33 16 48 H 0.03 1.21 6.69 -2.39 -0.02 1.20 16 49 H 0.03 1.08 7.81 -2.38 -0.02 1.06 16 Total: -1.00 -70.82 383.75 4.46 -66.36 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.18 Total: 12.47 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 7.13 Total: 7.49 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -4.83 Total: -115.09 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.05 Total: -16.86 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.82 4.46 -66.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489349050.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.184 kcal (2) G-P(sol) polarization free energy of solvation -70.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds