Wall clock time and date at job start Tue Mar 31 2020 19:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46913 * 2 1 4 4 C 1.50696 * 109.47349 * 119.99579 * 2 1 3 5 5 N 1.31068 * 126.66365 * 300.17944 * 4 2 1 6 6 N 1.28840 * 107.99636 * 180.23941 * 5 4 2 7 7 N 1.28739 * 109.39379 * 359.74854 * 6 5 4 8 8 N 1.29020 * 108.81047 * 0.02562 * 7 6 5 9 9 C 1.46497 * 126.44044 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47387 * 90.02654 * 9 8 7 11 11 O 1.21286 * 119.99431 * 0.02562 * 10 9 8 12 12 N 1.34766 * 120.00319 * 180.02562 * 10 9 8 13 13 C 1.46924 * 120.63242 * 0.02562 * 12 10 9 14 14 C 1.53191 * 108.77817 * 126.37005 * 13 12 10 15 15 C 1.53042 * 109.31021 * 54.63576 * 14 13 12 16 16 C 1.53035 * 109.54021 * 298.63480 * 15 14 13 17 17 H 1.09001 * 109.49969 * 301.41757 * 16 15 14 18 18 C 1.52998 * 109.50087 * 181.31694 * 16 15 14 19 19 N 1.46496 * 109.47511 * 175.16680 * 18 16 15 20 20 C 1.36940 * 120.00122 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99835 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99996 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00132 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00201 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47448 * 59.99406 * 24 22 20 26 26 H 1.48495 * 109.47411 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47315 * 299.99835 * 24 22 20 28 28 C 1.46929 * 120.63348 * 180.02562 * 12 10 9 29 29 H 1.08994 * 109.47335 * 300.00288 * 1 2 3 30 30 H 1.08999 * 109.46815 * 60.00616 * 1 2 3 31 31 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47318 * 240.00058 * 2 1 3 33 33 H 1.08998 * 109.46928 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47149 * 299.99713 * 3 2 1 35 35 H 1.09001 * 109.47081 * 59.99913 * 3 2 1 36 36 H 1.09003 * 109.47396 * 330.02119 * 9 8 7 37 37 H 1.09005 * 109.47511 * 210.02359 * 9 8 7 38 38 H 1.08999 * 109.58511 * 6.58326 * 13 12 10 39 39 H 1.08999 * 109.58969 * 246.15926 * 13 12 10 40 40 H 1.09006 * 109.49784 * 294.68835 * 14 13 12 41 41 H 1.08997 * 109.52766 * 174.60233 * 14 13 12 42 42 H 1.09004 * 109.46156 * 178.61474 * 15 14 13 43 43 H 1.09003 * 109.44815 * 58.65469 * 15 14 13 44 44 H 1.09008 * 109.47175 * 295.16379 * 18 16 15 45 45 H 1.08999 * 109.47184 * 55.16252 * 18 16 15 46 46 H 0.97003 * 119.99766 * 359.97438 * 19 18 16 47 47 H 0.96994 * 120.00373 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.59209 * 113.83860 * 28 12 10 49 49 H 1.09003 * 109.58217 * 353.41142 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7950 -0.3801 2.4765 6 7 2.4015 -1.2267 3.2351 7 7 3.0154 -2.0915 2.5052 8 7 2.8097 -1.8087 1.2633 9 6 3.3291 -2.5420 0.1063 10 6 2.3502 -3.6181 -0.2871 11 8 1.3199 -3.7584 0.3372 12 7 2.6197 -4.4246 -1.3327 13 6 3.8638 -4.2674 -2.0983 14 6 4.5859 -5.6175 -2.1485 15 6 3.6351 -6.6796 -2.7055 16 6 2.4217 -6.8148 -1.7828 17 1 2.7549 -7.0864 -0.7811 18 6 1.4878 -7.8998 -2.3227 19 7 0.3863 -8.1095 -1.3800 20 6 -0.5808 -9.0399 -1.6530 21 1 -0.5316 -9.6187 -2.5634 22 6 -1.6249 -9.2382 -0.7599 23 7 -1.6851 -8.5324 0.3494 24 14 -2.9444 -10.5067 -1.1325 25 1 -2.3200 -11.8483 -1.2582 26 1 -3.9386 -10.5254 -0.0297 27 1 -3.6233 -10.1556 -2.4057 28 6 1.6749 -5.4779 -1.7287 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 4.2854 -2.9972 0.3640 37 1 3.4673 -1.8540 -0.7278 38 1 4.5017 -3.5298 -1.6114 39 1 3.6305 -3.9399 -3.1114 40 1 4.8986 -5.9005 -1.1434 41 1 5.4611 -5.5388 -2.7933 42 1 4.1541 -7.6362 -2.7654 43 1 3.3033 -6.3836 -3.7007 44 1 1.0864 -7.5869 -3.2867 45 1 2.0434 -8.8295 -2.4450 46 1 0.3423 -7.5898 -0.5621 47 1 -2.4144 -8.6712 0.9736 48 1 1.2633 -5.2490 -2.7117 49 1 0.8686 -5.5391 -0.9978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491175037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:04 Heat of formation + Delta-G solvation = 86.888903 kcal Electronic energy + Delta-G solvation = -30029.212192 eV Core-core repulsion = 26029.226178 eV Total energy + Delta-G solvation = -3999.986014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.29202 -40.49967 -37.98874 -36.42700 -35.52329 -35.08554 -33.13690 -31.87505 -31.60344 -30.18092 -29.18717 -27.54434 -25.66786 -25.56920 -24.58284 -23.40414 -23.21216 -21.61107 -21.05696 -20.36639 -19.41620 -18.23227 -17.65741 -17.06927 -16.50532 -16.21721 -15.79606 -15.50781 -14.94050 -14.80266 -14.74757 -14.39915 -13.90834 -13.67683 -13.58830 -13.55879 -13.27664 -13.08010 -12.91702 -12.62241 -12.52999 -12.47839 -12.27070 -11.97201 -11.68068 -11.66929 -11.50304 -11.43704 -11.26537 -11.10282 -11.08622 -10.91577 -10.75266 -10.51128 -10.43866 -10.18486 -10.06498 -9.89750 -9.64538 -8.90393 -8.79738 -6.93000 -5.73827 -3.04641 1.05939 1.63591 2.18368 2.20415 2.70188 3.44704 3.48731 3.51002 3.62581 3.85094 3.86399 4.12467 4.30671 4.43832 4.58821 4.60728 4.65497 4.73232 4.79550 4.88010 5.03068 5.11013 5.17699 5.25504 5.28847 5.38229 5.46023 5.50400 5.55604 5.57218 5.60018 5.62978 5.67761 5.76258 5.82764 5.93351 5.94571 5.98419 6.00500 6.09345 6.24543 6.36984 6.42655 6.67973 6.77801 7.09256 7.69580 7.80509 8.43304 8.54059 9.54259 10.11072 10.44806 11.48136 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.003030 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.972990 B = 9239.222531 C =10570.480292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.201 3.799 5 N -0.300 5.300 6 N -0.072 5.072 7 N -0.083 5.083 8 N -0.295 5.295 9 C 0.094 3.906 10 C 0.496 3.504 11 O -0.506 6.506 12 N -0.602 5.602 13 C 0.101 3.899 14 C -0.135 4.135 15 C -0.113 4.113 16 C -0.108 4.108 17 H 0.075 0.925 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.246 4.246 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.121 3.879 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.020 0.980 45 H 0.022 0.978 46 H 0.385 0.615 47 H 0.257 0.743 48 H 0.071 0.929 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.620 19.006 -9.181 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.201 4.201 4 C -0.077 4.077 5 N -0.148 5.148 6 N -0.066 5.066 7 N -0.069 5.069 8 N -0.096 5.096 9 C -0.032 4.032 10 C 0.280 3.720 11 O -0.379 6.379 12 N -0.337 5.337 13 C -0.021 4.021 14 C -0.173 4.173 15 C -0.151 4.151 16 C -0.127 4.127 17 H 0.093 0.907 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.377 4.377 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.000 4.000 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.040 0.960 46 H 0.219 0.781 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.061 18.635 -7.452 25.704 hybrid contribution -0.615 -0.870 -0.914 1.404 sum 15.445 17.764 -8.365 24.982 Atomic orbital electron populations 1.21843 0.91566 1.03600 1.03381 1.19787 0.98044 0.95889 0.89457 1.21852 1.01061 0.93469 1.03736 1.26072 0.94714 0.88881 0.98016 1.74935 1.19565 1.22013 0.98307 1.78609 1.06729 0.98913 1.22349 1.78904 1.20299 1.20521 0.87143 1.47884 1.34807 1.20007 1.06857 1.22054 0.99319 0.95652 0.86221 1.20218 0.87500 0.83113 0.81186 1.90903 1.25928 1.69729 1.51382 1.48135 1.21637 1.33722 1.30168 1.21868 0.85006 0.98404 0.96862 1.21925 0.98364 0.94625 1.02403 1.21530 0.95731 0.98860 0.98993 1.21712 0.95602 0.95123 1.00313 0.90673 1.20625 0.88898 0.93986 0.93208 1.42407 1.25661 1.46606 1.23153 1.19139 1.01559 1.13147 1.03854 0.91259 1.24772 0.99129 0.99965 0.96916 1.69660 1.33638 1.43096 1.11269 0.86278 0.81639 0.81235 0.77058 1.21285 1.21660 1.21257 1.21844 0.91742 0.84626 1.01786 0.90996 0.90890 0.91617 0.89300 0.92469 0.90785 0.90889 0.84142 0.84608 0.90421 0.90450 0.91269 0.90488 0.91248 0.91580 0.96230 0.95980 0.78132 0.93349 0.91051 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -0.86 9.18 37.16 0.34 -0.52 16 4 C 0.20 2.48 6.64 -155.43 -1.03 1.45 16 5 N -0.30 -4.60 12.36 32.70 0.40 -4.19 16 6 N -0.07 -1.24 13.43 60.35 0.81 -0.43 16 7 N -0.08 -1.32 13.29 60.35 0.80 -0.52 16 8 N -0.29 -3.69 2.83 -59.44 -0.17 -3.86 16 9 C 0.09 0.77 4.92 -5.20 -0.03 0.75 16 10 C 0.50 6.32 7.77 -10.99 -0.09 6.23 16 11 O -0.51 -9.52 15.84 5.55 0.09 -9.43 16 12 N -0.60 -6.65 2.97 -172.75 -0.51 -7.17 16 13 C 0.10 0.63 6.34 -3.71 -0.02 0.61 16 14 C -0.13 -0.96 6.08 -26.61 -0.16 -1.12 16 15 C -0.11 -1.14 5.17 -26.69 -0.14 -1.28 16 16 C -0.11 -1.59 2.38 -90.49 -0.22 -1.80 16 17 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 18 C 0.16 3.07 5.65 -4.04 -0.02 3.05 16 19 N -0.73 -18.56 5.38 -59.91 -0.32 -18.88 16 20 C -0.25 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 24 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.12 1.80 5.52 -3.69 -0.02 1.78 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.52 6.84 -51.93 -0.36 0.17 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.14 0.80 7.69 -51.93 -0.40 0.40 16 37 H 0.14 0.48 6.92 -51.93 -0.36 0.12 16 38 H 0.08 0.23 5.93 -51.93 -0.31 -0.08 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.49 6.89 -40.82 -0.28 10.21 16 47 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.10 2.07 6.21 -51.93 -0.32 1.75 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -38.36 396.36 -6.73 -45.09 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.91 Total: 3.72 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.59 Total: 0.25 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 1.74 Total: -63.32 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.36 -6.73 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491175037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.975 kcal (2) G-P(sol) polarization free energy of solvation -38.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds