Wall clock time and date at job start Tue Mar 31 2020 19:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46913 * 2 1 4 4 C 1.50696 * 109.47349 * 119.99579 * 2 1 3 5 5 N 1.31068 * 126.66365 * 300.17944 * 4 2 1 6 6 N 1.28840 * 107.99636 * 180.23941 * 5 4 2 7 7 N 1.28739 * 109.39379 * 359.74854 * 6 5 4 8 8 N 1.29020 * 108.81047 * 0.02562 * 7 6 5 9 9 C 1.46497 * 126.44044 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47387 * 90.02654 * 9 8 7 11 11 O 1.21286 * 119.99431 * 0.02562 * 10 9 8 12 12 N 1.34766 * 120.00319 * 180.02562 * 10 9 8 13 13 C 1.46924 * 120.63242 * 0.02562 * 12 10 9 14 14 C 1.53191 * 108.77817 * 126.37005 * 13 12 10 15 15 C 1.53042 * 109.31021 * 54.63576 * 14 13 12 16 16 C 1.53035 * 109.54021 * 298.63480 * 15 14 13 17 17 H 1.09001 * 109.49969 * 301.41757 * 16 15 14 18 18 C 1.52998 * 109.50087 * 181.31694 * 16 15 14 19 19 N 1.46496 * 109.47511 * 175.16680 * 18 16 15 20 20 C 1.36940 * 120.00122 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99835 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99996 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00132 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00201 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47448 * 59.99406 * 24 22 20 26 26 H 1.48495 * 109.47411 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47315 * 299.99835 * 24 22 20 28 28 C 1.46929 * 120.63348 * 180.02562 * 12 10 9 29 29 H 1.08994 * 109.47335 * 300.00288 * 1 2 3 30 30 H 1.08999 * 109.46815 * 60.00616 * 1 2 3 31 31 H 1.08998 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47318 * 240.00058 * 2 1 3 33 33 H 1.08998 * 109.46928 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47149 * 299.99713 * 3 2 1 35 35 H 1.09001 * 109.47081 * 59.99913 * 3 2 1 36 36 H 1.09003 * 109.47396 * 330.02119 * 9 8 7 37 37 H 1.09005 * 109.47511 * 210.02359 * 9 8 7 38 38 H 1.08999 * 109.58511 * 6.58326 * 13 12 10 39 39 H 1.08999 * 109.58969 * 246.15926 * 13 12 10 40 40 H 1.09006 * 109.49784 * 294.68835 * 14 13 12 41 41 H 1.08997 * 109.52766 * 174.60233 * 14 13 12 42 42 H 1.09004 * 109.46156 * 178.61474 * 15 14 13 43 43 H 1.09003 * 109.44815 * 58.65469 * 15 14 13 44 44 H 1.09008 * 109.47175 * 295.16379 * 18 16 15 45 45 H 1.08999 * 109.47184 * 55.16252 * 18 16 15 46 46 H 0.97003 * 119.99766 * 359.97438 * 19 18 16 47 47 H 0.96994 * 120.00373 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.59209 * 113.83860 * 28 12 10 49 49 H 1.09003 * 109.58217 * 353.41142 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7950 -0.3801 2.4765 6 7 2.4015 -1.2267 3.2351 7 7 3.0154 -2.0915 2.5052 8 7 2.8097 -1.8087 1.2633 9 6 3.3291 -2.5420 0.1063 10 6 2.3502 -3.6181 -0.2871 11 8 1.3199 -3.7584 0.3372 12 7 2.6197 -4.4246 -1.3327 13 6 3.8638 -4.2674 -2.0983 14 6 4.5859 -5.6175 -2.1485 15 6 3.6351 -6.6796 -2.7055 16 6 2.4217 -6.8148 -1.7828 17 1 2.7549 -7.0864 -0.7811 18 6 1.4878 -7.8998 -2.3227 19 7 0.3863 -8.1095 -1.3800 20 6 -0.5808 -9.0399 -1.6530 21 1 -0.5316 -9.6187 -2.5634 22 6 -1.6249 -9.2382 -0.7599 23 7 -1.6851 -8.5324 0.3494 24 14 -2.9444 -10.5067 -1.1325 25 1 -2.3200 -11.8483 -1.2582 26 1 -3.9386 -10.5254 -0.0297 27 1 -3.6233 -10.1556 -2.4057 28 6 1.6749 -5.4779 -1.7287 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 4.2854 -2.9972 0.3640 37 1 3.4673 -1.8540 -0.7278 38 1 4.5017 -3.5298 -1.6114 39 1 3.6305 -3.9399 -3.1114 40 1 4.8986 -5.9005 -1.1434 41 1 5.4611 -5.5388 -2.7933 42 1 4.1541 -7.6362 -2.7654 43 1 3.3033 -6.3836 -3.7007 44 1 1.0864 -7.5869 -3.2867 45 1 2.0434 -8.8295 -2.4450 46 1 0.3423 -7.5898 -0.5621 47 1 -2.4144 -8.6712 0.9736 48 1 1.2633 -5.2490 -2.7117 49 1 0.8686 -5.5391 -0.9978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491175037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:02 Heat of formation + Delta-G solvation = 57.879730 kcal Electronic energy + Delta-G solvation = -30030.470124 eV Core-core repulsion = 26029.226178 eV Total energy + Delta-G solvation = -4001.243946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.31990 -41.47224 -39.06809 -37.18457 -36.68627 -36.47702 -34.58402 -33.12873 -32.59563 -31.66147 -30.24382 -28.12898 -27.23845 -26.50868 -25.50819 -24.92120 -24.33029 -22.72434 -21.97753 -21.45299 -20.34174 -19.26438 -19.02365 -18.50663 -17.55367 -17.06475 -16.79790 -16.69108 -16.42014 -15.83753 -15.56705 -15.41366 -15.37000 -15.05405 -14.64565 -14.22995 -14.21016 -14.17979 -14.09768 -13.78174 -13.69103 -13.24195 -13.11343 -13.05608 -12.88115 -12.73771 -12.66463 -12.49973 -12.32560 -12.29921 -12.24033 -12.07645 -11.95350 -11.91761 -11.86377 -11.59535 -11.33467 -11.18769 -10.98478 -10.89299 -9.77082 -9.05137 -7.98294 -5.29097 0.05943 0.82344 1.11363 1.27162 1.42272 1.46483 1.53051 1.81701 2.52447 2.85554 3.10108 3.11839 3.34909 3.54640 3.69234 3.77165 3.87443 3.90160 3.99673 4.03485 4.11034 4.15433 4.17288 4.30277 4.35294 4.44326 4.61205 4.63663 4.74985 4.75192 4.79338 4.80337 4.88049 4.90701 4.91241 4.93915 5.02542 5.09724 5.16614 5.24909 5.25563 5.35420 5.36375 5.42552 5.44618 5.52517 6.20940 6.21936 6.88971 7.27347 7.45878 8.04756 8.25518 9.24763 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.003030 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.972990 B = 9239.222531 C =10570.480292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.137 4.137 4 C 0.208 3.792 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.106 5.106 8 N -0.293 5.293 9 C 0.092 3.908 10 C 0.490 3.510 11 O -0.583 6.583 12 N -0.593 5.593 13 C 0.091 3.909 14 C -0.131 4.131 15 C -0.108 4.108 16 C -0.096 4.096 17 H 0.046 0.954 18 C 0.156 3.844 19 N -0.750 5.750 20 C -0.246 4.246 21 H 0.081 0.919 22 C -0.081 4.081 23 N -0.974 5.974 24 Si 0.977 3.023 25 H -0.274 1.274 26 H -0.299 1.299 27 H -0.273 1.273 28 C 0.129 3.871 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.029 0.971 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.175 0.825 37 H 0.198 0.802 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.081 0.919 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.662 20.391 -13.283 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 C -0.195 4.195 4 C -0.070 4.070 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.092 5.092 8 N -0.094 5.094 9 C -0.031 4.031 10 C 0.276 3.724 11 O -0.462 6.462 12 N -0.326 5.326 13 C -0.029 4.029 14 C -0.169 4.169 15 C -0.146 4.146 16 C -0.115 4.115 17 H 0.064 0.936 18 C 0.030 3.970 19 N -0.392 5.392 20 C -0.378 4.378 21 H 0.099 0.901 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.805 3.195 25 H -0.200 1.200 26 H -0.226 1.226 27 H -0.199 1.199 28 C 0.006 3.994 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.049 0.951 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.193 0.807 37 H 0.215 0.785 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.200 0.800 47 H 0.058 0.942 48 H 0.100 0.900 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.196 20.007 -11.646 30.073 hybrid contribution -1.522 -1.346 0.227 2.044 sum 17.675 18.661 -11.419 28.125 Atomic orbital electron populations 1.21837 0.92731 1.01464 1.04242 1.20142 0.96974 0.97379 0.88645 1.21848 1.01866 0.91569 1.04210 1.26860 0.93300 0.88473 0.98371 1.74832 1.20437 1.22738 0.99878 1.78553 1.08027 0.99926 1.23704 1.78777 1.20963 1.20686 0.88760 1.48153 1.34460 1.19987 1.06760 1.22618 0.98365 0.95481 0.86652 1.21039 0.87224 0.83712 0.80417 1.90892 1.29450 1.71978 1.53912 1.48184 1.22491 1.31853 1.30033 1.22409 0.82969 0.99233 0.98250 1.21948 0.98783 0.93707 1.02447 1.21529 0.93913 1.00577 0.98533 1.21566 0.96660 0.93452 0.99866 0.93558 1.20878 0.88009 0.95702 0.92445 1.42698 1.26953 1.45890 1.23691 1.19649 1.01701 1.12778 1.03664 0.90110 1.25686 1.01959 1.02610 0.97026 1.69869 1.34402 1.45507 1.12671 0.85157 0.78531 0.78954 0.76810 1.20031 1.22572 1.19902 1.21418 0.91378 0.86308 1.00281 0.92518 0.87697 0.95139 0.85819 0.91121 0.87968 0.92769 0.80738 0.78465 0.85795 0.87593 0.92404 0.86529 0.91122 0.89846 0.95203 0.95756 0.79984 0.94239 0.90047 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.18 71.98 0.66 -1.90 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -1.21 9.18 71.98 0.66 -0.55 16 4 C 0.21 4.98 6.64 138.13 0.92 5.90 16 5 N -0.33 -10.49 12.36 -50.45 -0.62 -11.12 16 6 N -0.11 -3.89 13.43 37.01 0.50 -3.39 16 7 N -0.11 -3.42 13.29 37.02 0.49 -2.93 16 8 N -0.29 -7.00 2.83 -341.98 -0.97 -7.97 16 9 C 0.09 1.18 4.92 85.63 0.42 1.61 16 10 C 0.49 11.99 7.77 87.66 0.68 12.67 16 11 O -0.58 -23.34 15.84 -3.05 -0.05 -23.39 16 12 N -0.59 -11.91 2.97 -818.85 -2.43 -14.35 16 13 C 0.09 0.63 6.34 86.36 0.55 1.18 16 14 C -0.13 -1.23 6.08 30.67 0.19 -1.04 16 15 C -0.11 -1.84 5.17 30.62 0.16 -1.68 16 16 C -0.10 -2.82 2.38 -10.71 -0.03 -2.84 16 17 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 18 C 0.16 6.02 5.65 86.38 0.49 6.51 16 19 N -0.75 -39.58 5.38 -343.45 -1.85 -41.42 16 20 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 21 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 22 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 23 N -0.97 -63.89 13.06 21.65 0.28 -63.61 16 24 Si 0.98 47.85 29.55 68.60 2.03 49.88 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 27 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 28 C 0.13 3.89 5.52 86.37 0.48 4.37 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.12 0.86 6.84 -2.39 -0.02 0.85 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.18 1.10 7.69 -2.39 -0.02 1.09 16 37 H 0.20 0.02 6.92 -2.38 -0.02 0.01 16 38 H 0.12 -0.22 5.93 -2.39 -0.01 -0.23 16 39 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.37 21.60 6.89 -92.71 -0.64 20.96 16 47 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 48 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.04 1.91 6.21 -2.39 -0.01 1.89 16 Total: -1.00 -96.39 396.36 4.14 -92.25 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.32 Total: 19.75 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.44 Total: 6.29 kcal Atomic # 7 Polarization: -140.18 SS G_CDS: -4.60 Total: -144.78 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -96.39 4.14 -92.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491175037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.130 kcal (2) G-P(sol) polarization free energy of solvation -96.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds