Wall clock time and date at job start Tue Mar 31 2020 19:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.31071 * 126.65818 * 60.02506 * 4 2 1 6 6 N 1.28843 * 107.99074 * 179.97438 * 5 4 2 7 7 N 1.28740 * 109.39356 * 0.02562 * 6 5 4 8 8 N 1.29014 * 108.81006 * 359.74579 * 7 6 5 9 9 C 1.46503 * 126.43922 * 180.25347 * 8 7 6 10 10 C 1.50706 * 109.46777 * 270.17770 * 9 8 7 11 11 O 1.21276 * 120.00000 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99938 * 179.97438 * 10 9 8 13 13 C 1.46922 * 120.62904 * 359.97438 * 12 10 9 14 14 C 1.53198 * 108.77429 * 233.58197 * 13 12 10 15 15 C 1.53046 * 109.31227 * 305.36726 * 14 13 12 16 16 C 1.53043 * 109.53541 * 61.36581 * 15 14 13 17 17 H 1.08992 * 109.49965 * 58.58331 * 16 15 14 18 18 C 1.53001 * 109.49278 * 178.65100 * 16 15 14 19 19 N 1.46500 * 109.46742 * 185.00166 * 18 16 15 20 20 C 1.36936 * 119.99821 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00166 * 359.97438 * 20 19 18 22 22 C 1.38817 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99916 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00045 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47527 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47544 * 119.99632 * 24 22 20 27 27 H 1.48498 * 109.47360 * 239.99736 * 24 22 20 28 28 C 1.46925 * 120.62943 * 179.71406 * 12 10 9 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.08998 * 109.47231 * 30.17214 * 9 8 7 37 37 H 1.08995 * 109.47470 * 150.18040 * 9 8 7 38 38 H 1.08995 * 109.59222 * 353.37434 * 13 12 10 39 39 H 1.09009 * 109.58875 * 113.65679 * 13 12 10 40 40 H 1.08998 * 109.49130 * 65.31813 * 14 13 12 41 41 H 1.09001 * 109.49507 * 185.41775 * 14 13 12 42 42 H 1.08996 * 109.45249 * 181.38257 * 15 14 13 43 43 H 1.08999 * 109.45965 * 301.35554 * 15 14 13 44 44 H 1.09004 * 109.47042 * 304.99600 * 18 16 15 45 45 H 1.08997 * 109.47643 * 64.99988 * 18 16 15 46 46 H 0.96998 * 120.00060 * 359.97438 * 19 18 16 47 47 H 0.96999 * 119.99789 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.59239 * 246.20655 * 28 12 10 49 49 H 1.09001 * 109.58723 * 6.63309 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7979 -0.3780 -2.4765 6 7 2.3994 -1.2281 -3.2351 7 7 3.0111 -2.0944 -2.5053 8 7 2.8129 -1.8063 -1.2634 9 6 3.3368 -2.5365 -0.1064 10 6 2.3595 -3.6119 0.2934 11 8 1.3270 -3.7539 -0.3268 12 7 2.6329 -4.4157 1.3401 13 6 3.8798 -4.2562 2.1006 14 6 4.6017 -5.6064 2.1527 15 6 3.6527 -6.6664 2.7165 16 6 2.4360 -6.8043 1.7985 17 1 2.7655 -7.0792 0.7966 18 6 1.5042 -7.8878 2.3450 19 7 0.4014 -8.1031 1.4049 20 6 -0.5647 -9.0325 1.6840 21 1 -0.5135 -9.6072 2.5971 22 6 -1.6099 -9.2362 0.7935 23 7 -1.6726 -8.5355 -0.3189 24 14 -2.9274 -10.5045 1.1740 25 1 -2.6291 -11.1528 2.4763 26 1 -4.2519 -9.8366 1.2450 27 1 -2.9485 -11.5330 0.1030 28 6 1.6872 -5.4644 1.7457 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 4.2921 -2.9924 -0.3665 37 1 3.4779 -1.8464 0.7253 38 1 4.5161 -3.5203 1.6092 39 1 3.6504 -3.9229 3.1129 40 1 4.9108 -5.8925 1.1474 41 1 5.4791 -5.5253 2.7944 42 1 4.1718 -7.6228 2.7775 43 1 3.3243 -6.3672 3.7119 44 1 2.0611 -8.8164 2.4705 45 1 1.1040 -7.5711 3.3081 46 1 0.3552 -7.5868 0.5850 47 1 -2.4032 -8.6776 -0.9410 48 1 1.2820 -5.2303 2.7301 49 1 0.8764 -5.5259 1.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491175038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:08 Heat of formation + Delta-G solvation = 86.735363 kcal Electronic energy + Delta-G solvation = -30028.871953 eV Core-core repulsion = 26028.879282 eV Total energy + Delta-G solvation = -3999.992672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.29342 -40.49613 -37.98098 -36.42693 -35.52387 -35.08476 -33.13773 -31.87055 -31.60382 -30.18001 -29.18660 -27.54471 -25.67041 -25.56657 -24.58296 -23.40409 -23.21395 -21.61301 -21.05577 -20.36652 -19.42321 -18.22929 -17.65999 -17.07091 -16.50670 -16.21665 -15.79423 -15.50859 -14.94166 -14.80408 -14.74863 -14.39791 -13.90779 -13.66708 -13.58716 -13.56649 -13.27716 -13.08491 -12.91670 -12.62224 -12.53065 -12.48405 -12.27172 -11.97071 -11.68067 -11.66957 -11.50375 -11.43923 -11.26761 -11.10921 -11.08712 -10.92391 -10.77395 -10.49586 -10.44518 -10.17937 -10.02489 -9.89322 -9.65566 -8.91388 -8.79904 -6.93082 -5.74429 -3.05055 1.05933 1.63677 2.18361 2.20291 2.70025 3.44085 3.48763 3.52001 3.62534 3.84931 3.86425 4.12477 4.30670 4.43658 4.58526 4.60742 4.65554 4.73199 4.79560 4.87956 5.02607 5.10759 5.17560 5.25453 5.28832 5.38196 5.45596 5.50346 5.55624 5.57124 5.59950 5.62846 5.67720 5.76110 5.82788 5.93286 5.94501 5.98437 6.00417 6.09164 6.24366 6.36746 6.42157 6.67734 6.77772 7.09081 7.70313 7.80369 8.42709 8.54017 9.53904 10.10758 10.44474 11.47682 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.003030 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.382303 B = 9239.314764 C =10569.797256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.201 3.799 5 N -0.300 5.300 6 N -0.072 5.072 7 N -0.083 5.083 8 N -0.295 5.295 9 C 0.094 3.906 10 C 0.496 3.504 11 O -0.506 6.506 12 N -0.602 5.602 13 C 0.102 3.898 14 C -0.135 4.135 15 C -0.113 4.113 16 C -0.108 4.108 17 H 0.075 0.925 18 C 0.161 3.839 19 N -0.734 5.734 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.121 3.879 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.071 0.929 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.660 19.040 9.142 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.201 4.201 4 C -0.077 4.077 5 N -0.148 5.148 6 N -0.066 5.066 7 N -0.069 5.069 8 N -0.096 5.096 9 C -0.032 4.032 10 C 0.280 3.720 11 O -0.379 6.379 12 N -0.337 5.337 13 C -0.021 4.021 14 C -0.173 4.173 15 C -0.151 4.151 16 C -0.127 4.127 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.375 4.375 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.000 4.000 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.112 18.663 7.430 25.751 hybrid contribution -0.625 -0.856 0.896 1.388 sum 15.487 17.807 8.326 25.025 Atomic orbital electron populations 1.21843 0.91562 1.03600 1.03380 1.19787 0.98047 0.95883 0.89456 1.21851 1.01058 0.93476 1.03737 1.26070 0.94608 0.88975 0.98017 1.74939 1.19645 1.21946 0.98304 1.78610 1.06922 0.98721 1.22354 1.78903 1.20346 1.20461 0.87148 1.47887 1.34688 1.20124 1.06857 1.22057 0.99258 0.95719 0.86212 1.20225 0.87510 0.83092 0.81202 1.90901 1.25778 1.69608 1.51646 1.48139 1.21405 1.34007 1.30130 1.21868 0.84938 0.98393 0.96938 1.21924 0.98363 0.94618 1.02385 1.21531 0.95722 0.98872 0.98991 1.21776 0.95544 0.95078 1.00326 0.90650 1.20628 0.88909 0.93992 0.93210 1.42422 1.25644 1.46778 1.23005 1.19229 1.01463 1.13139 1.03696 0.91153 1.24777 0.99159 1.00017 0.96911 1.69684 1.33437 1.43250 1.11254 0.86137 0.81908 0.80921 0.77308 1.20573 1.21834 1.21857 1.21919 0.91750 0.84686 1.01640 0.90994 0.91612 0.90895 0.89304 0.90794 0.92473 0.90881 0.84138 0.84606 0.90439 0.90465 0.91258 0.90494 0.91250 0.91583 0.95973 0.96227 0.78137 0.93459 0.91040 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -0.86 9.18 37.16 0.34 -0.52 16 4 C 0.20 2.48 6.64 -155.43 -1.03 1.45 16 5 N -0.30 -4.60 12.36 32.70 0.40 -4.19 16 6 N -0.07 -1.24 13.43 60.35 0.81 -0.43 16 7 N -0.08 -1.32 13.29 60.35 0.80 -0.52 16 8 N -0.29 -3.69 2.83 -59.44 -0.17 -3.86 16 9 C 0.09 0.77 4.91 -5.19 -0.03 0.75 16 10 C 0.50 6.30 7.77 -10.98 -0.09 6.22 16 11 O -0.51 -9.51 15.84 5.56 0.09 -9.42 16 12 N -0.60 -6.64 2.97 -172.52 -0.51 -7.15 16 13 C 0.10 0.63 6.34 -3.71 -0.02 0.61 16 14 C -0.13 -0.96 6.08 -26.61 -0.16 -1.12 16 15 C -0.11 -1.14 5.17 -26.69 -0.14 -1.28 16 16 C -0.11 -1.58 2.38 -90.29 -0.22 -1.80 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 18 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 19 N -0.73 -18.54 5.38 -59.91 -0.32 -18.86 16 20 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 24 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C 0.12 1.79 5.54 -3.51 -0.02 1.77 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.52 6.85 -51.93 -0.36 0.17 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.14 0.79 7.69 -51.93 -0.40 0.40 16 37 H 0.14 0.48 6.93 -51.93 -0.36 0.12 16 38 H 0.08 0.23 5.93 -51.93 -0.31 -0.08 16 39 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.49 6.91 -40.82 -0.28 10.20 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.10 2.07 6.23 -51.93 -0.32 1.75 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -38.39 396.44 -6.73 -45.11 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.92 Total: 3.61 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.59 Total: 0.27 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 1.74 Total: -63.27 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.39 -6.73 -45.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491175038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.850 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds