Wall clock time and date at job start Tue Mar 31 2020 19:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.31071 * 126.65818 * 60.02506 * 4 2 1 6 6 N 1.28843 * 107.99074 * 179.97438 * 5 4 2 7 7 N 1.28740 * 109.39356 * 0.02562 * 6 5 4 8 8 N 1.29014 * 108.81006 * 359.74579 * 7 6 5 9 9 C 1.46503 * 126.43922 * 180.25347 * 8 7 6 10 10 C 1.50706 * 109.46777 * 270.17770 * 9 8 7 11 11 O 1.21276 * 120.00000 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99938 * 179.97438 * 10 9 8 13 13 C 1.46922 * 120.62904 * 359.97438 * 12 10 9 14 14 C 1.53198 * 108.77429 * 233.58197 * 13 12 10 15 15 C 1.53046 * 109.31227 * 305.36726 * 14 13 12 16 16 C 1.53043 * 109.53541 * 61.36581 * 15 14 13 17 17 H 1.08992 * 109.49965 * 58.58331 * 16 15 14 18 18 C 1.53001 * 109.49278 * 178.65100 * 16 15 14 19 19 N 1.46500 * 109.46742 * 185.00166 * 18 16 15 20 20 C 1.36936 * 119.99821 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00166 * 359.97438 * 20 19 18 22 22 C 1.38817 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99916 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00045 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47527 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47544 * 119.99632 * 24 22 20 27 27 H 1.48498 * 109.47360 * 239.99736 * 24 22 20 28 28 C 1.46925 * 120.62943 * 179.71406 * 12 10 9 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.08998 * 109.47231 * 30.17214 * 9 8 7 37 37 H 1.08995 * 109.47470 * 150.18040 * 9 8 7 38 38 H 1.08995 * 109.59222 * 353.37434 * 13 12 10 39 39 H 1.09009 * 109.58875 * 113.65679 * 13 12 10 40 40 H 1.08998 * 109.49130 * 65.31813 * 14 13 12 41 41 H 1.09001 * 109.49507 * 185.41775 * 14 13 12 42 42 H 1.08996 * 109.45249 * 181.38257 * 15 14 13 43 43 H 1.08999 * 109.45965 * 301.35554 * 15 14 13 44 44 H 1.09004 * 109.47042 * 304.99600 * 18 16 15 45 45 H 1.08997 * 109.47643 * 64.99988 * 18 16 15 46 46 H 0.96998 * 120.00060 * 359.97438 * 19 18 16 47 47 H 0.96999 * 119.99789 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.59239 * 246.20655 * 28 12 10 49 49 H 1.09001 * 109.58723 * 6.63309 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7979 -0.3780 -2.4765 6 7 2.3994 -1.2281 -3.2351 7 7 3.0111 -2.0944 -2.5053 8 7 2.8129 -1.8063 -1.2634 9 6 3.3368 -2.5365 -0.1064 10 6 2.3595 -3.6119 0.2934 11 8 1.3270 -3.7539 -0.3268 12 7 2.6329 -4.4157 1.3401 13 6 3.8798 -4.2562 2.1006 14 6 4.6017 -5.6064 2.1527 15 6 3.6527 -6.6664 2.7165 16 6 2.4360 -6.8043 1.7985 17 1 2.7655 -7.0792 0.7966 18 6 1.5042 -7.8878 2.3450 19 7 0.4014 -8.1031 1.4049 20 6 -0.5647 -9.0325 1.6840 21 1 -0.5135 -9.6072 2.5971 22 6 -1.6099 -9.2362 0.7935 23 7 -1.6726 -8.5355 -0.3189 24 14 -2.9274 -10.5045 1.1740 25 1 -2.6291 -11.1528 2.4763 26 1 -4.2519 -9.8366 1.2450 27 1 -2.9485 -11.5330 0.1030 28 6 1.6872 -5.4644 1.7457 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 4.2921 -2.9924 -0.3665 37 1 3.4779 -1.8464 0.7253 38 1 4.5161 -3.5203 1.6092 39 1 3.6504 -3.9229 3.1129 40 1 4.9108 -5.8925 1.1474 41 1 5.4791 -5.5253 2.7944 42 1 4.1718 -7.6228 2.7775 43 1 3.3243 -6.3672 3.7119 44 1 2.0611 -8.8164 2.4705 45 1 1.1040 -7.5711 3.3081 46 1 0.3552 -7.5868 0.5850 47 1 -2.4032 -8.6776 -0.9410 48 1 1.2820 -5.2303 2.7301 49 1 0.8764 -5.5259 1.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491175038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:07 Heat of formation + Delta-G solvation = 57.712625 kcal Electronic energy + Delta-G solvation = -30030.130474 eV Core-core repulsion = 26028.879282 eV Total energy + Delta-G solvation = -4001.251192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.32102 -41.46649 -39.05721 -37.18464 -36.68720 -36.47721 -34.58078 -33.12614 -32.59596 -31.65468 -30.24326 -28.12976 -27.24039 -26.50374 -25.50829 -24.92388 -24.32791 -22.72509 -21.97415 -21.45329 -20.34655 -19.26405 -19.02122 -18.50929 -17.55263 -17.06382 -16.79551 -16.69131 -16.41971 -15.83530 -15.56672 -15.41568 -15.37016 -15.05157 -14.64613 -14.23122 -14.20834 -14.17943 -14.09683 -13.78227 -13.69109 -13.24302 -13.11389 -13.06085 -12.92178 -12.75333 -12.67598 -12.50220 -12.32654 -12.29888 -12.15913 -12.04837 -11.95929 -11.91870 -11.86197 -11.59323 -11.33498 -11.18719 -11.01319 -10.89339 -9.76790 -9.05231 -7.98791 -5.29379 0.05947 0.82533 1.11307 1.27271 1.42391 1.44323 1.54534 1.81739 2.52054 2.85494 3.10235 3.11732 3.34893 3.54686 3.69273 3.77205 3.87212 3.90321 3.99641 4.03449 4.11235 4.15350 4.17274 4.30226 4.35237 4.44280 4.61134 4.63680 4.75032 4.75197 4.79437 4.80324 4.88116 4.90634 4.91446 4.93861 5.02593 5.09689 5.16632 5.25047 5.25434 5.35339 5.36354 5.42712 5.45034 5.52744 6.20944 6.21902 6.89039 7.27198 7.45853 8.04524 8.25204 9.24716 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.003030 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.382303 B = 9239.314764 C =10569.797256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.137 4.137 4 C 0.208 3.792 5 N -0.330 5.330 6 N -0.108 5.108 7 N -0.106 5.106 8 N -0.292 5.292 9 C 0.092 3.908 10 C 0.490 3.510 11 O -0.583 6.583 12 N -0.594 5.594 13 C 0.091 3.909 14 C -0.131 4.131 15 C -0.108 4.108 16 C -0.096 4.096 17 H 0.046 0.954 18 C 0.156 3.844 19 N -0.750 5.750 20 C -0.243 4.243 21 H 0.081 0.919 22 C -0.082 4.082 23 N -0.974 5.974 24 Si 0.976 3.024 25 H -0.259 1.259 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.129 3.871 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.175 0.825 37 H 0.198 0.802 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.025 0.975 45 H 0.030 0.970 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.082 0.918 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.736 20.439 13.254 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 C -0.195 4.195 4 C -0.070 4.070 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.092 5.092 8 N -0.093 5.093 9 C -0.031 4.031 10 C 0.276 3.724 11 O -0.462 6.462 12 N -0.326 5.326 13 C -0.029 4.029 14 C -0.169 4.169 15 C -0.146 4.146 16 C -0.115 4.115 17 H 0.065 0.935 18 C 0.029 3.971 19 N -0.392 5.392 20 C -0.375 4.375 21 H 0.099 0.901 22 C -0.274 4.274 23 N -0.625 5.625 24 Si 0.805 3.195 25 H -0.183 1.183 26 H -0.222 1.222 27 H -0.222 1.222 28 C 0.006 3.994 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.193 0.807 37 H 0.215 0.785 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.200 0.800 47 H 0.057 0.943 48 H 0.100 0.900 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.282 20.049 11.633 30.151 hybrid contribution -1.541 -1.334 -0.249 2.054 sum 17.740 18.715 11.385 28.188 Atomic orbital electron populations 1.21837 0.92727 1.01465 1.04244 1.20140 0.96977 0.97375 0.88639 1.21846 1.01869 0.91571 1.04210 1.26857 0.93206 0.88568 0.98375 1.74837 1.20513 1.22661 0.99866 1.78555 1.08221 0.99727 1.23708 1.78775 1.21014 1.20633 0.88772 1.48156 1.34342 1.20093 1.06758 1.22623 0.98304 0.95569 0.86624 1.21043 0.87231 0.83683 0.80447 1.90889 1.29299 1.71862 1.54166 1.48189 1.22268 1.32151 1.29977 1.22407 0.82881 0.99211 0.98364 1.21946 0.98799 0.93712 1.02404 1.21530 0.93880 1.00577 0.98564 1.21631 0.96631 0.93424 0.99844 0.93545 1.20883 0.88004 0.95704 0.92470 1.42715 1.26932 1.46060 1.23533 1.19719 1.01568 1.12712 1.03455 0.90067 1.25683 1.01979 1.02665 0.97050 1.69884 1.34254 1.45666 1.12681 0.85029 0.78581 0.78156 0.77737 1.18292 1.22185 1.22237 1.21495 0.91354 0.86348 1.00198 0.92505 0.95136 0.87707 0.85844 0.87981 0.91117 0.92755 0.80745 0.78470 0.85828 0.87593 0.92403 0.86540 0.91128 0.89840 0.95733 0.95182 0.79987 0.94260 0.89985 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.18 71.98 0.66 -1.91 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.17 16 3 C -0.14 -1.22 9.18 71.98 0.66 -0.56 16 4 C 0.21 4.99 6.64 138.14 0.92 5.90 16 5 N -0.33 -10.48 12.36 -50.45 -0.62 -11.11 16 6 N -0.11 -3.88 13.43 37.01 0.50 -3.39 16 7 N -0.11 -3.42 13.29 37.02 0.49 -2.93 16 8 N -0.29 -7.00 2.83 -341.97 -0.97 -7.96 16 9 C 0.09 1.18 4.91 85.63 0.42 1.60 16 10 C 0.49 11.97 7.77 87.66 0.68 12.65 16 11 O -0.58 -23.30 15.84 -3.02 -0.05 -23.34 16 12 N -0.59 -11.88 2.97 -818.13 -2.43 -14.31 16 13 C 0.09 0.62 6.34 86.37 0.55 1.17 16 14 C -0.13 -1.22 6.08 30.68 0.19 -1.04 16 15 C -0.11 -1.83 5.17 30.62 0.16 -1.67 16 16 C -0.10 -2.81 2.38 -10.58 -0.03 -2.83 16 17 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 18 C 0.16 5.99 5.65 86.38 0.49 6.48 16 19 N -0.75 -39.50 5.38 -343.44 -1.85 -41.35 16 20 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 21 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 23 N -0.97 -63.89 13.06 21.65 0.28 -63.60 16 24 Si 0.98 47.88 29.55 68.60 2.03 49.91 16 25 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 28 C 0.13 3.88 5.54 86.50 0.48 4.36 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 0.87 6.85 -2.39 -0.02 0.85 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.18 1.10 7.69 -2.39 -0.02 1.09 16 37 H 0.20 0.02 6.93 -2.39 -0.02 0.01 16 38 H 0.12 -0.22 5.93 -2.39 -0.01 -0.23 16 39 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.37 21.57 6.91 -92.71 -0.64 20.93 16 47 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 48 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.04 1.90 6.23 -2.39 -0.01 1.89 16 Total: -1.00 -96.40 396.44 4.14 -92.26 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.31 Total: 19.42 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.44 Total: 6.40 kcal Atomic # 7 Polarization: -140.05 SS G_CDS: -4.60 Total: -144.64 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -96.40 4.14 -92.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491175038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.971 kcal (2) G-P(sol) polarization free energy of solvation -96.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds