Wall clock time and date at job start Tue Mar 31 2020 19:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36593 * 126.57774 * 2 1 4 4 C 1.47523 * 125.77379 * 359.97438 * 3 2 1 5 5 O 1.21591 * 120.00198 * 6.07412 * 4 3 2 6 6 N 1.34778 * 119.99753 * 186.07481 * 4 3 2 7 7 C 1.46503 * 120.00065 * 4.95348 * 6 4 3 8 8 C 1.46496 * 119.99752 * 185.22999 * 6 4 3 9 9 C 1.52998 * 109.47147 * 269.72516 * 8 6 4 10 10 N 1.46900 * 109.47205 * 179.97438 * 9 8 6 11 11 C 1.46895 * 111.00190 * 294.29896 * 10 9 8 12 12 C 1.53237 * 109.34253 * 172.74421 * 11 10 9 13 13 N 1.47087 * 108.52002 * 53.83156 * 12 11 10 14 14 C 1.36938 * 120.88211 * 128.83298 * 13 12 11 15 15 H 1.07998 * 120.00505 * 208.23313 * 14 13 12 16 16 C 1.38815 * 119.99647 * 28.23833 * 14 13 12 17 17 N 1.31618 * 120.00250 * 15.45349 * 16 14 13 18 18 Si 1.86801 * 119.99712 * 195.45690 * 16 14 13 19 19 H 1.48502 * 109.47028 * 90.00321 * 18 16 14 20 20 H 1.48503 * 109.47074 * 209.99711 * 18 16 14 21 21 H 1.48493 * 109.47180 * 329.99930 * 18 16 14 22 22 C 1.47073 * 118.23751 * 308.81885 * 13 12 11 23 23 C 1.46906 * 110.99962 * 169.99922 * 10 9 8 24 24 N 1.34408 * 108.45408 * 180.24345 * 3 2 1 25 25 N 1.28756 * 109.52169 * 359.58532 * 24 3 2 26 26 N 1.34816 * 126.57921 * 180.02562 * 2 1 3 27 27 C 1.46496 * 126.59241 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.46928 * 89.99709 * 1 2 3 29 29 H 1.08997 * 109.47024 * 210.00169 * 1 2 3 30 30 H 1.09006 * 109.46944 * 329.99917 * 1 2 3 31 31 H 1.09000 * 109.47029 * 276.18796 * 7 6 4 32 32 H 1.08992 * 109.46965 * 36.19470 * 7 6 4 33 33 H 1.08997 * 109.46733 * 156.19555 * 7 6 4 34 34 H 1.09006 * 109.47529 * 29.72466 * 8 6 4 35 35 H 1.08997 * 109.47456 * 149.72392 * 8 6 4 36 36 H 1.08999 * 109.47097 * 300.00028 * 9 8 6 37 37 H 1.09002 * 109.47586 * 60.00081 * 9 8 6 38 38 H 1.09003 * 109.49461 * 292.70911 * 11 10 9 39 39 H 1.09000 * 109.49102 * 52.79203 * 11 10 9 40 40 H 1.09000 * 109.63056 * 294.12894 * 12 11 10 41 41 H 1.08997 * 109.62941 * 173.54142 * 12 11 10 42 42 H 0.97006 * 120.00248 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.62855 * 291.47001 * 22 13 12 44 44 H 1.09005 * 109.79166 * 170.98822 * 22 13 12 45 45 H 1.09003 * 109.49312 * 307.21283 * 23 10 9 46 46 H 1.08997 * 109.49212 * 67.29600 * 23 10 9 47 47 H 1.09004 * 109.46943 * 90.00628 * 27 26 2 48 48 H 1.09005 * 109.47341 * 209.99963 * 27 26 2 49 49 H 1.09002 * 109.47531 * 330.00370 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6916 2.7647 0.1104 6 7 2.7756 3.4967 -0.1240 7 6 4.1854 3.1807 -0.3664 8 6 2.3469 4.8929 -0.0098 9 6 1.9631 5.4232 -1.3926 10 7 1.5327 6.8231 -1.2780 11 6 0.2925 6.9304 -0.4981 12 6 -0.0234 8.4089 -0.2480 13 7 -0.0398 9.1085 -1.5417 14 6 -1.0994 9.8984 -1.9002 15 1 -1.3441 10.0330 -2.9434 16 6 -1.8590 10.5262 -0.9225 17 7 -1.4007 10.6204 0.3077 18 14 -3.5319 11.2375 -1.3530 19 1 -4.5771 10.2025 -1.1490 20 1 -3.8135 12.4043 -0.4787 21 1 -3.5349 11.6709 -2.7732 22 6 1.1121 8.9374 -2.4400 23 6 1.3833 7.4382 -2.6038 24 7 3.5984 0.6788 -0.0054 25 7 3.6299 -0.6084 0.0000 26 7 2.3105 -1.0826 -0.0005 27 6 1.8863 -2.4848 -0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 4.6783 2.9676 0.5822 32 1 4.2558 2.3087 -1.0164 33 1 4.6711 4.0309 -0.8452 34 1 1.4855 4.9554 0.6553 35 1 3.1628 5.4915 0.3953 36 1 2.8244 5.3608 -2.0577 37 1 1.1471 4.8247 -1.7978 38 1 -0.5266 6.4722 -1.0524 39 1 0.4176 6.4188 0.4562 40 1 0.7431 8.8437 0.3936 41 1 -0.9991 8.4991 0.2295 42 1 -1.9317 11.0588 0.9909 43 1 1.9877 9.4230 -2.0091 44 1 0.8906 9.3778 -3.4122 45 1 2.2995 7.2947 -3.1766 46 1 0.5490 6.9729 -3.1287 47 1 1.7809 -2.8324 -1.0283 48 1 2.6332 -3.0904 0.5129 49 1 0.9294 -2.5751 0.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494093667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:00 Heat of formation + Delta-G solvation = 111.862732 kcal Electronic energy + Delta-G solvation = -29521.388962 eV Core-core repulsion = 25522.485894 eV Total energy + Delta-G solvation = -3998.903067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.59771 -39.69320 -37.99490 -35.97410 -35.20694 -34.19294 -32.67451 -31.50693 -29.84078 -29.61574 -28.19681 -27.89748 -26.79102 -25.78052 -23.77466 -22.89587 -22.46666 -21.70632 -21.02503 -19.65826 -19.00981 -17.72254 -16.87845 -16.75311 -16.27728 -16.15731 -15.41799 -14.94424 -14.59441 -14.52829 -14.27884 -14.10796 -13.90236 -13.71447 -13.46937 -13.44057 -13.34460 -13.28673 -12.99344 -12.93852 -12.80999 -12.59808 -12.30831 -11.97406 -11.74907 -11.35763 -11.21668 -10.99025 -10.84782 -10.69603 -10.55896 -10.36249 -10.19721 -10.06132 -9.97144 -9.67928 -9.53205 -9.44188 -8.68094 -8.43946 -7.74028 -6.57187 -5.71385 -3.14348 0.79031 1.46818 1.66109 2.86172 3.12351 3.42314 3.48676 3.49996 3.87265 3.93064 4.19764 4.35731 4.44704 4.53286 4.59172 4.70758 4.87357 5.07657 5.13217 5.20848 5.29750 5.33331 5.35470 5.46222 5.52123 5.57545 5.64343 5.71447 5.89123 5.92658 6.03439 6.03931 6.07045 6.13884 6.23124 6.33748 6.47479 6.52358 6.63456 6.79221 7.00759 7.25793 7.33634 7.62115 7.68618 7.73462 7.78724 7.89348 8.06158 8.51476 9.28428 9.91401 10.51004 11.37291 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002257 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.565715 B =12405.541283 C =13169.436203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.125 3.875 3 C -0.103 4.103 4 C 0.600 3.400 5 O -0.531 6.531 6 N -0.600 5.600 7 C 0.084 3.916 8 C 0.120 3.880 9 C 0.043 3.957 10 N -0.531 5.531 11 C 0.034 3.966 12 C 0.179 3.821 13 N -0.595 5.595 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.150 3.850 23 C 0.046 3.954 24 N -0.199 5.199 25 N -0.075 5.075 26 N -0.366 5.366 27 C 0.087 3.913 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.026 0.974 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -27.004 -0.329 28.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.013 4.013 3 C -0.242 4.242 4 C 0.386 3.614 5 O -0.407 6.407 6 N -0.332 5.332 7 C -0.059 4.059 8 C -0.002 4.002 9 C -0.087 4.087 10 N -0.256 5.256 11 C -0.095 4.095 12 C 0.053 3.947 13 N -0.319 5.319 14 C -0.381 4.381 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.023 3.977 23 C -0.083 4.083 24 N -0.072 5.072 25 N -0.054 5.054 26 N -0.151 5.151 27 C -0.054 4.054 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.108 0.892 48 H 0.120 0.880 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.778 -26.927 0.111 28.648 hybrid contribution -2.293 -0.171 -0.635 2.386 sum 7.485 -27.099 -0.524 28.118 Atomic orbital electron populations 1.20774 0.84539 1.05676 1.04766 1.21948 0.96298 0.86290 0.96778 1.21198 0.88964 0.95434 1.18590 1.16786 0.85311 0.82473 0.76801 1.90793 1.15896 1.83198 1.50843 1.47636 1.08866 1.06236 1.70471 1.21992 0.80117 1.01822 1.02003 1.21580 1.01838 0.78808 0.98009 1.22362 0.99571 0.90068 0.96674 1.61928 1.33371 1.13523 1.16773 1.22953 0.88749 1.01570 0.96256 1.20853 1.01176 0.85211 0.87435 1.44103 1.17099 1.53612 1.17074 1.19189 1.04650 1.21906 0.92311 0.91777 1.25070 0.99852 0.98353 0.96446 1.70021 1.36521 1.46266 1.01971 0.86281 0.84527 0.78302 0.77590 1.21513 1.21762 1.20508 1.20966 0.90950 0.91255 0.94539 1.22605 0.98635 0.98206 0.88880 1.74769 1.18904 1.03723 1.09834 1.81992 0.96052 1.03819 1.23522 1.50263 1.06493 1.07769 1.50608 1.22173 1.02474 0.76037 1.04736 0.88962 0.90625 0.86600 0.92140 0.90081 0.91064 0.89390 0.89329 0.91543 0.95037 0.95617 0.91881 0.95543 0.89569 0.93660 0.95678 0.92708 0.92170 0.95521 0.89223 0.88048 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.64 36.01 0.35 -0.35 16 2 C 0.12 1.20 7.02 -81.87 -0.57 0.63 16 3 C -0.10 -1.26 6.63 -83.55 -0.55 -1.81 16 4 C 0.60 8.44 7.66 -12.48 -0.10 8.35 16 5 O -0.53 -8.63 14.33 5.29 0.08 -8.56 16 6 N -0.60 -7.79 2.87 -182.82 -0.53 -8.32 16 7 C 0.08 0.87 9.26 59.85 0.55 1.42 16 8 C 0.12 1.69 5.28 -4.04 -0.02 1.67 16 9 C 0.04 0.67 5.29 -3.82 -0.02 0.65 16 10 N -0.53 -9.87 4.63 -234.32 -1.08 -10.96 16 11 C 0.03 0.70 5.46 -3.70 -0.02 0.68 16 12 C 0.18 4.49 5.39 -3.60 -0.02 4.47 16 13 N -0.60 -15.59 3.03 -172.01 -0.52 -16.11 16 14 C -0.25 -7.09 9.63 -15.06 -0.14 -7.24 16 15 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 16 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 17 N -0.90 -26.79 11.18 55.49 0.62 -26.17 16 18 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.15 3.29 6.69 -3.60 -0.02 3.27 16 23 C 0.05 0.87 5.62 -3.70 -0.02 0.85 16 24 N -0.20 -2.42 9.04 32.85 0.30 -2.13 16 25 N -0.07 -0.83 13.78 60.35 0.83 0.00 16 26 N -0.37 -3.02 4.03 -63.59 -0.26 -3.28 16 27 C 0.09 0.25 11.33 59.84 0.68 0.93 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.29 7.18 -51.93 -0.37 -0.08 16 30 H 0.12 1.09 6.32 -51.93 -0.33 0.76 16 31 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 32 H 0.08 0.87 5.93 -51.93 -0.31 0.56 16 33 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.09 1.40 5.75 -51.93 -0.30 1.10 16 35 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.07 0.94 7.97 -51.93 -0.41 0.52 16 37 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.21 6.16 -51.93 -0.32 0.89 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.38 6.20 -51.93 -0.32 2.06 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 1.15 7.96 -51.93 -0.41 0.74 16 45 H 0.06 0.97 7.99 -51.93 -0.41 0.55 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 48 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.10 0.07 7.16 -51.93 -0.37 -0.30 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -34.69 387.78 -7.50 -42.19 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.75 Total: -3.11 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 0.00 Total: 13.46 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.64 Total: -66.96 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.69 -7.50 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494093667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.049 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds