Wall clock time and date at job start Tue Mar 31 2020 19:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36593 * 126.57774 * 2 1 4 4 C 1.47523 * 125.77379 * 359.97438 * 3 2 1 5 5 O 1.21591 * 120.00198 * 6.07412 * 4 3 2 6 6 N 1.34778 * 119.99753 * 186.07481 * 4 3 2 7 7 C 1.46503 * 120.00065 * 4.95348 * 6 4 3 8 8 C 1.46496 * 119.99752 * 185.22999 * 6 4 3 9 9 C 1.52998 * 109.47147 * 269.72516 * 8 6 4 10 10 N 1.46900 * 109.47205 * 179.97438 * 9 8 6 11 11 C 1.46895 * 111.00190 * 294.29896 * 10 9 8 12 12 C 1.53237 * 109.34253 * 172.74421 * 11 10 9 13 13 N 1.47087 * 108.52002 * 53.83156 * 12 11 10 14 14 C 1.36938 * 120.88211 * 128.83298 * 13 12 11 15 15 H 1.07998 * 120.00505 * 208.23313 * 14 13 12 16 16 C 1.38815 * 119.99647 * 28.23833 * 14 13 12 17 17 N 1.31618 * 120.00250 * 15.45349 * 16 14 13 18 18 Si 1.86801 * 119.99712 * 195.45690 * 16 14 13 19 19 H 1.48502 * 109.47028 * 90.00321 * 18 16 14 20 20 H 1.48503 * 109.47074 * 209.99711 * 18 16 14 21 21 H 1.48493 * 109.47180 * 329.99930 * 18 16 14 22 22 C 1.47073 * 118.23751 * 308.81885 * 13 12 11 23 23 C 1.46906 * 110.99962 * 169.99922 * 10 9 8 24 24 N 1.34408 * 108.45408 * 180.24345 * 3 2 1 25 25 N 1.28756 * 109.52169 * 359.58532 * 24 3 2 26 26 N 1.34816 * 126.57921 * 180.02562 * 2 1 3 27 27 C 1.46496 * 126.59241 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.46928 * 89.99709 * 1 2 3 29 29 H 1.08997 * 109.47024 * 210.00169 * 1 2 3 30 30 H 1.09006 * 109.46944 * 329.99917 * 1 2 3 31 31 H 1.09000 * 109.47029 * 276.18796 * 7 6 4 32 32 H 1.08992 * 109.46965 * 36.19470 * 7 6 4 33 33 H 1.08997 * 109.46733 * 156.19555 * 7 6 4 34 34 H 1.09006 * 109.47529 * 29.72466 * 8 6 4 35 35 H 1.08997 * 109.47456 * 149.72392 * 8 6 4 36 36 H 1.08999 * 109.47097 * 300.00028 * 9 8 6 37 37 H 1.09002 * 109.47586 * 60.00081 * 9 8 6 38 38 H 1.09003 * 109.49461 * 292.70911 * 11 10 9 39 39 H 1.09000 * 109.49102 * 52.79203 * 11 10 9 40 40 H 1.09000 * 109.63056 * 294.12894 * 12 11 10 41 41 H 1.08997 * 109.62941 * 173.54142 * 12 11 10 42 42 H 0.97006 * 120.00248 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.62855 * 291.47001 * 22 13 12 44 44 H 1.09005 * 109.79166 * 170.98822 * 22 13 12 45 45 H 1.09003 * 109.49312 * 307.21283 * 23 10 9 46 46 H 1.08997 * 109.49212 * 67.29600 * 23 10 9 47 47 H 1.09004 * 109.46943 * 90.00628 * 27 26 2 48 48 H 1.09005 * 109.47341 * 209.99963 * 27 26 2 49 49 H 1.09002 * 109.47531 * 330.00370 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6916 2.7647 0.1104 6 7 2.7756 3.4967 -0.1240 7 6 4.1854 3.1807 -0.3664 8 6 2.3469 4.8929 -0.0098 9 6 1.9631 5.4232 -1.3926 10 7 1.5327 6.8231 -1.2780 11 6 0.2925 6.9304 -0.4981 12 6 -0.0234 8.4089 -0.2480 13 7 -0.0398 9.1085 -1.5417 14 6 -1.0994 9.8984 -1.9002 15 1 -1.3441 10.0330 -2.9434 16 6 -1.8590 10.5262 -0.9225 17 7 -1.4007 10.6204 0.3077 18 14 -3.5319 11.2375 -1.3530 19 1 -4.5771 10.2025 -1.1490 20 1 -3.8135 12.4043 -0.4787 21 1 -3.5349 11.6709 -2.7732 22 6 1.1121 8.9374 -2.4400 23 6 1.3833 7.4382 -2.6038 24 7 3.5984 0.6788 -0.0054 25 7 3.6299 -0.6084 0.0000 26 7 2.3105 -1.0826 -0.0005 27 6 1.8863 -2.4848 -0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 4.6783 2.9676 0.5822 32 1 4.2558 2.3087 -1.0164 33 1 4.6711 4.0309 -0.8452 34 1 1.4855 4.9554 0.6553 35 1 3.1628 5.4915 0.3953 36 1 2.8244 5.3608 -2.0577 37 1 1.1471 4.8247 -1.7978 38 1 -0.5266 6.4722 -1.0524 39 1 0.4176 6.4188 0.4562 40 1 0.7431 8.8437 0.3936 41 1 -0.9991 8.4991 0.2295 42 1 -1.9317 11.0588 0.9909 43 1 1.9877 9.4230 -2.0091 44 1 0.8906 9.3778 -3.4122 45 1 2.2995 7.2947 -3.1766 46 1 0.5490 6.9729 -3.1287 47 1 1.7809 -2.8324 -1.0283 48 1 2.6332 -3.0904 0.5129 49 1 0.9294 -2.5751 0.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494093667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:59 Heat of formation + Delta-G solvation = 86.874399 kcal Electronic energy + Delta-G solvation = -29522.472537 eV Core-core repulsion = 25522.485894 eV Total energy + Delta-G solvation = -3999.986643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.35499 -40.77264 -39.60536 -37.14107 -36.17436 -35.63241 -33.55021 -33.22227 -31.65509 -30.90689 -29.09205 -28.42527 -27.99795 -27.16939 -25.27276 -24.31590 -24.03438 -22.85661 -21.89679 -20.83495 -20.60811 -18.73813 -18.58125 -17.58653 -17.47573 -16.88261 -16.84813 -16.45512 -15.99078 -15.87939 -15.40320 -15.25395 -15.20586 -15.10598 -14.92310 -14.48522 -14.27104 -14.17995 -14.05980 -13.93689 -13.86365 -13.49654 -13.24306 -13.19598 -13.03599 -12.92735 -12.71169 -12.63167 -12.39441 -12.13855 -12.02362 -11.96893 -11.82619 -11.53828 -11.40017 -11.20895 -11.03961 -10.58849 -10.26987 -9.72924 -9.30470 -8.65966 -7.86616 -5.33424 0.07526 0.56891 1.10433 1.46380 1.48161 1.57023 1.86896 2.14162 2.51087 3.01518 3.14892 3.28873 3.36908 3.59728 3.67830 3.69913 3.92728 4.12132 4.26633 4.28348 4.33942 4.35121 4.40601 4.49593 4.52361 4.56987 4.60860 4.64160 4.65149 4.70182 4.75158 4.80610 4.84269 4.87936 4.98944 5.04028 5.04570 5.12911 5.21688 5.37516 5.44871 5.51517 5.62020 5.68201 6.14094 6.21446 6.26109 6.38967 6.80679 7.05909 7.14080 7.84226 8.39513 9.20221 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002257 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.565715 B =12405.541283 C =13169.436203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.130 3.870 3 C -0.131 4.131 4 C 0.595 3.405 5 O -0.563 6.563 6 N -0.600 5.600 7 C 0.086 3.914 8 C 0.127 3.873 9 C 0.053 3.947 10 N -0.532 5.532 11 C 0.053 3.947 12 C 0.189 3.811 13 N -0.615 5.615 14 C -0.265 4.265 15 H 0.067 0.933 16 C -0.052 4.052 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.145 3.855 23 C 0.056 3.944 24 N -0.211 5.211 25 N -0.094 5.094 26 N -0.353 5.353 27 C 0.072 3.928 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.015 0.985 38 H 0.010 0.990 39 H 0.077 0.923 40 H 0.004 0.996 41 H 0.053 0.947 42 H 0.250 0.750 43 H 0.021 0.979 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.017 0.983 47 H 0.108 0.892 48 H 0.112 0.888 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -29.249 -1.422 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.009 4.009 3 C -0.271 4.271 4 C 0.382 3.618 5 O -0.441 6.441 6 N -0.331 5.331 7 C -0.056 4.056 8 C 0.004 3.996 9 C -0.076 4.076 10 N -0.258 5.258 11 C -0.076 4.076 12 C 0.063 3.937 13 N -0.340 5.340 14 C -0.395 4.395 15 H 0.084 0.916 16 C -0.248 4.248 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.192 1.192 22 C 0.020 3.980 23 C -0.074 4.074 24 N -0.084 5.084 25 N -0.074 5.074 26 N -0.138 5.138 27 C -0.067 4.067 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.036 0.964 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.288 -29.223 -1.010 30.997 hybrid contribution -2.388 0.418 -0.310 2.444 sum 7.900 -28.805 -1.319 29.898 Atomic orbital electron populations 1.20825 0.82757 1.06267 1.05516 1.22270 0.97272 0.86007 0.95354 1.21139 0.89803 0.95180 1.20951 1.17105 0.85037 0.83431 0.76202 1.90771 1.17134 1.83854 1.52359 1.47701 1.09816 1.05512 1.70089 1.22083 0.78620 1.02504 1.02358 1.21414 1.01608 0.79845 0.96730 1.22345 0.99657 0.87582 0.97978 1.61881 1.31603 1.15695 1.16580 1.22587 0.89474 0.98296 0.97286 1.20583 0.98612 0.87668 0.86880 1.44389 1.18123 1.53694 1.17752 1.19522 1.05579 1.21834 0.92540 0.91566 1.25867 1.03293 0.99201 0.96398 1.70179 1.37732 1.47310 1.02861 0.85229 0.79978 0.77264 0.77745 1.21335 1.21929 1.19215 1.21127 0.89287 0.93723 0.93899 1.22495 1.00124 0.95584 0.89163 1.74728 1.19060 1.04299 1.10348 1.81889 0.97805 1.03520 1.24179 1.50579 1.05268 1.09260 1.48711 1.22716 1.04132 0.73202 1.06612 0.87981 0.86881 0.89088 0.91784 0.90306 0.89194 0.91567 0.87793 0.89026 0.96712 0.97215 0.90475 0.97808 0.92857 0.94045 0.96094 0.92011 0.88337 0.96423 0.87329 0.86911 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 9.64 71.24 0.69 -0.49 16 2 C 0.13 2.34 7.02 41.72 0.29 2.63 16 3 C -0.13 -3.16 6.63 40.81 0.27 -2.89 16 4 C 0.60 16.78 7.66 86.69 0.66 17.44 16 5 O -0.56 -18.71 14.33 -4.00 -0.06 -18.77 16 6 N -0.60 -15.15 2.87 -850.58 -2.44 -17.60 16 7 C 0.09 1.67 9.26 127.77 1.18 2.85 16 8 C 0.13 3.47 5.28 86.38 0.46 3.93 16 9 C 0.05 1.58 5.29 86.30 0.46 2.03 16 10 N -0.53 -19.26 4.63 -895.25 -4.14 -23.41 16 11 C 0.05 2.24 5.46 86.38 0.47 2.71 16 12 C 0.19 9.76 5.39 86.35 0.47 10.23 16 13 N -0.62 -32.77 3.03 -698.12 -2.12 -34.88 16 14 C -0.26 -15.16 9.63 84.03 0.81 -14.35 16 15 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 16 C -0.05 -3.02 4.96 84.86 0.42 -2.60 16 17 N -0.93 -57.07 11.18 21.65 0.24 -56.83 16 18 Si 0.97 46.20 29.58 68.60 2.03 48.23 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 C 0.15 6.32 6.69 86.35 0.58 6.89 16 23 C 0.06 2.00 5.62 86.38 0.49 2.48 16 24 N -0.21 -5.01 9.04 -49.99 -0.45 -5.47 16 25 N -0.09 -2.00 13.78 37.02 0.51 -1.49 16 26 N -0.35 -5.10 4.03 -355.09 -1.43 -6.54 16 27 C 0.07 0.18 11.33 127.77 1.45 1.63 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 0.50 7.18 -2.39 -0.02 0.48 16 30 H 0.09 1.68 6.32 -2.38 -0.02 1.67 16 31 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16 32 H 0.08 1.60 5.93 -2.39 -0.01 1.59 16 33 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 34 H 0.07 2.12 5.75 -2.38 -0.01 2.11 16 35 H 0.10 2.53 8.07 -2.39 -0.02 2.51 16 36 H 0.09 2.29 7.97 -2.39 -0.02 2.27 16 37 H 0.01 0.49 8.12 -2.39 -0.02 0.47 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 3.02 6.16 -2.39 -0.01 3.01 16 40 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.05 3.09 6.20 -2.39 -0.01 3.07 16 42 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 2.55 7.96 -2.38 -0.02 2.54 16 45 H 0.10 2.83 7.99 -2.39 -0.02 2.81 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.11 -0.06 8.14 -2.38 -0.02 -0.07 16 48 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 49 H 0.12 -0.35 7.16 -2.39 -0.02 -0.36 16 Total: -1.00 -77.81 387.78 1.77 -76.04 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.95 Total: 8.20 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 8.69 Total: 32.50 kcal Atomic # 7 Polarization: -136.37 SS G_CDS: -9.84 Total: -146.21 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.06 Total: -18.77 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -77.81 1.77 -76.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494093667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.916 kcal (2) G-P(sol) polarization free energy of solvation -77.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds