Wall clock time and date at job start Tue Mar 31 2020 21:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47515 * 119.99553 * 2 1 3 5 5 C 1.52999 * 109.47121 * 60.00239 * 4 2 1 6 6 C 1.53001 * 109.47051 * 59.99966 * 5 4 2 7 7 C 1.52999 * 109.47186 * 299.99994 * 6 5 4 8 8 C 1.53002 * 109.47500 * 239.99896 * 2 1 3 9 9 C 1.52999 * 109.47016 * 59.99352 * 8 2 1 10 10 N 1.46496 * 109.47148 * 176.13864 * 9 8 2 11 11 C 1.36933 * 120.00257 * 175.03307 * 10 9 8 12 12 H 1.08007 * 119.99714 * 0.02562 * 11 10 9 13 13 C 1.38809 * 120.00407 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99675 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00302 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47121 * 59.99921 * 15 13 11 17 17 H 1.48505 * 109.47357 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47061 * 299.99947 * 15 13 11 19 19 N 1.46496 * 109.47178 * 179.97438 * 8 2 1 20 20 C 1.34778 * 120.00177 * 301.88876 * 19 8 2 21 21 O 1.21282 * 119.99641 * 355.44499 * 20 19 8 22 22 C 1.50700 * 119.99971 * 175.44795 * 20 19 8 23 23 C 1.52996 * 109.46865 * 180.02562 * 22 20 19 24 24 N 1.46506 * 109.47110 * 180.02562 * 23 22 20 25 25 C 1.34591 * 126.44181 * 124.99745 * 24 23 22 26 26 N 1.31072 * 106.68404 * 180.02562 * 25 24 23 27 27 N 1.28848 * 107.98645 * 359.97438 * 26 25 24 28 28 N 1.28738 * 109.39650 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46745 * 300.00053 * 1 2 3 31 31 H 1.08993 * 109.47191 * 60.00606 * 1 2 3 32 32 H 1.08994 * 109.47652 * 180.02562 * 4 2 1 33 33 H 1.09007 * 109.46866 * 300.00236 * 4 2 1 34 34 H 1.08993 * 109.47153 * 180.02562 * 5 4 2 35 35 H 1.09007 * 109.46683 * 300.00031 * 5 4 2 36 36 H 1.08994 * 109.46718 * 60.00435 * 6 5 4 37 37 H 1.08995 * 109.46715 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47332 * 300.00558 * 7 6 5 39 39 H 1.09000 * 109.47198 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47373 * 296.14398 * 9 8 2 41 41 H 1.09003 * 109.46863 * 56.13885 * 9 8 2 42 42 H 0.96997 * 119.99950 * 355.03376 * 10 9 8 43 43 H 0.97003 * 119.99733 * 179.97438 * 14 13 11 44 44 H 0.97004 * 119.99655 * 121.89122 * 19 8 2 45 45 H 1.09004 * 109.47234 * 59.99760 * 22 20 19 46 46 H 1.09000 * 109.46966 * 300.00157 * 22 20 19 47 47 H 1.08997 * 109.47139 * 59.99975 * 23 22 20 48 48 H 1.09000 * 109.47357 * 299.99795 * 23 22 20 49 49 H 1.08004 * 126.65852 * 359.96128 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.5302 -2.1637 1.2494 6 6 2.0402 -2.8849 0.0001 7 6 1.5301 -2.1638 -1.2491 8 6 2.0401 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4985 10 7 2.0929 -0.6349 -3.6928 11 6 1.6973 -0.2238 -4.9376 12 1 0.9706 0.5688 -5.0389 13 6 2.2302 -0.8256 -6.0693 14 7 3.1162 -1.7911 -5.9458 15 14 1.6901 -0.2652 -7.7674 16 1 2.0140 1.1737 -7.9401 17 1 2.4009 -1.0606 -8.8006 18 1 0.2255 -0.4637 -7.9115 19 7 3.5051 -0.7207 -1.2494 20 6 4.1785 0.4461 -1.2113 21 8 3.5745 1.4967 -1.2602 22 6 5.6820 0.4453 -1.1079 23 6 6.1921 1.8875 -1.0823 24 7 7.6538 1.8868 -0.9824 25 6 8.5124 2.5018 -1.8167 26 7 9.7182 2.2489 -1.3692 27 7 9.6058 1.5171 -0.3147 28 7 8.3598 1.2963 -0.0782 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.1300 -0.7207 1.2495 33 1 1.6767 -0.2072 2.1393 34 1 1.8932 -2.6772 2.1395 35 1 0.4401 -2.1636 1.2494 36 1 3.1301 -2.8849 0.0002 37 1 1.6766 -3.9124 0.0001 38 1 0.4401 -2.1638 -1.2491 39 1 1.8938 -2.6774 -2.1391 40 1 0.4422 -0.0597 -2.5337 41 1 1.8356 1.0456 -2.4645 42 1 2.7457 -1.3465 -3.6018 43 1 3.4883 -2.2120 -6.7366 44 1 3.9904 -1.5601 -1.2771 45 1 6.1050 -0.0749 -1.9673 46 1 5.9829 -0.0625 -0.1916 47 1 5.7691 2.4073 -0.2227 48 1 5.8912 2.3958 -1.9984 49 1 8.2574 3.0887 -2.6867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495328491.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:40 Heat of formation + Delta-G solvation = 83.524988 kcal Electronic energy + Delta-G solvation = -30735.807669 eV Core-core repulsion = 26735.675785 eV Total energy + Delta-G solvation = -4000.131884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.28705 -40.78180 -38.42674 -36.11747 -34.80500 -33.44695 -32.64841 -32.22089 -31.66986 -31.00086 -29.52926 -26.84716 -25.69443 -25.04776 -23.93987 -23.04157 -22.65049 -22.03952 -20.86580 -20.22944 -18.33317 -18.00546 -17.23795 -17.19413 -16.70081 -16.02370 -15.78899 -15.58286 -15.42610 -14.54215 -14.36003 -14.12453 -13.91033 -13.57955 -13.32452 -13.20911 -13.07646 -12.79180 -12.74064 -12.44839 -12.33860 -12.22462 -12.00756 -11.71914 -11.52917 -11.47408 -11.30362 -11.18133 -11.00512 -10.98939 -10.87418 -10.79464 -10.46984 -10.34094 -10.20390 -10.11502 -9.96944 -9.71343 -9.38146 -8.82970 -8.62001 -6.90305 -5.80579 -3.06735 1.11340 1.79582 2.12763 2.78392 3.32067 3.40664 3.45636 3.46214 4.04322 4.12639 4.38295 4.55252 4.63297 4.65118 4.81180 4.83793 4.87204 5.04370 5.17878 5.21133 5.25858 5.33963 5.43126 5.44308 5.47554 5.55299 5.60476 5.62740 5.70788 5.74265 5.76668 5.93896 5.99407 6.02732 6.10870 6.13340 6.16266 6.25517 6.39077 6.45138 6.46053 6.52784 6.66131 6.84379 7.04495 7.67050 7.72999 8.39311 8.39767 8.46715 9.50750 10.09037 10.44390 11.42471 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007411 B = 0.004404 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.189230 B = 6356.975007 C = 9195.858612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.183 3.817 9 C 0.141 3.859 10 N -0.726 5.726 11 C -0.232 4.232 12 H 0.067 0.933 13 C -0.014 4.014 14 N -0.937 5.937 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.287 1.287 19 N -0.704 5.704 20 C 0.530 3.470 21 O -0.535 6.535 22 C -0.159 4.159 23 C 0.132 3.868 24 N -0.305 5.305 25 C 0.164 3.836 26 N -0.311 5.311 27 N -0.081 5.081 28 N -0.094 5.094 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.042 0.958 42 H 0.381 0.619 43 H 0.254 0.746 44 H 0.398 0.602 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.126 0.874 49 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 2.596 14.626 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.159 4.159 8 C 0.097 3.903 9 C 0.013 3.987 10 N -0.370 5.370 11 C -0.363 4.363 12 H 0.085 0.915 13 C -0.210 4.210 14 N -0.586 5.586 15 Si 0.736 3.264 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.213 1.213 19 N -0.354 5.354 20 C 0.315 3.685 21 O -0.412 6.412 22 C -0.200 4.200 23 C 0.011 3.989 24 N -0.107 5.107 25 C -0.134 4.134 26 N -0.160 5.160 27 N -0.075 5.075 28 N -0.081 5.081 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.215 0.785 43 H 0.064 0.936 44 H 0.233 0.767 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.132 0.868 48 H 0.144 0.856 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.473 2.860 15.356 15.690 hybrid contribution -0.613 -0.069 -1.801 1.904 sum 0.860 2.791 13.556 13.867 Atomic orbital electron populations 1.21962 0.94925 1.01964 1.01750 1.21422 0.95993 1.00965 0.93464 0.89189 1.21499 1.00358 0.95436 0.97367 1.21576 1.00985 0.95731 0.97470 1.21552 1.00470 0.98904 0.94741 1.21821 1.01853 0.93997 0.98273 1.20580 0.78358 0.95867 0.95472 1.21166 0.95861 0.96526 0.85191 1.42219 1.51080 1.43489 1.00241 1.19180 1.18961 1.14539 0.83625 0.91458 1.24663 0.99730 0.99010 0.97591 1.69630 1.32971 1.27664 1.28376 0.86306 0.77914 0.77779 0.84431 1.21400 1.21771 1.21348 1.45881 1.07270 1.08079 1.74181 1.19788 0.88187 0.84392 0.76159 1.90675 1.69763 1.31160 1.49621 1.21903 0.94994 0.96754 1.06324 1.22036 0.70261 0.99161 1.07464 1.48844 1.11072 1.32926 1.17880 1.27807 0.85245 1.00592 0.99795 1.75004 1.20257 1.13783 1.06948 1.78624 1.08066 1.11475 1.09365 1.78838 0.99679 1.16465 1.13095 0.92234 0.93099 0.91963 0.92390 0.92509 0.92635 0.91735 0.92342 0.92022 0.90267 0.90150 0.95520 0.94018 0.78541 0.93630 0.76732 0.87696 0.87424 0.86760 0.85616 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.15 37.16 0.30 -1.45 16 2 C -0.10 -1.25 2.01 -90.62 -0.18 -1.43 16 3 H 0.09 1.32 6.19 -51.93 -0.32 0.99 16 4 C -0.11 -1.15 5.29 -26.73 -0.14 -1.29 16 5 C -0.12 -1.17 5.65 -26.73 -0.15 -1.32 16 6 C -0.12 -1.26 5.75 -26.73 -0.15 -1.41 16 7 C -0.12 -1.63 4.36 -26.73 -0.12 -1.75 16 8 C 0.18 2.61 0.09 -131.82 -0.01 2.60 16 9 C 0.14 2.70 4.45 -4.04 -0.02 2.68 16 10 N -0.73 -17.05 5.12 -59.91 -0.31 -17.35 16 11 C -0.23 -6.26 9.99 -15.06 -0.15 -6.41 16 12 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 14 N -0.94 -27.05 13.06 55.49 0.72 -26.33 16 15 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 N -0.70 -9.21 3.44 -47.61 -0.16 -9.37 16 20 C 0.53 6.99 7.24 -10.98 -0.08 6.91 16 21 O -0.53 -8.51 12.25 5.56 0.07 -8.44 16 22 C -0.16 -1.58 5.84 -27.89 -0.16 -1.74 16 23 C 0.13 1.17 5.77 -4.04 -0.02 1.15 16 24 N -0.31 -3.15 3.44 -62.55 -0.22 -3.37 16 25 C 0.16 1.60 12.79 -90.40 -1.16 0.44 16 26 N -0.31 -4.13 12.36 29.59 0.37 -3.77 16 27 N -0.08 -1.18 13.43 60.35 0.81 -0.37 16 28 N -0.09 -1.22 13.07 60.35 0.79 -0.43 16 29 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.81 6.52 -51.93 -0.34 0.48 16 32 H 0.06 0.62 7.61 -51.93 -0.39 0.22 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 36 H 0.06 0.58 6.90 -51.93 -0.36 0.22 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.07 6.43 -51.93 -0.33 0.74 16 39 H 0.08 1.29 7.21 -51.93 -0.37 0.91 16 40 H 0.03 0.53 6.64 -51.93 -0.34 0.18 16 41 H 0.04 0.90 6.27 -51.93 -0.33 0.57 16 42 H 0.38 9.19 6.57 -40.82 -0.27 8.93 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.40 4.62 7.39 -40.82 -0.30 4.32 16 45 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.11 0.95 8.10 -51.93 -0.42 0.53 16 48 H 0.13 1.02 8.04 -51.93 -0.42 0.60 16 49 H 0.24 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -33.28 378.08 -6.68 -39.96 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -7.29 Total: 10.33 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.14 Total: -3.51 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 2.00 Total: -60.99 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.07 Total: -8.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.28 -6.68 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328491.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.487 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds