Wall clock time and date at job start Tue Mar 31 2020 21:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47515 * 119.99553 * 2 1 3 5 5 C 1.52999 * 109.47121 * 60.00239 * 4 2 1 6 6 C 1.53001 * 109.47051 * 59.99966 * 5 4 2 7 7 C 1.52999 * 109.47186 * 299.99994 * 6 5 4 8 8 C 1.53002 * 109.47500 * 239.99896 * 2 1 3 9 9 C 1.52999 * 109.47016 * 59.99352 * 8 2 1 10 10 N 1.46496 * 109.47148 * 176.13864 * 9 8 2 11 11 C 1.36933 * 120.00257 * 175.03307 * 10 9 8 12 12 H 1.08007 * 119.99714 * 0.02562 * 11 10 9 13 13 C 1.38809 * 120.00407 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99675 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00302 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47121 * 59.99921 * 15 13 11 17 17 H 1.48505 * 109.47357 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47061 * 299.99947 * 15 13 11 19 19 N 1.46496 * 109.47178 * 179.97438 * 8 2 1 20 20 C 1.34778 * 120.00177 * 301.88876 * 19 8 2 21 21 O 1.21282 * 119.99641 * 355.44499 * 20 19 8 22 22 C 1.50700 * 119.99971 * 175.44795 * 20 19 8 23 23 C 1.52996 * 109.46865 * 180.02562 * 22 20 19 24 24 N 1.46506 * 109.47110 * 180.02562 * 23 22 20 25 25 C 1.34591 * 126.44181 * 124.99745 * 24 23 22 26 26 N 1.31072 * 106.68404 * 180.02562 * 25 24 23 27 27 N 1.28848 * 107.98645 * 359.97438 * 26 25 24 28 28 N 1.28738 * 109.39650 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46745 * 300.00053 * 1 2 3 31 31 H 1.08993 * 109.47191 * 60.00606 * 1 2 3 32 32 H 1.08994 * 109.47652 * 180.02562 * 4 2 1 33 33 H 1.09007 * 109.46866 * 300.00236 * 4 2 1 34 34 H 1.08993 * 109.47153 * 180.02562 * 5 4 2 35 35 H 1.09007 * 109.46683 * 300.00031 * 5 4 2 36 36 H 1.08994 * 109.46718 * 60.00435 * 6 5 4 37 37 H 1.08995 * 109.46715 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47332 * 300.00558 * 7 6 5 39 39 H 1.09000 * 109.47198 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47373 * 296.14398 * 9 8 2 41 41 H 1.09003 * 109.46863 * 56.13885 * 9 8 2 42 42 H 0.96997 * 119.99950 * 355.03376 * 10 9 8 43 43 H 0.97003 * 119.99733 * 179.97438 * 14 13 11 44 44 H 0.97004 * 119.99655 * 121.89122 * 19 8 2 45 45 H 1.09004 * 109.47234 * 59.99760 * 22 20 19 46 46 H 1.09000 * 109.46966 * 300.00157 * 22 20 19 47 47 H 1.08997 * 109.47139 * 59.99975 * 23 22 20 48 48 H 1.09000 * 109.47357 * 299.99795 * 23 22 20 49 49 H 1.08004 * 126.65852 * 359.96128 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.5302 -2.1637 1.2494 6 6 2.0402 -2.8849 0.0001 7 6 1.5301 -2.1638 -1.2491 8 6 2.0401 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4985 10 7 2.0929 -0.6349 -3.6928 11 6 1.6973 -0.2238 -4.9376 12 1 0.9706 0.5688 -5.0389 13 6 2.2302 -0.8256 -6.0693 14 7 3.1162 -1.7911 -5.9458 15 14 1.6901 -0.2652 -7.7674 16 1 2.0140 1.1737 -7.9401 17 1 2.4009 -1.0606 -8.8006 18 1 0.2255 -0.4637 -7.9115 19 7 3.5051 -0.7207 -1.2494 20 6 4.1785 0.4461 -1.2113 21 8 3.5745 1.4967 -1.2602 22 6 5.6820 0.4453 -1.1079 23 6 6.1921 1.8875 -1.0823 24 7 7.6538 1.8868 -0.9824 25 6 8.5124 2.5018 -1.8167 26 7 9.7182 2.2489 -1.3692 27 7 9.6058 1.5171 -0.3147 28 7 8.3598 1.2963 -0.0782 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.1300 -0.7207 1.2495 33 1 1.6767 -0.2072 2.1393 34 1 1.8932 -2.6772 2.1395 35 1 0.4401 -2.1636 1.2494 36 1 3.1301 -2.8849 0.0002 37 1 1.6766 -3.9124 0.0001 38 1 0.4401 -2.1638 -1.2491 39 1 1.8938 -2.6774 -2.1391 40 1 0.4422 -0.0597 -2.5337 41 1 1.8356 1.0456 -2.4645 42 1 2.7457 -1.3465 -3.6018 43 1 3.4883 -2.2120 -6.7366 44 1 3.9904 -1.5601 -1.2771 45 1 6.1050 -0.0749 -1.9673 46 1 5.9829 -0.0625 -0.1916 47 1 5.7691 2.4073 -0.2227 48 1 5.8912 2.3958 -1.9984 49 1 8.2574 3.0887 -2.6867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495328491.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:39 Heat of formation + Delta-G solvation = 61.978124 kcal Electronic energy + Delta-G solvation = -30736.742011 eV Core-core repulsion = 26735.675785 eV Total energy + Delta-G solvation = -4001.066226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.18330 -41.88619 -39.46379 -37.01442 -36.42942 -34.76436 -33.61827 -33.39686 -32.78170 -32.29050 -30.85012 -27.94561 -26.96243 -26.23648 -24.82091 -24.68608 -23.59258 -23.05069 -22.00215 -21.30063 -19.49605 -19.10744 -18.82870 -18.09468 -17.68543 -17.01597 -16.76482 -16.76257 -16.51794 -16.18839 -15.55600 -15.13517 -15.08970 -14.88348 -14.68662 -14.47565 -14.09980 -13.91370 -13.73132 -13.64625 -13.54984 -13.20494 -13.06806 -12.88737 -12.80307 -12.66219 -12.54560 -12.43601 -12.23123 -12.21499 -12.12001 -11.92437 -11.86820 -11.79823 -11.36771 -11.23800 -11.10613 -11.04536 -10.87990 -10.39091 -9.78716 -8.89720 -7.93450 -5.18381 0.26106 0.99241 1.20829 1.46787 1.47699 1.54012 1.72196 2.30444 2.56847 3.24389 3.39745 3.45917 3.57769 3.63657 3.81395 3.83311 3.87588 3.94114 4.13430 4.25920 4.27545 4.35933 4.39796 4.47120 4.48916 4.57029 4.58995 4.65677 4.72512 4.79145 4.82843 4.86969 4.94314 5.01088 5.16662 5.20733 5.20794 5.22331 5.29466 5.29723 5.42721 5.46624 5.49775 5.54072 5.61352 5.81012 6.29407 6.66107 7.34078 7.37537 7.54841 8.13888 8.41006 9.29122 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007411 B = 0.004404 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.189230 B = 6356.975007 C = 9195.858612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.103 4.103 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.191 3.809 9 C 0.144 3.856 10 N -0.729 5.729 11 C -0.240 4.240 12 H 0.064 0.936 13 C -0.066 4.066 14 N -0.963 5.963 15 Si 0.963 3.037 16 H -0.282 1.282 17 H -0.295 1.295 18 H -0.282 1.282 19 N -0.703 5.703 20 C 0.526 3.474 21 O -0.563 6.563 22 C -0.148 4.148 23 C 0.135 3.865 24 N -0.301 5.301 25 C 0.179 3.821 26 N -0.342 5.342 27 N -0.111 5.111 28 N -0.105 5.105 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.406 0.594 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.137 0.863 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 2.598 15.611 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.141 4.141 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.154 4.154 8 C 0.105 3.895 9 C 0.016 3.984 10 N -0.372 5.372 11 C -0.372 4.372 12 H 0.082 0.918 13 C -0.259 4.259 14 N -0.614 5.614 15 Si 0.793 3.207 16 H -0.209 1.209 17 H -0.221 1.221 18 H -0.208 1.208 19 N -0.353 5.353 20 C 0.312 3.688 21 O -0.443 6.443 22 C -0.189 4.189 23 C 0.015 3.985 24 N -0.103 5.103 25 C -0.119 4.119 26 N -0.190 5.190 27 N -0.106 5.106 28 N -0.093 5.093 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.242 0.758 45 H 0.121 0.879 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.155 0.845 49 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 1.064 2.864 16.370 16.653 hybrid contribution -0.577 -0.007 -2.129 2.205 sum 0.487 2.857 14.241 14.533 Atomic orbital electron populations 1.21952 0.94369 1.02496 1.01650 1.21335 0.96426 0.99842 0.93612 0.91202 1.21462 1.00393 0.95894 0.96325 1.21557 1.01234 0.94940 0.97538 1.21522 1.00941 0.99107 0.93479 1.21731 1.01612 0.93262 0.98769 1.20393 0.79180 0.96060 0.93868 1.21204 0.95338 0.95720 0.86114 1.42293 1.50950 1.43370 1.00583 1.19488 1.18422 1.14057 0.85219 0.91844 1.25330 1.00313 0.99538 1.00700 1.69762 1.34138 1.28770 1.28770 0.85373 0.77568 0.77346 0.80443 1.20878 1.22080 1.20799 1.45880 1.06838 1.08681 1.73946 1.20300 0.89449 0.83808 0.75230 1.90668 1.70693 1.32075 1.50822 1.21808 0.92313 0.97753 1.06976 1.22116 0.69384 0.98559 1.08471 1.48909 1.11391 1.32517 1.17469 1.28610 0.84077 0.99340 0.99907 1.74941 1.22187 1.14647 1.07265 1.78602 1.08860 1.12674 1.10421 1.78770 0.99518 1.17032 1.13937 0.91355 0.91319 0.93968 0.92310 0.91251 0.90702 0.91349 0.91566 0.90978 0.90574 0.93087 0.96176 0.96149 0.79056 0.94148 0.75805 0.87878 0.85894 0.85946 0.84514 0.70568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.15 71.98 0.59 -2.74 16 2 C -0.09 -2.24 2.01 -10.79 -0.02 -2.27 16 3 H 0.07 2.02 6.19 -2.38 -0.01 2.00 16 4 C -0.10 -1.92 5.29 30.59 0.16 -1.76 16 5 C -0.12 -1.88 5.65 30.59 0.17 -1.71 16 6 C -0.11 -2.14 5.75 30.59 0.18 -1.96 16 7 C -0.12 -3.05 4.36 30.60 0.13 -2.91 16 8 C 0.19 5.42 0.09 3.61 0.00 5.42 16 9 C 0.14 5.64 4.45 86.38 0.38 6.03 16 10 N -0.73 -34.88 5.12 -343.45 -1.76 -36.64 16 11 C -0.24 -13.10 9.99 84.03 0.84 -12.26 16 12 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 13 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 14 N -0.96 -56.07 13.06 21.65 0.28 -55.79 16 15 Si 0.96 45.26 29.55 68.60 2.03 47.28 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 N -0.70 -18.03 3.44 -422.92 -1.46 -19.48 16 20 C 0.53 13.53 7.24 87.66 0.63 14.16 16 21 O -0.56 -17.83 12.25 -3.04 -0.04 -17.87 16 22 C -0.15 -2.73 5.84 29.85 0.17 -2.56 16 23 C 0.14 2.17 5.77 86.38 0.50 2.67 16 24 N -0.30 -5.73 3.44 -351.82 -1.21 -6.94 16 25 C 0.18 3.14 12.79 180.27 2.31 5.44 16 26 N -0.34 -8.79 12.36 -60.30 -0.75 -9.53 16 27 N -0.11 -3.21 13.43 37.01 0.50 -2.72 16 28 N -0.11 -2.64 13.07 37.02 0.48 -2.15 16 29 H 0.07 1.42 4.81 -2.39 -0.01 1.41 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.11 6.52 -2.39 -0.02 1.09 16 32 H 0.06 1.10 7.61 -2.39 -0.02 1.08 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.10 6.43 -2.38 -0.02 1.08 16 36 H 0.07 1.16 6.90 -2.39 -0.02 1.15 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 2.02 6.43 -2.39 -0.02 2.01 16 39 H 0.05 1.65 7.21 -2.39 -0.02 1.63 16 40 H 0.02 0.82 6.64 -2.39 -0.02 0.81 16 41 H 0.02 0.91 6.27 -2.39 -0.01 0.89 16 42 H 0.38 18.54 6.57 -92.71 -0.61 17.93 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.41 9.10 7.39 -92.71 -0.68 8.41 16 45 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 46 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.12 1.83 8.10 -2.39 -0.02 1.81 16 48 H 0.14 1.95 8.04 -2.39 -0.02 1.93 16 49 H 0.28 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -72.87 378.08 4.30 -68.58 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.30 Total: 32.92 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 6.51 Total: 2.35 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -3.91 Total: -133.26 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.87 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.87 4.30 -68.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328491.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.556 kcal (2) G-P(sol) polarization free energy of solvation -72.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds