Wall clock time and date at job start Tue Mar 31 2020 21:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47018 * 2 1 4 4 C 1.52998 * 109.46984 * 119.99497 * 2 1 3 5 5 C 1.53001 * 109.46984 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47300 * 300.00303 * 5 4 2 7 7 C 1.52993 * 109.47059 * 59.99807 * 6 5 4 8 8 C 1.52995 * 109.47258 * 239.99649 * 2 1 3 9 9 C 1.53009 * 109.46916 * 60.00127 * 8 2 1 10 10 N 1.46496 * 109.47202 * 54.42524 * 9 8 2 11 11 C 1.36935 * 120.00321 * 185.36872 * 10 9 8 12 12 H 1.08003 * 119.99815 * 354.39181 * 11 10 9 13 13 C 1.38808 * 120.00506 * 174.38840 * 11 10 9 14 14 N 1.31617 * 120.00151 * 183.90471 * 13 11 10 15 15 Si 1.86808 * 119.99846 * 3.90886 * 13 11 10 16 16 H 1.48494 * 109.47383 * 93.26109 * 15 13 11 17 17 H 1.48497 * 109.46743 * 213.26519 * 15 13 11 18 18 H 1.48497 * 109.46709 * 333.26163 * 15 13 11 19 19 N 1.46493 * 109.47199 * 300.00329 * 8 2 1 20 20 C 1.34779 * 120.00102 * 176.99395 * 19 8 2 21 21 O 1.21280 * 120.00088 * 5.12940 * 20 19 8 22 22 C 1.50702 * 120.00403 * 185.13203 * 20 19 8 23 23 C 1.52995 * 109.47493 * 185.25810 * 22 20 19 24 24 N 1.46494 * 109.47492 * 184.60465 * 23 22 20 25 25 C 1.34596 * 126.44127 * 124.71011 * 24 23 22 26 26 N 1.31071 * 106.68079 * 179.88160 * 25 24 23 27 27 N 1.28847 * 107.99150 * 0.38185 * 26 25 24 28 28 N 1.28742 * 109.39379 * 359.75659 * 27 26 25 29 29 H 1.09000 * 109.47028 * 300.00074 * 1 2 3 30 30 H 1.09003 * 109.46911 * 60.00154 * 1 2 3 31 31 H 1.08998 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46808 * 60.00409 * 4 2 1 33 33 H 1.09000 * 109.47588 * 300.00085 * 4 2 1 34 34 H 1.08998 * 109.47018 * 60.00503 * 5 4 2 35 35 H 1.09003 * 109.46911 * 180.02562 * 5 4 2 36 36 H 1.08993 * 109.47162 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46726 * 300.00007 * 6 5 4 38 38 H 1.09008 * 109.46860 * 60.00009 * 7 6 5 39 39 H 1.09000 * 109.47298 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47066 * 174.42755 * 9 8 2 41 41 H 1.09000 * 109.46998 * 294.42546 * 9 8 2 42 42 H 0.97009 * 119.99978 * 5.37167 * 10 9 8 43 43 H 0.96999 * 119.99873 * 180.02562 * 14 13 11 44 44 H 0.96996 * 120.00453 * 356.98935 * 19 8 2 45 45 H 1.09009 * 109.46879 * 305.25605 * 22 20 19 46 46 H 1.09002 * 109.47258 * 65.25397 * 22 20 19 47 47 H 1.08999 * 109.46947 * 304.60502 * 23 22 20 48 48 H 1.08998 * 109.47430 * 64.60075 * 23 22 20 49 49 H 1.07996 * 126.66277 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7217 1.2490 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2495 8 6 2.0400 -0.7213 -1.2491 9 6 1.5300 0.0000 -2.4985 10 7 1.9057 1.4144 -2.4333 11 6 1.4616 2.2857 -3.3918 12 1 0.9108 1.9160 -4.2441 13 6 1.7192 3.6441 -3.2681 14 7 1.2271 4.4901 -4.1481 15 14 2.7644 4.2714 -1.8526 16 1 4.1812 4.3657 -2.2872 17 1 2.2830 5.6139 -1.4389 18 1 2.6597 3.3331 -0.7064 19 7 1.5517 -2.1024 -1.2491 20 6 1.8266 -2.9144 -2.2891 21 8 2.5550 -2.5327 -3.1805 22 6 1.2288 -4.2967 -2.3445 23 6 1.7984 -5.0510 -3.5476 24 7 1.1371 -6.3528 -3.6656 25 6 0.4958 -6.8284 -4.7492 26 7 0.0559 -8.0218 -4.4324 27 7 0.4016 -8.2631 -3.2148 28 7 1.0550 -7.2566 -2.7485 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2073 2.1393 34 1 3.9337 0.3058 1.2487 35 1 3.9333 -1.2359 2.1388 36 1 5.1694 -1.4442 -0.0002 37 1 3.7158 -2.4709 0.0001 38 1 3.9332 0.3054 -1.2497 39 1 3.9321 -1.2366 -2.1394 40 1 1.9725 -0.4530 -3.3856 41 1 0.4446 -0.0857 -2.5498 42 1 2.4692 1.7339 -1.7111 43 1 1.4074 5.4392 -4.0618 44 1 1.0305 -2.4326 -0.5006 45 1 1.4735 -4.8353 -1.4289 46 1 0.1459 -4.2206 -2.4428 47 1 1.6252 -4.4719 -4.4546 48 1 2.8695 -5.1987 -3.4099 49 1 0.3703 -6.3256 -5.6967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495328492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:44 Heat of formation + Delta-G solvation = 88.298800 kcal Electronic energy + Delta-G solvation = -30530.260812 eV Core-core repulsion = 26530.335936 eV Total energy + Delta-G solvation = -3999.924876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.47140 -40.94992 -38.60996 -36.31786 -34.81055 -33.83036 -32.83180 -32.48636 -32.07928 -31.32342 -29.54362 -26.85631 -26.06311 -25.22987 -24.12739 -23.12188 -22.38059 -21.89622 -20.88555 -20.61328 -18.79514 -18.36636 -17.75426 -17.40594 -17.00899 -16.19425 -16.06354 -15.44563 -14.98433 -14.60691 -14.49282 -14.29170 -14.12957 -13.98487 -13.64020 -13.52000 -13.36086 -13.02260 -12.79071 -12.61215 -12.45256 -11.98904 -11.97043 -11.89928 -11.78032 -11.59266 -11.47971 -11.35036 -11.20756 -11.19033 -10.94954 -10.78020 -10.65625 -10.57039 -10.28792 -10.24466 -10.04972 -9.62657 -9.53700 -8.92321 -8.84600 -7.22303 -5.79576 -3.14489 0.92483 1.59103 1.95290 2.45296 3.02881 3.29974 3.34840 3.41286 3.81899 3.93996 4.12459 4.42588 4.43426 4.54939 4.66329 4.71951 4.76278 4.80206 4.93449 5.09334 5.11806 5.17336 5.17934 5.39796 5.41652 5.42004 5.48933 5.54882 5.57204 5.59981 5.66954 5.79972 5.80418 5.89786 5.95832 6.08605 6.14644 6.20516 6.25682 6.31318 6.40049 6.50840 6.63255 6.67552 6.86169 7.43957 7.97351 8.10038 8.28901 8.39314 9.18709 9.90733 10.10832 11.38928 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.003055 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.575233 B = 9163.517497 C =10254.809620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.091 0.909 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.128 4.128 8 C 0.178 3.822 9 C 0.151 3.849 10 N -0.750 5.750 11 C -0.239 4.239 12 H 0.089 0.911 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.882 3.118 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.277 1.277 19 N -0.710 5.710 20 C 0.519 3.481 21 O -0.526 6.526 22 C -0.158 4.158 23 C 0.130 3.870 24 N -0.307 5.307 25 C 0.164 3.836 26 N -0.310 5.310 27 N -0.079 5.079 28 N -0.094 5.094 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.398 0.602 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.128 0.872 48 H 0.114 0.886 49 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 -18.320 8.215 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.166 4.166 8 C 0.093 3.907 9 C 0.023 3.977 10 N -0.397 5.397 11 C -0.369 4.369 12 H 0.106 0.894 13 C -0.190 4.190 14 N -0.582 5.582 15 Si 0.712 3.288 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.204 1.204 19 N -0.362 5.362 20 C 0.304 3.696 21 O -0.402 6.402 22 C -0.199 4.199 23 C 0.008 3.992 24 N -0.109 5.109 25 C -0.135 4.135 26 N -0.159 5.159 27 N -0.073 5.073 28 N -0.081 5.081 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.233 0.767 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.147 0.853 48 H 0.133 0.867 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.411 -19.038 8.234 20.790 hybrid contribution 0.639 1.442 0.766 1.753 sum 2.049 -17.596 9.000 19.870 Atomic orbital electron populations 1.21851 0.94604 1.00937 1.03061 1.21383 0.96407 1.00628 0.92753 0.89057 1.21626 0.95670 1.00066 0.97792 1.21569 0.95633 1.01016 0.97719 1.21488 0.99885 0.99143 0.94665 1.21933 0.94189 1.01818 0.98697 1.20588 0.93855 0.79723 0.96580 1.21002 0.97219 0.85032 0.94473 1.42673 1.61741 1.03986 1.31302 1.19005 1.29391 0.87522 1.00973 0.89368 1.24646 1.00623 0.95671 0.98099 1.69702 1.48911 1.02190 1.37350 0.86599 0.80988 0.78237 0.82946 1.21139 1.21746 1.20366 1.46051 1.55825 1.12657 1.21636 1.19985 0.81295 0.85911 0.82435 1.90756 1.36297 1.75518 1.37647 1.21913 1.03056 0.94786 1.00120 1.22048 0.98308 0.76577 1.02219 1.48846 1.36760 1.15997 1.09339 1.27828 0.95919 0.93314 0.96393 1.75024 1.20786 1.12539 1.07503 1.78652 1.09631 1.16373 1.02655 1.78863 1.17343 0.95616 1.16244 0.92840 0.90688 0.93578 0.92459 0.91845 0.91889 0.92366 0.92376 0.92474 0.90976 0.89581 0.93521 0.95218 0.80569 0.93087 0.76660 0.87342 0.87768 0.85349 0.86744 0.74773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.67 37.16 0.32 -1.49 16 2 C -0.09 -1.20 1.77 -90.62 -0.16 -1.36 16 3 H 0.09 1.46 6.65 -51.93 -0.35 1.11 16 4 C -0.11 -1.14 5.03 -26.73 -0.13 -1.28 16 5 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 6 C -0.11 -1.27 5.77 -26.73 -0.15 -1.42 16 7 C -0.13 -1.81 4.44 -26.76 -0.12 -1.93 16 8 C 0.18 2.42 0.11 -131.85 -0.01 2.41 16 9 C 0.15 2.77 4.42 -4.04 -0.02 2.76 16 10 N -0.75 -16.87 4.80 -59.91 -0.29 -17.15 16 11 C -0.24 -6.58 10.47 -15.06 -0.16 -6.73 16 12 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 13 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 14 N -0.93 -28.88 13.97 55.49 0.78 -28.11 16 15 Si 0.88 21.50 27.87 -169.99 -4.74 16.77 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.18 6.34 56.52 0.36 -5.82 16 19 N -0.71 -7.13 3.73 -47.63 -0.18 -7.31 16 20 C 0.52 5.20 7.23 -10.98 -0.08 5.12 16 21 O -0.53 -7.16 12.19 5.56 0.07 -7.09 16 22 C -0.16 -1.00 5.84 -27.88 -0.16 -1.16 16 23 C 0.13 0.77 5.87 -4.05 -0.02 0.75 16 24 N -0.31 -2.39 3.44 -62.56 -0.22 -2.60 16 25 C 0.16 1.19 12.79 -90.39 -1.16 0.03 16 26 N -0.31 -3.45 12.36 29.59 0.37 -3.09 16 27 N -0.08 -0.99 13.43 60.35 0.81 -0.18 16 28 N -0.09 -1.01 13.08 60.35 0.79 -0.22 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.15 6.56 -51.93 -0.34 0.81 16 31 H 0.05 0.45 6.92 -51.93 -0.36 0.09 16 32 H 0.06 0.48 6.80 -51.92 -0.35 0.12 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 38 H 0.07 1.16 7.11 -51.92 -0.37 0.79 16 39 H 0.09 1.35 6.21 -51.93 -0.32 1.03 16 40 H 0.05 0.96 6.31 -51.93 -0.33 0.63 16 41 H 0.03 0.57 6.74 -51.93 -0.35 0.22 16 42 H 0.36 7.90 3.18 -40.82 -0.13 7.77 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.40 3.03 6.17 -40.82 -0.25 2.78 16 45 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.13 0.63 7.83 -51.93 -0.41 0.22 16 48 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.24 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -34.83 376.89 -6.40 -41.23 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.36 Total: 7.74 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.11 Total: -5.67 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 2.06 Total: -58.66 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.07 Total: -7.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.74 Total: 16.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.83 -6.40 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.528 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds