Wall clock time and date at job start Tue Mar 31 2020 21:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47018 * 2 1 4 4 C 1.52998 * 109.46984 * 119.99497 * 2 1 3 5 5 C 1.53001 * 109.46984 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47300 * 300.00303 * 5 4 2 7 7 C 1.52993 * 109.47059 * 59.99807 * 6 5 4 8 8 C 1.52995 * 109.47258 * 239.99649 * 2 1 3 9 9 C 1.53009 * 109.46916 * 60.00127 * 8 2 1 10 10 N 1.46496 * 109.47202 * 54.42524 * 9 8 2 11 11 C 1.36935 * 120.00321 * 185.36872 * 10 9 8 12 12 H 1.08003 * 119.99815 * 354.39181 * 11 10 9 13 13 C 1.38808 * 120.00506 * 174.38840 * 11 10 9 14 14 N 1.31617 * 120.00151 * 183.90471 * 13 11 10 15 15 Si 1.86808 * 119.99846 * 3.90886 * 13 11 10 16 16 H 1.48494 * 109.47383 * 93.26109 * 15 13 11 17 17 H 1.48497 * 109.46743 * 213.26519 * 15 13 11 18 18 H 1.48497 * 109.46709 * 333.26163 * 15 13 11 19 19 N 1.46493 * 109.47199 * 300.00329 * 8 2 1 20 20 C 1.34779 * 120.00102 * 176.99395 * 19 8 2 21 21 O 1.21280 * 120.00088 * 5.12940 * 20 19 8 22 22 C 1.50702 * 120.00403 * 185.13203 * 20 19 8 23 23 C 1.52995 * 109.47493 * 185.25810 * 22 20 19 24 24 N 1.46494 * 109.47492 * 184.60465 * 23 22 20 25 25 C 1.34596 * 126.44127 * 124.71011 * 24 23 22 26 26 N 1.31071 * 106.68079 * 179.88160 * 25 24 23 27 27 N 1.28847 * 107.99150 * 0.38185 * 26 25 24 28 28 N 1.28742 * 109.39379 * 359.75659 * 27 26 25 29 29 H 1.09000 * 109.47028 * 300.00074 * 1 2 3 30 30 H 1.09003 * 109.46911 * 60.00154 * 1 2 3 31 31 H 1.08998 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46808 * 60.00409 * 4 2 1 33 33 H 1.09000 * 109.47588 * 300.00085 * 4 2 1 34 34 H 1.08998 * 109.47018 * 60.00503 * 5 4 2 35 35 H 1.09003 * 109.46911 * 180.02562 * 5 4 2 36 36 H 1.08993 * 109.47162 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46726 * 300.00007 * 6 5 4 38 38 H 1.09008 * 109.46860 * 60.00009 * 7 6 5 39 39 H 1.09000 * 109.47298 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.47066 * 174.42755 * 9 8 2 41 41 H 1.09000 * 109.46998 * 294.42546 * 9 8 2 42 42 H 0.97009 * 119.99978 * 5.37167 * 10 9 8 43 43 H 0.96999 * 119.99873 * 180.02562 * 14 13 11 44 44 H 0.96996 * 120.00453 * 356.98935 * 19 8 2 45 45 H 1.09009 * 109.46879 * 305.25605 * 22 20 19 46 46 H 1.09002 * 109.47258 * 65.25397 * 22 20 19 47 47 H 1.08999 * 109.46947 * 304.60502 * 23 22 20 48 48 H 1.08998 * 109.47430 * 64.60075 * 23 22 20 49 49 H 1.07996 * 126.66277 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7217 1.2490 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2495 8 6 2.0400 -0.7213 -1.2491 9 6 1.5300 0.0000 -2.4985 10 7 1.9057 1.4144 -2.4333 11 6 1.4616 2.2857 -3.3918 12 1 0.9108 1.9160 -4.2441 13 6 1.7192 3.6441 -3.2681 14 7 1.2271 4.4901 -4.1481 15 14 2.7644 4.2714 -1.8526 16 1 4.1812 4.3657 -2.2872 17 1 2.2830 5.6139 -1.4389 18 1 2.6597 3.3331 -0.7064 19 7 1.5517 -2.1024 -1.2491 20 6 1.8266 -2.9144 -2.2891 21 8 2.5550 -2.5327 -3.1805 22 6 1.2288 -4.2967 -2.3445 23 6 1.7984 -5.0510 -3.5476 24 7 1.1371 -6.3528 -3.6656 25 6 0.4958 -6.8284 -4.7492 26 7 0.0559 -8.0218 -4.4324 27 7 0.4016 -8.2631 -3.2148 28 7 1.0550 -7.2566 -2.7485 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2073 2.1393 34 1 3.9337 0.3058 1.2487 35 1 3.9333 -1.2359 2.1388 36 1 5.1694 -1.4442 -0.0002 37 1 3.7158 -2.4709 0.0001 38 1 3.9332 0.3054 -1.2497 39 1 3.9321 -1.2366 -2.1394 40 1 1.9725 -0.4530 -3.3856 41 1 0.4446 -0.0857 -2.5498 42 1 2.4692 1.7339 -1.7111 43 1 1.4074 5.4392 -4.0618 44 1 1.0305 -2.4326 -0.5006 45 1 1.4735 -4.8353 -1.4289 46 1 0.1459 -4.2206 -2.4428 47 1 1.6252 -4.4719 -4.4546 48 1 2.8695 -5.1987 -3.4099 49 1 0.3703 -6.3256 -5.6967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495328492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:43 Heat of formation + Delta-G solvation = 64.240215 kcal Electronic energy + Delta-G solvation = -30531.304070 eV Core-core repulsion = 26530.335936 eV Total energy + Delta-G solvation = -4000.968135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.16152 -41.94579 -39.53466 -36.99457 -36.49064 -34.87466 -33.71404 -33.51650 -33.35595 -32.50402 -30.78126 -27.99290 -27.00637 -26.37626 -24.80925 -24.43843 -23.59066 -22.92171 -21.87232 -21.51002 -19.82329 -19.77676 -19.03262 -18.06575 -17.78901 -16.95479 -16.81197 -16.52565 -16.24688 -16.13574 -15.48556 -15.34796 -15.25570 -15.06552 -14.99332 -14.61925 -14.37986 -14.10203 -13.81953 -13.58526 -13.38318 -13.26334 -13.17642 -12.97369 -12.84703 -12.75853 -12.57152 -12.47821 -12.30287 -12.19348 -12.11721 -11.88729 -11.85420 -11.77863 -11.42936 -11.34689 -11.19802 -11.11485 -10.92010 -10.48224 -9.94597 -9.25095 -8.03685 -5.36083 0.28278 1.01019 1.23275 1.32636 1.37881 1.44552 1.63973 2.19482 2.45917 3.26377 3.26776 3.45872 3.53760 3.60578 3.75035 3.77936 3.78105 3.90265 3.91402 4.15272 4.20373 4.30321 4.36720 4.45191 4.48706 4.50720 4.53205 4.60678 4.67091 4.71531 4.82653 4.88048 4.92815 4.97504 5.09385 5.13983 5.19325 5.22918 5.25167 5.30239 5.33865 5.42414 5.49837 5.53431 5.66324 5.75841 6.20011 6.61191 7.07012 7.29826 7.57345 7.83136 8.03305 9.18105 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.003055 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.575233 B = 9163.517497 C =10254.809620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.127 4.127 8 C 0.192 3.808 9 C 0.152 3.848 10 N -0.747 5.747 11 C -0.228 4.228 12 H 0.051 0.949 13 C -0.061 4.061 14 N -0.983 5.983 15 Si 0.949 3.051 16 H -0.283 1.283 17 H -0.294 1.294 18 H -0.246 1.246 19 N -0.700 5.700 20 C 0.520 3.480 21 O -0.563 6.563 22 C -0.144 4.144 23 C 0.129 3.871 24 N -0.301 5.301 25 C 0.180 3.820 26 N -0.344 5.344 27 N -0.113 5.113 28 N -0.105 5.105 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.415 0.585 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.141 0.859 48 H 0.118 0.882 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -20.065 10.928 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.077 0.923 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.144 4.144 7 C -0.165 4.165 8 C 0.105 3.895 9 C 0.025 3.975 10 N -0.394 5.394 11 C -0.360 4.360 12 H 0.069 0.931 13 C -0.252 4.252 14 N -0.634 5.634 15 Si 0.776 3.224 16 H -0.209 1.209 17 H -0.220 1.220 18 H -0.171 1.171 19 N -0.354 5.354 20 C 0.306 3.694 21 O -0.442 6.442 22 C -0.185 4.185 23 C 0.009 3.991 24 N -0.103 5.103 25 C -0.118 4.118 26 N -0.193 5.193 27 N -0.107 5.107 28 N -0.092 5.092 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.254 0.746 45 H 0.144 0.856 46 H 0.136 0.864 47 H 0.159 0.841 48 H 0.136 0.864 49 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 1.834 -20.852 10.995 23.645 hybrid contribution 0.475 1.976 -0.244 2.047 sum 2.309 -18.877 10.751 21.846 Atomic orbital electron populations 1.21815 0.94120 1.02508 1.01706 1.21335 0.96765 0.99179 0.93821 0.92295 1.21604 0.95369 1.01226 0.96207 1.21583 0.95837 1.00407 0.98065 1.21437 1.00117 0.99535 0.93287 1.21867 0.94382 1.00472 0.99807 1.20153 0.93591 0.81273 0.94460 1.21045 0.96649 0.83183 0.96601 1.42596 1.61519 1.05136 1.30166 1.18948 1.27906 0.88424 1.00674 0.93130 1.25449 1.02561 0.95867 1.01351 1.69885 1.51140 1.02431 1.39954 0.85500 0.78667 0.77776 0.80442 1.20900 1.22026 1.17061 1.45848 1.55921 1.11013 1.22570 1.20574 0.80415 0.86958 0.81450 1.90759 1.37970 1.76523 1.38921 1.21819 1.03428 0.92120 1.01107 1.22182 0.98351 0.75804 1.02786 1.48927 1.36418 1.15913 1.09055 1.28628 0.93741 0.92173 0.97289 1.74955 1.22283 1.14624 1.07406 1.78630 1.10959 1.17508 1.03595 1.78783 1.17407 0.95911 1.17128 0.91718 0.94494 0.90570 0.89781 0.90601 0.93301 0.89932 0.92051 0.90850 0.93567 0.91551 0.95749 0.95890 0.79944 0.93350 0.74650 0.85642 0.86396 0.84061 0.86392 0.70448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.67 71.98 0.62 -2.62 16 2 C -0.09 -2.18 1.77 -10.80 -0.02 -2.20 16 3 H 0.06 1.80 6.65 -2.39 -0.02 1.79 16 4 C -0.11 -1.70 5.03 30.59 0.15 -1.55 16 5 C -0.12 -2.07 5.92 30.60 0.18 -1.89 16 6 C -0.11 -2.06 5.77 30.59 0.18 -1.88 16 7 C -0.13 -3.47 4.44 30.57 0.14 -3.33 16 8 C 0.19 5.00 0.11 3.59 0.00 5.00 16 9 C 0.15 5.73 4.42 86.38 0.38 6.11 16 10 N -0.75 -34.40 4.80 -343.45 -1.65 -36.04 16 11 C -0.23 -13.07 10.47 84.03 0.88 -12.19 16 12 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 13 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 14 N -0.98 -63.12 13.97 21.65 0.30 -62.82 16 15 Si 0.95 45.03 27.87 68.60 1.91 46.94 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.25 -10.28 6.34 99.48 0.63 -9.65 16 19 N -0.70 -12.25 3.73 -423.01 -1.58 -13.83 16 20 C 0.52 9.28 7.23 87.66 0.63 9.91 16 21 O -0.56 -14.88 12.19 -3.03 -0.04 -14.92 16 22 C -0.14 -1.37 5.84 29.85 0.17 -1.20 16 23 C 0.13 1.20 5.87 86.38 0.51 1.71 16 24 N -0.30 -3.95 3.44 -351.85 -1.21 -5.16 16 25 C 0.18 2.18 12.79 180.27 2.31 4.48 16 26 N -0.34 -7.26 12.36 -60.30 -0.75 -8.01 16 27 N -0.11 -2.74 13.43 37.01 0.50 -2.24 16 28 N -0.11 -2.08 13.08 37.02 0.48 -1.59 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 1.11 6.56 -2.39 -0.02 1.09 16 31 H 0.08 1.22 6.92 -2.39 -0.02 1.20 16 32 H 0.08 0.92 6.80 -2.38 -0.02 0.91 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.20 7.60 -2.39 -0.02 1.18 16 38 H 0.05 1.48 7.11 -2.38 -0.02 1.46 16 39 H 0.07 2.08 6.21 -2.39 -0.01 2.06 16 40 H 0.02 1.04 6.31 -2.39 -0.02 1.03 16 41 H 0.02 0.90 6.74 -2.39 -0.02 0.88 16 42 H 0.37 16.07 3.18 -92.70 -0.29 15.78 16 43 H 0.26 15.73 8.31 -92.71 -0.77 14.95 16 44 H 0.41 4.56 6.17 -92.71 -0.57 3.98 16 45 H 0.13 0.86 8.14 -2.38 -0.02 0.85 16 46 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.14 1.01 7.83 -2.39 -0.02 0.99 16 48 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.28 0.33 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -81.47 376.89 4.62 -76.85 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.04 Total: 23.59 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 6.60 Total: -2.77 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -3.90 Total: -129.70 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.04 Total: -14.92 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.91 Total: 46.94 kcal Total: -81.47 4.62 -76.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.095 kcal (2) G-P(sol) polarization free energy of solvation -81.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds