Wall clock time and date at job start Tue Mar 31 2020 21:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47226 * 2 1 4 4 C 1.53004 * 109.46957 * 240.00077 * 2 1 3 5 5 C 1.53002 * 109.47090 * 300.00088 * 4 2 1 6 6 C 1.53001 * 109.47418 * 300.00095 * 5 4 2 7 7 C 1.53004 * 109.47068 * 59.99891 * 6 5 4 8 8 C 1.53001 * 109.46908 * 120.00376 * 2 1 3 9 9 C 1.53004 * 109.47068 * 299.99633 * 8 2 1 10 10 N 1.46499 * 109.47118 * 299.53675 * 9 8 2 11 11 C 1.36936 * 119.99854 * 174.94439 * 10 9 8 12 12 H 1.08004 * 120.00016 * 4.65711 * 11 10 9 13 13 C 1.38806 * 119.99925 * 184.37272 * 11 10 9 14 14 N 1.31622 * 119.99966 * 173.98288 * 13 11 10 15 15 Si 1.86804 * 120.00263 * 353.99115 * 13 11 10 16 16 H 1.48496 * 109.47178 * 93.55910 * 15 13 11 17 17 H 1.48493 * 109.47280 * 213.56542 * 15 13 11 18 18 H 1.48505 * 109.46748 * 333.56386 * 15 13 11 19 19 N 1.46494 * 109.46997 * 179.97438 * 8 2 1 20 20 C 1.34778 * 120.00282 * 178.04198 * 19 8 2 21 21 O 1.21290 * 119.99432 * 5.14790 * 20 19 8 22 22 C 1.50689 * 120.00443 * 185.15203 * 20 19 8 23 23 C 1.52999 * 109.47310 * 185.28644 * 22 20 19 24 24 N 1.46508 * 109.47303 * 184.57102 * 23 22 20 25 25 C 1.34588 * 126.43928 * 124.71478 * 24 23 22 26 26 N 1.31075 * 106.68004 * 179.87670 * 25 24 23 27 27 N 1.28845 * 107.98805 * 0.38373 * 26 25 24 28 28 N 1.28736 * 109.39462 * 359.75122 * 27 26 25 29 29 H 1.08993 * 109.47116 * 300.00100 * 1 2 3 30 30 H 1.09000 * 109.46868 * 59.99974 * 1 2 3 31 31 H 1.09002 * 109.47428 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47373 * 60.00259 * 4 2 1 33 33 H 1.08998 * 109.46818 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47165 * 60.00366 * 5 4 2 35 35 H 1.09002 * 109.47165 * 179.97438 * 5 4 2 36 36 H 1.08990 * 109.47484 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.46840 * 300.00539 * 6 5 4 38 38 H 1.09000 * 109.47373 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46965 * 59.99848 * 7 6 5 40 40 H 1.08999 * 109.46970 * 179.52553 * 9 8 2 41 41 H 1.09004 * 109.46872 * 59.53051 * 9 8 2 42 42 H 0.96994 * 119.99782 * 354.93238 * 10 9 8 43 43 H 0.97003 * 119.99699 * 179.97438 * 14 13 11 44 44 H 0.97000 * 120.00379 * 358.04004 * 19 8 2 45 45 H 1.09000 * 109.47513 * 305.28498 * 22 20 19 46 46 H 1.09006 * 109.47435 * 65.28727 * 22 20 19 47 47 H 1.08999 * 109.47504 * 304.56451 * 23 22 20 48 48 H 1.08994 * 109.47391 * 64.56937 * 23 22 20 49 49 H 1.08001 * 126.66354 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0399 -2.8851 -0.0001 7 6 1.5299 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 6 1.5300 -0.0001 2.4985 10 7 2.0275 1.3778 2.5042 11 6 1.6157 2.2505 3.4758 12 1 0.9841 1.9039 4.2804 13 6 2.0147 3.5791 3.4297 14 7 1.5254 4.4435 4.2933 15 14 3.2460 4.1406 2.1419 16 1 2.5194 4.6548 0.9533 17 1 4.0964 5.2187 2.7070 18 1 4.1009 2.9942 1.7416 19 7 3.5049 -0.7219 1.2489 20 6 4.1789 -1.2708 2.2790 21 8 3.5760 -1.8465 3.1600 22 6 5.6813 -1.1692 2.3361 23 6 6.2025 -1.9802 3.5242 24 7 7.6506 -1.7936 3.6452 25 6 8.3134 -1.3683 4.7366 26 7 9.5851 -1.3462 4.4196 27 7 9.6966 -1.7298 3.1947 28 7 8.5295 -2.0010 2.7237 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7216 -1.2490 34 1 0.4400 -2.1637 -1.2493 35 1 1.8929 -2.6775 -2.1395 36 1 1.6770 -3.9128 -0.0003 37 1 3.1300 -2.8851 -0.0001 38 1 1.8936 -2.6774 2.1392 39 1 0.4399 -2.1638 1.2492 40 1 1.8864 -0.5189 3.3884 41 1 0.4400 0.0073 2.4943 42 1 2.6488 1.6719 1.8198 43 1 1.8046 5.3720 4.2613 44 1 3.9900 -0.3273 0.5074 45 1 6.1074 -1.5621 1.4131 46 1 5.9706 -0.1249 2.4542 47 1 5.7150 -1.6405 4.4380 48 1 5.9841 -3.0364 3.3669 49 1 7.8816 -1.0999 5.6894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495328493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:49 Heat of formation + Delta-G solvation = 88.758375 kcal Electronic energy + Delta-G solvation = -30888.248366 eV Core-core repulsion = 26888.343419 eV Total energy + Delta-G solvation = -3999.904947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.34153 -40.91945 -38.62006 -36.20450 -34.96454 -33.59954 -32.70298 -32.11927 -31.90224 -31.08451 -30.01899 -27.03455 -25.87603 -25.18557 -23.99399 -22.98258 -22.71467 -22.08327 -20.82546 -20.09509 -18.56864 -18.22421 -17.77165 -17.25635 -16.84827 -16.09823 -15.99037 -15.55644 -15.45056 -14.63316 -14.49021 -14.41167 -13.90341 -13.81530 -13.53457 -13.23397 -13.01898 -12.94991 -12.82213 -12.59018 -12.35809 -12.16989 -11.98545 -11.96204 -11.75400 -11.63680 -11.37566 -11.34822 -11.10164 -11.07875 -11.01855 -10.86006 -10.52357 -10.51732 -10.32864 -10.11992 -10.00561 -9.67560 -9.50304 -8.88969 -8.82203 -7.23879 -5.82600 -3.16286 1.05605 1.73046 2.08015 2.62178 3.16741 3.24812 3.27796 3.36863 3.96322 4.08067 4.29241 4.51021 4.52873 4.56774 4.66051 4.70745 4.76168 4.92751 5.07885 5.10289 5.11489 5.26999 5.31637 5.33978 5.37260 5.46884 5.51512 5.53785 5.60722 5.66750 5.70958 5.79650 5.90392 5.93739 5.96712 6.01909 6.07032 6.12898 6.24679 6.33800 6.38174 6.44643 6.52313 6.75874 6.88496 7.54875 7.96006 8.22787 8.36751 8.41539 9.16328 9.88502 10.09297 11.36094 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.004543 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.413254 B = 6162.360067 C = 8461.269405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.129 4.129 8 C 0.178 3.822 9 C 0.144 3.856 10 N -0.750 5.750 11 C -0.237 4.237 12 H 0.089 0.911 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.880 3.120 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.282 1.282 19 N -0.710 5.710 20 C 0.530 3.470 21 O -0.531 6.531 22 C -0.160 4.160 23 C 0.132 3.868 24 N -0.307 5.307 25 C 0.166 3.834 26 N -0.311 5.311 27 N -0.080 5.080 28 N -0.095 5.095 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.357 0.643 43 H 0.259 0.741 44 H 0.396 0.604 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.129 0.871 48 H 0.113 0.887 49 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -15.668 -8.616 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.154 4.154 5 C -0.158 4.158 6 C -0.150 4.150 7 C -0.168 4.168 8 C 0.093 3.907 9 C 0.017 3.983 10 N -0.395 5.395 11 C -0.367 4.367 12 H 0.107 0.893 13 C -0.191 4.191 14 N -0.581 5.581 15 Si 0.711 3.289 16 H -0.212 1.212 17 H -0.218 1.218 18 H -0.208 1.208 19 N -0.361 5.361 20 C 0.315 3.685 21 O -0.409 6.409 22 C -0.201 4.201 23 C 0.011 3.989 24 N -0.109 5.109 25 C -0.133 4.133 26 N -0.159 5.159 27 N -0.074 5.074 28 N -0.082 5.082 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.190 0.810 43 H 0.069 0.931 44 H 0.230 0.770 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.147 0.853 48 H 0.131 0.869 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.537 -16.148 -8.638 18.867 hybrid contribution 0.276 1.107 -0.669 1.322 sum 4.813 -15.042 -9.307 18.331 Atomic orbital electron populations 1.21926 0.93857 1.01845 1.02792 1.21264 0.97351 0.99521 0.92802 0.90311 1.21615 1.00069 0.95893 0.97796 1.21576 1.01137 0.95456 0.97592 1.21445 1.00569 0.98456 0.94530 1.21943 1.01026 0.94756 0.99055 1.20676 0.78178 0.95399 0.96476 1.21119 0.97080 0.85434 0.94678 1.42594 1.55115 1.08077 1.33748 1.19038 1.25473 0.89117 1.03109 0.89326 1.24632 1.00333 0.95718 0.98376 1.69710 1.46588 1.02981 1.38790 0.86605 0.82174 0.78011 0.82138 1.21154 1.21806 1.20804 1.45964 1.07421 1.60011 1.22686 1.19812 0.88266 0.78488 0.81916 1.90679 1.69768 1.42562 1.37843 1.21918 0.94724 1.03378 1.00063 1.22034 0.70770 1.03631 1.02511 1.48834 1.10870 1.42330 1.08837 1.27833 0.88945 1.00216 0.96319 1.75015 1.15249 1.18220 1.07418 1.78628 1.13426 1.12890 1.02490 1.78836 0.94419 1.18650 1.16254 0.90923 0.92816 0.92298 0.91847 0.92479 0.91566 0.92576 0.92428 0.92419 0.89590 0.90932 0.93521 0.94216 0.81032 0.93115 0.76965 0.87494 0.87652 0.85339 0.86871 0.74758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.15 37.16 0.30 -1.51 16 2 C -0.09 -1.13 2.14 -90.61 -0.19 -1.32 16 3 H 0.08 1.16 7.00 -51.93 -0.36 0.79 16 4 C -0.12 -1.13 5.28 -26.73 -0.14 -1.27 16 5 C -0.12 -1.08 5.65 -26.73 -0.15 -1.23 16 6 C -0.11 -1.10 5.77 -26.73 -0.15 -1.25 16 7 C -0.13 -1.54 4.27 -26.73 -0.11 -1.65 16 8 C 0.18 2.38 0.09 -131.82 -0.01 2.37 16 9 C 0.14 2.63 4.59 -4.04 -0.02 2.61 16 10 N -0.75 -16.39 4.93 -59.91 -0.30 -16.68 16 11 C -0.24 -6.43 10.46 -15.06 -0.16 -6.59 16 12 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 13 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 14 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 15 Si 0.88 21.24 27.74 -169.99 -4.72 16.52 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.28 -6.23 6.53 56.52 0.37 -5.86 16 19 N -0.71 -8.54 3.66 -47.61 -0.17 -8.72 16 20 C 0.53 6.48 7.23 -10.99 -0.08 6.40 16 21 O -0.53 -7.83 12.13 5.55 0.07 -7.76 16 22 C -0.16 -1.49 5.84 -27.89 -0.16 -1.65 16 23 C 0.13 1.08 5.87 -4.04 -0.02 1.06 16 24 N -0.31 -3.05 3.44 -62.55 -0.22 -3.27 16 25 C 0.17 1.57 12.79 -90.40 -1.16 0.42 16 26 N -0.31 -4.07 12.36 29.59 0.37 -3.70 16 27 N -0.08 -1.15 13.43 60.35 0.81 -0.34 16 28 N -0.10 -1.20 13.08 60.35 0.79 -0.41 16 29 H 0.07 1.08 6.42 -51.93 -0.33 0.74 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 6.82 -51.93 -0.35 0.16 16 34 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 38 H 0.09 1.17 6.14 -51.93 -0.32 0.85 16 39 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 40 H 0.05 0.95 6.22 -51.93 -0.32 0.63 16 41 H 0.04 0.75 6.40 -51.93 -0.33 0.42 16 42 H 0.36 7.55 4.36 -40.82 -0.18 7.37 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.40 4.04 7.26 -40.82 -0.30 3.75 16 45 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.13 0.96 7.83 -51.93 -0.41 0.56 16 48 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.24 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -34.33 374.24 -6.30 -40.63 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.19 Total: 9.52 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.16 Total: -3.58 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 2.06 Total: -60.98 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.07 Total: -7.76 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.72 Total: 16.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.33 -6.30 -40.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.388 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds