Wall clock time and date at job start Tue Mar 31 2020 21:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47226 * 2 1 4 4 C 1.53004 * 109.46957 * 240.00077 * 2 1 3 5 5 C 1.53002 * 109.47090 * 300.00088 * 4 2 1 6 6 C 1.53001 * 109.47418 * 300.00095 * 5 4 2 7 7 C 1.53004 * 109.47068 * 59.99891 * 6 5 4 8 8 C 1.53001 * 109.46908 * 120.00376 * 2 1 3 9 9 C 1.53004 * 109.47068 * 299.99633 * 8 2 1 10 10 N 1.46499 * 109.47118 * 299.53675 * 9 8 2 11 11 C 1.36936 * 119.99854 * 174.94439 * 10 9 8 12 12 H 1.08004 * 120.00016 * 4.65711 * 11 10 9 13 13 C 1.38806 * 119.99925 * 184.37272 * 11 10 9 14 14 N 1.31622 * 119.99966 * 173.98288 * 13 11 10 15 15 Si 1.86804 * 120.00263 * 353.99115 * 13 11 10 16 16 H 1.48496 * 109.47178 * 93.55910 * 15 13 11 17 17 H 1.48493 * 109.47280 * 213.56542 * 15 13 11 18 18 H 1.48505 * 109.46748 * 333.56386 * 15 13 11 19 19 N 1.46494 * 109.46997 * 179.97438 * 8 2 1 20 20 C 1.34778 * 120.00282 * 178.04198 * 19 8 2 21 21 O 1.21290 * 119.99432 * 5.14790 * 20 19 8 22 22 C 1.50689 * 120.00443 * 185.15203 * 20 19 8 23 23 C 1.52999 * 109.47310 * 185.28644 * 22 20 19 24 24 N 1.46508 * 109.47303 * 184.57102 * 23 22 20 25 25 C 1.34588 * 126.43928 * 124.71478 * 24 23 22 26 26 N 1.31075 * 106.68004 * 179.87670 * 25 24 23 27 27 N 1.28845 * 107.98805 * 0.38373 * 26 25 24 28 28 N 1.28736 * 109.39462 * 359.75122 * 27 26 25 29 29 H 1.08993 * 109.47116 * 300.00100 * 1 2 3 30 30 H 1.09000 * 109.46868 * 59.99974 * 1 2 3 31 31 H 1.09002 * 109.47428 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47373 * 60.00259 * 4 2 1 33 33 H 1.08998 * 109.46818 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47165 * 60.00366 * 5 4 2 35 35 H 1.09002 * 109.47165 * 179.97438 * 5 4 2 36 36 H 1.08990 * 109.47484 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.46840 * 300.00539 * 6 5 4 38 38 H 1.09000 * 109.47373 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46965 * 59.99848 * 7 6 5 40 40 H 1.08999 * 109.46970 * 179.52553 * 9 8 2 41 41 H 1.09004 * 109.46872 * 59.53051 * 9 8 2 42 42 H 0.96994 * 119.99782 * 354.93238 * 10 9 8 43 43 H 0.97003 * 119.99699 * 179.97438 * 14 13 11 44 44 H 0.97000 * 120.00379 * 358.04004 * 19 8 2 45 45 H 1.09000 * 109.47513 * 305.28498 * 22 20 19 46 46 H 1.09006 * 109.47435 * 65.28727 * 22 20 19 47 47 H 1.08999 * 109.47504 * 304.56451 * 23 22 20 48 48 H 1.08994 * 109.47391 * 64.56937 * 23 22 20 49 49 H 1.08001 * 126.66354 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0399 -2.8851 -0.0001 7 6 1.5299 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 6 1.5300 -0.0001 2.4985 10 7 2.0275 1.3778 2.5042 11 6 1.6157 2.2505 3.4758 12 1 0.9841 1.9039 4.2804 13 6 2.0147 3.5791 3.4297 14 7 1.5254 4.4435 4.2933 15 14 3.2460 4.1406 2.1419 16 1 2.5194 4.6548 0.9533 17 1 4.0964 5.2187 2.7070 18 1 4.1009 2.9942 1.7416 19 7 3.5049 -0.7219 1.2489 20 6 4.1789 -1.2708 2.2790 21 8 3.5760 -1.8465 3.1600 22 6 5.6813 -1.1692 2.3361 23 6 6.2025 -1.9802 3.5242 24 7 7.6506 -1.7936 3.6452 25 6 8.3134 -1.3683 4.7366 26 7 9.5851 -1.3462 4.4196 27 7 9.6966 -1.7298 3.1947 28 7 8.5295 -2.0010 2.7237 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7216 -1.2490 34 1 0.4400 -2.1637 -1.2493 35 1 1.8929 -2.6775 -2.1395 36 1 1.6770 -3.9128 -0.0003 37 1 3.1300 -2.8851 -0.0001 38 1 1.8936 -2.6774 2.1392 39 1 0.4399 -2.1638 1.2492 40 1 1.8864 -0.5189 3.3884 41 1 0.4400 0.0073 2.4943 42 1 2.6488 1.6719 1.8198 43 1 1.8046 5.3720 4.2613 44 1 3.9900 -0.3273 0.5074 45 1 6.1074 -1.5621 1.4131 46 1 5.9706 -0.1249 2.4542 47 1 5.7150 -1.6405 4.4380 48 1 5.9841 -3.0364 3.3669 49 1 7.8816 -1.0999 5.6894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495328493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:48 Heat of formation + Delta-G solvation = 65.367555 kcal Electronic energy + Delta-G solvation = -30889.262668 eV Core-core repulsion = 26888.343419 eV Total energy + Delta-G solvation = -4000.919249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -45.19826 -41.94564 -39.57862 -37.04315 -36.56156 -34.80601 -33.67657 -33.51329 -32.78795 -32.40935 -31.18715 -28.10906 -27.11605 -26.24497 -24.83704 -24.34802 -23.77845 -23.09079 -21.97855 -21.08276 -19.86711 -19.43235 -19.01669 -18.08244 -17.76049 -17.01118 -16.83758 -16.64319 -16.55567 -16.35387 -15.60081 -15.37682 -15.23564 -14.83713 -14.69802 -14.44373 -14.14605 -14.08235 -13.85334 -13.70474 -13.50842 -13.26898 -13.18727 -12.96018 -12.84617 -12.82730 -12.54183 -12.40705 -12.32657 -12.23204 -12.06519 -11.93255 -11.88862 -11.81946 -11.38129 -11.33799 -11.14070 -10.97522 -10.89560 -10.45119 -9.90934 -9.22718 -8.02803 -5.33982 0.24377 0.98144 1.19409 1.30397 1.36299 1.44038 1.65832 2.23932 2.45859 3.22621 3.27486 3.44372 3.53337 3.57575 3.68853 3.79762 3.85165 3.86676 3.90915 4.22257 4.25412 4.32841 4.36389 4.45191 4.47635 4.51984 4.56547 4.62918 4.70469 4.77782 4.82069 4.86011 4.89262 4.97344 5.13311 5.16322 5.19152 5.21010 5.25825 5.30386 5.41821 5.46456 5.51934 5.60985 5.73413 5.77517 6.20458 6.60105 7.08782 7.28457 7.53413 7.84413 8.06763 9.19233 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.004543 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.413254 B = 6162.360067 C = 8461.269405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.058 0.942 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.106 4.106 7 C -0.124 4.124 8 C 0.188 3.812 9 C 0.145 3.855 10 N -0.743 5.743 11 C -0.226 4.226 12 H 0.048 0.952 13 C -0.061 4.061 14 N -0.984 5.984 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.301 1.301 18 H -0.247 1.247 19 N -0.708 5.708 20 C 0.526 3.474 21 O -0.559 6.559 22 C -0.151 4.151 23 C 0.133 3.867 24 N -0.302 5.302 25 C 0.178 3.822 26 N -0.342 5.342 27 N -0.112 5.112 28 N -0.104 5.104 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.029 0.971 42 H 0.365 0.635 43 H 0.256 0.744 44 H 0.408 0.592 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.137 0.863 48 H 0.126 0.874 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 -17.065 -11.200 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.143 4.143 7 C -0.162 4.162 8 C 0.102 3.898 9 C 0.018 3.982 10 N -0.388 5.388 11 C -0.357 4.357 12 H 0.066 0.934 13 C -0.252 4.252 14 N -0.635 5.635 15 Si 0.777 3.223 16 H -0.205 1.205 17 H -0.228 1.228 18 H -0.172 1.172 19 N -0.360 5.360 20 C 0.313 3.687 21 O -0.438 6.438 22 C -0.191 4.191 23 C 0.013 3.987 24 N -0.104 5.104 25 C -0.120 4.120 26 N -0.191 5.191 27 N -0.106 5.106 28 N -0.091 5.091 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.245 0.755 45 H 0.144 0.856 46 H 0.120 0.880 47 H 0.155 0.845 48 H 0.144 0.856 49 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 5.608 -17.597 -11.267 21.635 hybrid contribution -0.216 1.489 0.267 1.528 sum 5.392 -16.109 -11.000 20.238 Atomic orbital electron populations 1.21906 0.94079 1.02607 1.01691 1.21242 0.97205 0.98625 0.93745 0.92342 1.21591 1.00850 0.96052 0.96270 1.21564 1.01255 0.94822 0.97740 1.21403 1.00709 0.98731 0.93482 1.21866 1.00962 0.93587 0.99807 1.20433 0.79182 0.95795 0.94356 1.21173 0.96480 0.83773 0.96778 1.42454 1.55074 1.08798 1.32512 1.18954 1.23963 0.89975 1.02813 0.93388 1.25430 1.02862 0.95744 1.01211 1.69907 1.48754 1.03275 1.41571 0.85477 0.79645 0.78113 0.79087 1.20455 1.22776 1.17153 1.45931 1.06794 1.59993 1.23268 1.20298 0.89427 0.77707 0.81303 1.90680 1.70656 1.43701 1.38770 1.21846 0.92325 1.03457 1.01503 1.22158 0.69684 1.04301 1.02581 1.48926 1.11093 1.41749 1.08584 1.28609 0.87975 0.98120 0.97265 1.74949 1.17315 1.19507 1.07319 1.78605 1.14381 1.14278 1.03348 1.78759 0.94466 1.18867 1.17039 0.94289 0.91602 0.90656 0.90726 0.91185 0.91439 0.90687 0.91402 0.92094 0.91415 0.91004 0.95644 0.95319 0.80148 0.93494 0.75546 0.85588 0.88002 0.84457 0.85627 0.70643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.15 71.98 0.59 -2.82 16 2 C -0.09 -2.04 2.14 -10.79 -0.02 -2.06 16 3 H 0.06 1.59 7.00 -2.39 -0.02 1.57 16 4 C -0.11 -1.73 5.28 30.60 0.16 -1.56 16 5 C -0.12 -1.62 5.65 30.60 0.17 -1.45 16 6 C -0.11 -1.72 5.77 30.60 0.18 -1.54 16 7 C -0.12 -2.76 4.27 30.60 0.13 -2.62 16 8 C 0.19 4.79 0.09 3.61 0.00 4.79 16 9 C 0.14 5.34 4.59 86.38 0.40 5.74 16 10 N -0.74 -32.46 4.93 -343.45 -1.69 -34.15 16 11 C -0.23 -12.58 10.46 84.03 0.88 -11.70 16 12 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 13 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 14 N -0.98 -62.30 13.97 21.65 0.30 -62.00 16 15 Si 0.95 43.53 27.74 68.60 1.90 45.43 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 18 H -0.25 -9.78 6.53 99.48 0.65 -9.13 16 19 N -0.71 -15.41 3.66 -422.93 -1.55 -16.96 16 20 C 0.53 11.83 7.23 87.65 0.63 12.46 16 21 O -0.56 -15.94 12.13 -3.06 -0.04 -15.97 16 22 C -0.15 -2.40 5.84 29.84 0.17 -2.22 16 23 C 0.13 1.85 5.87 86.38 0.51 2.36 16 24 N -0.30 -5.33 3.44 -351.81 -1.21 -6.54 16 25 C 0.18 3.00 12.79 180.27 2.31 5.30 16 26 N -0.34 -8.59 12.36 -60.30 -0.75 -9.33 16 27 N -0.11 -3.13 13.43 37.01 0.50 -2.64 16 28 N -0.10 -2.46 13.08 37.02 0.48 -1.98 16 29 H 0.04 1.16 6.42 -2.39 -0.02 1.15 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.49 4.81 -2.39 -0.01 1.48 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 0.94 6.82 -2.39 -0.02 0.92 16 34 H 0.07 0.95 6.43 -2.39 -0.02 0.94 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.98 7.60 -2.39 -0.02 0.96 16 38 H 0.07 1.79 6.14 -2.39 -0.01 1.78 16 39 H 0.07 1.59 6.43 -2.38 -0.02 1.57 16 40 H 0.03 1.07 6.22 -2.39 -0.01 1.05 16 41 H 0.03 1.13 6.40 -2.38 -0.02 1.11 16 42 H 0.36 14.84 4.36 -92.71 -0.40 14.44 16 43 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.41 6.95 7.26 -92.71 -0.67 6.28 16 45 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.14 1.73 7.83 -2.39 -0.02 1.71 16 48 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.28 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -77.99 374.24 4.39 -73.61 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.14 Total: 28.92 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.57 Total: 1.62 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -3.91 Total: -133.60 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.04 Total: -15.97 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.90 Total: 45.43 kcal Total: -77.99 4.39 -73.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.974 kcal (2) G-P(sol) polarization free energy of solvation -77.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds