Wall clock time and date at job start Tue Mar 31 2020 21:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47383 * 2 1 4 4 C 1.53002 * 109.46804 * 239.99645 * 2 1 3 5 5 C 1.53003 * 109.47169 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46923 * 60.00395 * 5 4 2 7 7 C 1.53004 * 109.46830 * 300.00175 * 6 5 4 8 8 C 1.52994 * 109.47574 * 60.00030 * 7 6 5 9 9 C 1.52994 * 109.47477 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47302 * 294.14203 * 9 8 7 11 11 C 1.36943 * 119.99885 * 183.54975 * 10 9 8 12 12 H 1.07994 * 120.00188 * 359.97438 * 11 10 9 13 13 C 1.38821 * 119.99760 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99917 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 119.99926 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47387 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47049 * 119.99648 * 15 13 11 18 18 H 1.48498 * 109.47359 * 239.99943 * 15 13 11 19 19 N 1.46502 * 109.46936 * 59.99627 * 8 7 6 20 20 C 1.34777 * 119.99572 * 171.16614 * 19 8 7 21 21 O 1.21275 * 120.00523 * 354.00209 * 20 19 8 22 22 C 1.50705 * 119.99691 * 174.00424 * 20 19 8 23 23 C 1.52995 * 109.47113 * 179.97438 * 22 20 19 24 24 N 1.46504 * 109.47337 * 180.02562 * 23 22 20 25 25 C 1.34593 * 126.44100 * 124.70984 * 24 23 22 26 26 N 1.31069 * 106.67907 * 179.87641 * 25 24 23 27 27 N 1.28840 * 107.99175 * 0.38606 * 26 25 24 28 28 N 1.28738 * 109.39561 * 359.75467 * 27 26 25 29 29 H 1.09004 * 109.46871 * 291.99170 * 1 2 3 30 30 H 1.08999 * 109.47028 * 51.98654 * 1 2 3 31 31 H 1.08992 * 109.47256 * 171.99218 * 1 2 3 32 32 H 1.08994 * 109.47441 * 300.00320 * 4 2 1 33 33 H 1.09002 * 109.46724 * 60.00640 * 4 2 1 34 34 H 1.08998 * 109.46986 * 300.00913 * 5 4 2 35 35 H 1.08999 * 109.47254 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47262 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46974 * 59.99679 * 6 5 4 38 38 H 1.09001 * 109.46936 * 299.99527 * 7 6 5 39 39 H 1.09003 * 109.46588 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.46672 * 54.14041 * 9 8 7 41 41 H 1.09000 * 109.47703 * 174.13564 * 9 8 7 42 42 H 0.96997 * 120.00252 * 3.54641 * 10 9 8 43 43 H 0.97003 * 119.99988 * 179.97438 * 14 13 11 44 44 H 0.96999 * 120.00014 * 351.16721 * 19 8 7 45 45 H 1.09000 * 109.47021 * 299.99582 * 22 20 19 46 46 H 1.09000 * 109.47257 * 59.99668 * 22 20 19 47 47 H 1.09001 * 109.47366 * 299.99523 * 23 22 20 48 48 H 1.09000 * 109.47292 * 59.99737 * 23 22 20 49 49 H 1.08003 * 126.65885 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7220 -1.2490 6 6 4.0795 -1.4436 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0395 -0.7217 1.2493 9 6 1.5295 -0.0010 2.4988 10 7 1.8988 -0.7689 3.6904 11 6 1.4842 -0.3542 4.9279 12 1 0.8854 0.5393 5.0254 13 6 1.8337 -1.0822 6.0570 14 7 2.5638 -2.1707 5.9382 15 14 1.2688 -0.5161 7.7451 16 1 0.4671 0.7264 7.6079 17 1 0.4360 -1.5754 8.3694 18 1 2.4534 -0.2496 8.5999 19 7 1.5506 -2.1027 1.2489 20 6 0.2384 -2.3530 1.4279 21 8 -0.5207 -1.4464 1.6973 22 6 -0.2855 -3.7597 1.2934 23 6 -1.7947 -3.7679 1.5441 24 7 -2.3040 -5.1354 1.4139 25 6 -3.0064 -5.8181 2.3369 26 7 -3.2637 -6.9945 1.8195 27 7 -2.7393 -7.0353 0.6433 28 7 -2.1586 -5.9135 0.3951 29 1 -0.3633 0.3849 0.9529 30 1 -0.3633 0.6329 -0.8097 31 1 -0.3633 -1.0176 -0.1431 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9337 0.3056 -1.2487 35 1 3.9333 -1.2355 -2.1392 36 1 5.1695 -1.4437 0.0007 37 1 3.7156 -2.4711 0.0000 38 1 3.9333 0.3052 1.2497 39 1 3.9328 -1.2362 2.1395 40 1 1.9764 0.9918 2.5534 41 1 0.4447 0.0914 2.4477 42 1 2.4369 -1.5712 3.6029 43 1 2.8084 -2.6793 6.7272 44 1 2.1713 -2.8369 1.1199 45 1 -0.0817 -4.1287 0.2882 46 1 0.2072 -4.4022 2.0231 47 1 -1.9981 -3.3991 2.5494 48 1 -2.2877 -3.1252 0.8146 49 1 -3.3028 -5.4643 3.3134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495328494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:54 Heat of formation + Delta-G solvation = 101.377326 kcal Electronic energy + Delta-G solvation = -31095.167499 eV Core-core repulsion = 27095.809751 eV Total energy + Delta-G solvation = -3999.357749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.24948 -40.93053 -38.15676 -36.07274 -34.69241 -33.34706 -32.74109 -32.49680 -31.72867 -30.90599 -29.41877 -26.53813 -25.81778 -25.05607 -23.90096 -23.05479 -22.66185 -21.26801 -20.78479 -20.40356 -18.92303 -18.10140 -17.26195 -17.18614 -16.64783 -16.04960 -15.88573 -15.48095 -15.00357 -14.40246 -14.37132 -14.12072 -13.77183 -13.68775 -13.55071 -13.18512 -13.11264 -12.88992 -12.54186 -12.33970 -12.26002 -11.92235 -11.90302 -11.69384 -11.48056 -11.41880 -11.27110 -11.11631 -10.96356 -10.90801 -10.83275 -10.81648 -10.43385 -10.41738 -10.13771 -10.04789 -9.73684 -9.66768 -9.35617 -8.75428 -8.42521 -6.85280 -5.78384 -3.03547 1.15281 1.84587 2.16199 2.89014 3.38257 3.40677 3.47422 3.48670 4.10162 4.17479 4.44700 4.57385 4.68902 4.72254 4.79489 4.82377 4.87353 5.08678 5.17405 5.20570 5.24415 5.38500 5.47222 5.50810 5.53750 5.57222 5.58762 5.65217 5.67056 5.73440 5.91291 6.00683 6.03939 6.05809 6.15283 6.18275 6.21172 6.30600 6.35203 6.41181 6.57599 6.60984 6.69509 6.98257 7.15343 7.71041 7.80700 8.41647 8.50335 8.51353 9.53152 10.12333 10.47519 11.44915 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.004889 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.142811 B = 5725.954987 C = 8613.668160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.121 4.121 8 C 0.181 3.819 9 C 0.133 3.867 10 N -0.723 5.723 11 C -0.224 4.224 12 H 0.068 0.932 13 C -0.017 4.017 14 N -0.938 5.938 15 Si 0.902 3.098 16 H -0.281 1.281 17 H -0.294 1.294 18 H -0.293 1.293 19 N -0.705 5.705 20 C 0.525 3.475 21 O -0.514 6.514 22 C -0.158 4.158 23 C 0.131 3.869 24 N -0.304 5.304 25 C 0.165 3.835 26 N -0.312 5.312 27 N -0.082 5.082 28 N -0.095 5.095 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.013 0.987 41 H 0.067 0.933 42 H 0.380 0.620 43 H 0.252 0.748 44 H 0.395 0.605 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.127 0.873 48 H 0.114 0.886 49 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -0.364 -14.206 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.159 4.159 8 C 0.096 3.904 9 C 0.005 3.995 10 N -0.367 5.367 11 C -0.355 4.355 12 H 0.086 0.914 13 C -0.212 4.212 14 N -0.588 5.588 15 Si 0.734 3.266 16 H -0.207 1.207 17 H -0.221 1.221 18 H -0.221 1.221 19 N -0.356 5.356 20 C 0.310 3.690 21 O -0.391 6.391 22 C -0.199 4.199 23 C 0.010 3.990 24 N -0.106 5.106 25 C -0.134 4.134 26 N -0.161 5.161 27 N -0.076 5.076 28 N -0.082 5.082 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.030 0.970 41 H 0.085 0.915 42 H 0.214 0.786 43 H 0.062 0.938 44 H 0.230 0.770 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.145 0.855 48 H 0.132 0.868 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.200 -0.564 -14.912 15.262 hybrid contribution 0.425 0.450 1.750 1.857 sum -2.775 -0.114 -13.162 13.452 Atomic orbital electron populations 1.22391 0.93948 1.01658 1.01929 1.21492 0.96841 0.99131 0.93792 0.90850 1.21557 0.95129 1.00704 0.97397 1.21547 0.95911 1.00644 0.97544 1.21563 1.00245 0.99186 0.94731 1.21797 0.93699 1.02071 0.98291 1.20607 0.93201 0.81150 0.95480 1.21330 1.00138 0.93022 0.84971 1.42198 1.63353 1.30214 1.00978 1.19262 1.25558 1.06613 0.84102 0.91411 1.24648 1.01208 0.97803 0.97569 1.69649 1.42762 1.18171 1.28199 0.86171 0.77762 0.77661 0.84977 1.20665 1.22093 1.22055 1.45760 1.07667 1.08653 1.73513 1.19594 0.82971 0.89097 0.77336 1.90737 1.57293 1.45224 1.45849 1.21895 0.94421 0.97864 1.05683 1.22060 0.94866 0.74766 1.07263 1.48851 1.35810 1.15312 1.10660 1.27812 0.96736 0.89333 0.99507 1.74996 1.20275 1.17042 1.03753 1.78613 1.08401 1.12268 1.08364 1.78828 1.19279 0.98514 1.11532 0.89788 0.95360 0.92419 0.92137 0.92497 0.92113 0.92475 0.91958 0.92315 0.90670 0.90165 0.96956 0.91516 0.78599 0.93826 0.77004 0.87722 0.87910 0.85487 0.86814 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.29 37.16 0.27 -1.60 16 2 C -0.09 -1.14 2.07 -90.62 -0.19 -1.33 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.13 5.04 -26.73 -0.13 -1.26 16 5 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 6 C -0.12 -1.23 5.75 -26.73 -0.15 -1.38 16 7 C -0.12 -1.60 4.70 -26.73 -0.13 -1.72 16 8 C 0.18 2.55 0.32 -131.82 -0.04 2.50 16 9 C 0.13 2.53 4.44 -4.05 -0.02 2.51 16 10 N -0.72 -16.86 5.17 -59.91 -0.31 -17.17 16 11 C -0.22 -6.02 9.99 -15.05 -0.15 -6.17 16 12 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 13 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 14 N -0.94 -27.08 13.06 55.49 0.72 -26.35 16 15 Si 0.90 21.99 29.55 -169.99 -5.02 16.96 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 N -0.70 -9.04 3.58 -47.61 -0.17 -9.21 16 20 C 0.52 6.92 5.88 -10.98 -0.06 6.86 16 21 O -0.51 -8.05 9.44 5.56 0.05 -8.00 16 22 C -0.16 -1.61 5.84 -27.88 -0.16 -1.77 16 23 C 0.13 1.23 5.77 -4.04 -0.02 1.21 16 24 N -0.30 -3.27 3.44 -62.55 -0.22 -3.49 16 25 C 0.16 1.69 12.79 -90.40 -1.16 0.53 16 26 N -0.31 -4.25 12.36 29.59 0.37 -3.89 16 27 N -0.08 -1.22 13.43 60.35 0.81 -0.41 16 28 N -0.09 -1.26 13.07 60.35 0.79 -0.47 16 29 H 0.08 1.31 5.04 -51.93 -0.26 1.05 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.76 5.32 -51.93 -0.28 0.48 16 32 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.27 7.17 -51.93 -0.37 0.89 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 1.37 4.25 -51.93 -0.22 1.15 16 42 H 0.38 9.19 6.49 -40.82 -0.27 8.92 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.40 4.45 7.07 -40.82 -0.29 4.16 16 45 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.13 1.13 8.04 -51.93 -0.42 0.72 16 48 H 0.11 1.00 8.10 -51.93 -0.42 0.57 16 49 H 0.24 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -32.75 377.11 -6.96 -39.71 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.46 Total: 10.13 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.20 Total: -3.49 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 1.99 Total: -60.99 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.05 Total: -8.00 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.75 -6.96 -39.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.085 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds