Wall clock time and date at job start Tue Mar 31 2020 21:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47383 * 2 1 4 4 C 1.53002 * 109.46804 * 239.99645 * 2 1 3 5 5 C 1.53003 * 109.47169 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46923 * 60.00395 * 5 4 2 7 7 C 1.53004 * 109.46830 * 300.00175 * 6 5 4 8 8 C 1.52994 * 109.47574 * 60.00030 * 7 6 5 9 9 C 1.52994 * 109.47477 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47302 * 294.14203 * 9 8 7 11 11 C 1.36943 * 119.99885 * 183.54975 * 10 9 8 12 12 H 1.07994 * 120.00188 * 359.97438 * 11 10 9 13 13 C 1.38821 * 119.99760 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99917 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 119.99926 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47387 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47049 * 119.99648 * 15 13 11 18 18 H 1.48498 * 109.47359 * 239.99943 * 15 13 11 19 19 N 1.46502 * 109.46936 * 59.99627 * 8 7 6 20 20 C 1.34777 * 119.99572 * 171.16614 * 19 8 7 21 21 O 1.21275 * 120.00523 * 354.00209 * 20 19 8 22 22 C 1.50705 * 119.99691 * 174.00424 * 20 19 8 23 23 C 1.52995 * 109.47113 * 179.97438 * 22 20 19 24 24 N 1.46504 * 109.47337 * 180.02562 * 23 22 20 25 25 C 1.34593 * 126.44100 * 124.70984 * 24 23 22 26 26 N 1.31069 * 106.67907 * 179.87641 * 25 24 23 27 27 N 1.28840 * 107.99175 * 0.38606 * 26 25 24 28 28 N 1.28738 * 109.39561 * 359.75467 * 27 26 25 29 29 H 1.09004 * 109.46871 * 291.99170 * 1 2 3 30 30 H 1.08999 * 109.47028 * 51.98654 * 1 2 3 31 31 H 1.08992 * 109.47256 * 171.99218 * 1 2 3 32 32 H 1.08994 * 109.47441 * 300.00320 * 4 2 1 33 33 H 1.09002 * 109.46724 * 60.00640 * 4 2 1 34 34 H 1.08998 * 109.46986 * 300.00913 * 5 4 2 35 35 H 1.08999 * 109.47254 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47262 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46974 * 59.99679 * 6 5 4 38 38 H 1.09001 * 109.46936 * 299.99527 * 7 6 5 39 39 H 1.09003 * 109.46588 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.46672 * 54.14041 * 9 8 7 41 41 H 1.09000 * 109.47703 * 174.13564 * 9 8 7 42 42 H 0.96997 * 120.00252 * 3.54641 * 10 9 8 43 43 H 0.97003 * 119.99988 * 179.97438 * 14 13 11 44 44 H 0.96999 * 120.00014 * 351.16721 * 19 8 7 45 45 H 1.09000 * 109.47021 * 299.99582 * 22 20 19 46 46 H 1.09000 * 109.47257 * 59.99668 * 22 20 19 47 47 H 1.09001 * 109.47366 * 299.99523 * 23 22 20 48 48 H 1.09000 * 109.47292 * 59.99737 * 23 22 20 49 49 H 1.08003 * 126.65885 * 0.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7220 -1.2490 6 6 4.0795 -1.4436 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0395 -0.7217 1.2493 9 6 1.5295 -0.0010 2.4988 10 7 1.8988 -0.7689 3.6904 11 6 1.4842 -0.3542 4.9279 12 1 0.8854 0.5393 5.0254 13 6 1.8337 -1.0822 6.0570 14 7 2.5638 -2.1707 5.9382 15 14 1.2688 -0.5161 7.7451 16 1 0.4671 0.7264 7.6079 17 1 0.4360 -1.5754 8.3694 18 1 2.4534 -0.2496 8.5999 19 7 1.5506 -2.1027 1.2489 20 6 0.2384 -2.3530 1.4279 21 8 -0.5207 -1.4464 1.6973 22 6 -0.2855 -3.7597 1.2934 23 6 -1.7947 -3.7679 1.5441 24 7 -2.3040 -5.1354 1.4139 25 6 -3.0064 -5.8181 2.3369 26 7 -3.2637 -6.9945 1.8195 27 7 -2.7393 -7.0353 0.6433 28 7 -2.1586 -5.9135 0.3951 29 1 -0.3633 0.3849 0.9529 30 1 -0.3633 0.6329 -0.8097 31 1 -0.3633 -1.0176 -0.1431 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9337 0.3056 -1.2487 35 1 3.9333 -1.2355 -2.1392 36 1 5.1695 -1.4437 0.0007 37 1 3.7156 -2.4711 0.0000 38 1 3.9333 0.3052 1.2497 39 1 3.9328 -1.2362 2.1395 40 1 1.9764 0.9918 2.5534 41 1 0.4447 0.0914 2.4477 42 1 2.4369 -1.5712 3.6029 43 1 2.8084 -2.6793 6.7272 44 1 2.1713 -2.8369 1.1199 45 1 -0.0817 -4.1287 0.2882 46 1 0.2072 -4.4022 2.0231 47 1 -1.9981 -3.3991 2.5494 48 1 -2.2877 -3.1252 0.8146 49 1 -3.3028 -5.4643 3.3134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495328494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:53 Heat of formation + Delta-G solvation = 80.477693 kcal Electronic energy + Delta-G solvation = -31096.073775 eV Core-core repulsion = 27095.809751 eV Total energy + Delta-G solvation = -4000.264025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -45.17687 -42.02971 -39.18087 -36.99360 -36.33251 -34.60445 -33.79022 -33.45570 -33.06824 -32.18330 -30.72490 -27.73528 -26.85832 -26.39862 -24.81794 -24.68894 -23.62233 -22.37719 -21.84059 -21.39406 -20.02564 -19.14886 -19.00179 -18.10368 -17.65036 -17.15718 -16.83563 -16.71745 -16.20240 -15.98727 -15.29995 -15.22500 -15.01297 -14.82508 -14.75151 -14.64695 -14.15354 -13.97088 -13.77591 -13.49626 -13.28609 -13.16139 -12.95736 -12.83149 -12.75526 -12.62056 -12.54972 -12.46404 -12.22336 -12.11260 -12.00596 -11.87182 -11.80296 -11.74683 -11.35447 -11.31453 -11.02599 -10.96870 -10.74094 -10.31564 -9.56174 -8.82565 -7.90846 -5.14278 0.26759 1.00892 1.21078 1.45781 1.47860 1.56386 1.83582 2.37171 2.58703 3.26664 3.42890 3.46871 3.62008 3.70703 3.80045 3.84440 3.89169 3.95111 4.14292 4.22691 4.29973 4.38116 4.42002 4.49016 4.55287 4.59008 4.63010 4.67635 4.73441 4.79488 4.83493 4.95877 5.00213 5.08344 5.17041 5.22780 5.24190 5.26194 5.31470 5.38547 5.42460 5.49139 5.54250 5.58688 5.79613 5.84801 6.32672 6.75379 7.40248 7.46781 7.55423 8.18314 8.44766 9.32303 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.004889 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.142811 B = 5725.954987 C = 8613.668160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.104 4.104 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.190 3.810 9 C 0.133 3.867 10 N -0.725 5.725 11 C -0.228 4.228 12 H 0.062 0.938 13 C -0.069 4.069 14 N -0.965 5.965 15 Si 0.960 3.040 16 H -0.274 1.274 17 H -0.293 1.293 18 H -0.297 1.297 19 N -0.702 5.702 20 C 0.520 3.480 21 O -0.541 6.541 22 C -0.147 4.147 23 C 0.135 3.865 24 N -0.300 5.300 25 C 0.178 3.822 26 N -0.341 5.341 27 N -0.111 5.111 28 N -0.104 5.104 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.000 1.000 41 H 0.056 0.944 42 H 0.375 0.625 43 H 0.248 0.752 44 H 0.405 0.595 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.134 0.866 48 H 0.123 0.877 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 -0.220 -15.325 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.154 4.154 8 C 0.104 3.896 9 C 0.006 3.994 10 N -0.368 5.368 11 C -0.360 4.360 12 H 0.080 0.920 13 C -0.261 4.261 14 N -0.617 5.617 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.224 1.224 19 N -0.354 5.354 20 C 0.306 3.694 21 O -0.419 6.419 22 C -0.188 4.188 23 C 0.015 3.985 24 N -0.102 5.102 25 C -0.120 4.120 26 N -0.190 5.190 27 N -0.106 5.106 28 N -0.092 5.092 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.208 0.792 43 H 0.057 0.943 44 H 0.241 0.759 45 H 0.139 0.861 46 H 0.118 0.882 47 H 0.152 0.848 48 H 0.141 0.859 49 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -3.215 -0.409 -16.063 16.387 hybrid contribution 0.418 0.516 2.121 2.223 sum -2.798 0.107 -13.942 14.220 Atomic orbital electron populations 1.22260 0.94451 1.01751 1.00712 1.21445 0.96293 0.99121 0.93930 0.91058 1.21508 0.95713 1.00606 0.96283 1.21527 0.95148 1.00896 0.97621 1.21528 1.00794 0.99301 0.93426 1.21718 0.92963 1.01915 0.98828 1.20405 0.93683 0.81597 0.93906 1.21413 0.99478 0.92672 0.85852 1.42258 1.62971 1.30252 1.01322 1.19522 1.24690 1.06121 0.85690 0.92017 1.25281 1.02019 0.98264 1.00535 1.69773 1.44116 1.19186 1.28607 0.85254 0.77092 0.77396 0.81139 1.19862 1.22057 1.22432 1.45741 1.07976 1.08406 1.73246 1.20080 0.82763 0.90014 0.76544 1.90742 1.57849 1.46338 1.46986 1.21796 0.94821 0.95586 1.06552 1.22122 0.94285 0.74128 1.07995 1.48913 1.35574 1.15406 1.10282 1.28575 0.95014 0.88161 1.00293 1.74935 1.21354 1.18879 1.03820 1.78591 1.09534 1.13157 1.09296 1.78761 1.19443 0.98522 1.12429 0.92650 0.94204 0.92286 0.91786 0.91280 0.91964 0.90512 0.91033 0.91388 0.91136 0.93102 0.98208 0.92604 0.79194 0.94308 0.75919 0.86105 0.88196 0.84814 0.85932 0.70805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 7.29 71.98 0.52 -2.89 16 2 C -0.09 -2.05 2.07 -10.79 -0.02 -2.07 16 3 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.10 -1.83 5.04 30.60 0.15 -1.67 16 5 C -0.11 -1.82 5.92 30.60 0.18 -1.63 16 6 C -0.11 -2.08 5.75 30.60 0.18 -1.90 16 7 C -0.12 -3.02 4.70 30.59 0.14 -2.87 16 8 C 0.19 5.26 0.32 3.60 0.00 5.26 16 9 C 0.13 5.14 4.44 86.38 0.38 5.52 16 10 N -0.73 -34.39 5.17 -343.46 -1.77 -36.16 16 11 C -0.23 -12.38 9.99 84.03 0.84 -11.54 16 12 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 13 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 14 N -0.96 -56.15 13.06 21.65 0.28 -55.87 16 15 Si 0.96 45.35 29.55 68.60 2.03 47.38 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 N -0.70 -17.38 3.58 -422.93 -1.51 -18.90 16 20 C 0.52 13.22 5.88 87.66 0.52 13.73 16 21 O -0.54 -16.73 9.44 -3.02 -0.03 -16.76 16 22 C -0.15 -2.77 5.84 29.85 0.17 -2.59 16 23 C 0.14 2.29 5.77 86.38 0.50 2.79 16 24 N -0.30 -5.95 3.44 -351.82 -1.21 -7.16 16 25 C 0.18 3.31 12.79 180.27 2.31 5.61 16 26 N -0.34 -9.00 12.36 -60.30 -0.75 -9.74 16 27 N -0.11 -3.27 13.43 37.01 0.50 -2.77 16 28 N -0.10 -2.65 13.07 37.02 0.48 -2.17 16 29 H 0.05 1.74 5.04 -2.38 -0.01 1.73 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.06 1.46 5.32 -2.39 -0.01 1.45 16 32 H 0.06 1.11 7.60 -2.39 -0.02 1.09 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.14 6.70 -2.39 -0.02 1.12 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.62 7.17 -2.39 -0.02 1.61 16 40 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 41 H 0.06 2.34 4.25 -2.39 -0.01 2.33 16 42 H 0.38 18.45 6.49 -92.71 -0.60 17.85 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.40 8.56 7.07 -92.71 -0.66 7.91 16 45 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.13 2.15 8.04 -2.39 -0.02 2.13 16 48 H 0.12 1.92 8.10 -2.39 -0.02 1.90 16 49 H 0.28 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -71.41 377.11 4.09 -67.32 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.27 Total: 32.42 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.34 Total: 2.39 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -3.98 Total: -132.76 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.03 Total: -16.76 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.41 4.09 -67.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495328494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.801 kcal (2) G-P(sol) polarization free energy of solvation -71.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds