Wall clock time and date at job start Tue Mar 31 2020 19:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00430 * 2 1 4 4 C 1.53002 * 109.47322 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46722 * 65.00309 * 4 3 2 6 6 C 1.36941 * 119.99958 * 270.00001 * 5 4 3 7 7 H 1.07994 * 119.99943 * 141.45935 * 6 5 4 8 8 C 1.38811 * 119.99864 * 321.46139 * 6 5 4 9 9 N 1.31618 * 120.00141 * 338.82234 * 8 6 5 10 10 Si 1.86797 * 120.00013 * 158.82891 * 8 6 5 11 11 H 1.48501 * 109.46897 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47564 * 119.99453 * 10 8 6 13 13 H 1.48503 * 109.47037 * 240.00012 * 10 8 6 14 14 C 1.46504 * 119.99920 * 89.99944 * 5 4 3 15 15 C 1.53005 * 109.46940 * 264.70866 * 14 5 4 16 16 N 1.46495 * 109.46772 * 179.97438 * 15 14 5 17 17 C 1.34781 * 120.00037 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99551 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00426 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.46463 * 299.99633 * 19 17 16 21 21 C 1.53138 * 109.46923 * 179.97438 * 19 17 16 22 22 C 1.53404 * 109.27909 * 170.48492 * 21 19 17 23 23 C 1.51153 * 108.15248 * 48.80826 * 22 21 19 24 24 N 1.30085 * 127.37202 * 164.02123 * 23 22 21 25 25 C 1.34292 * 109.21303 * 180.11443 * 24 23 22 26 26 C 1.34857 * 108.06834 * 359.97317 * 25 24 23 27 27 N 1.35422 * 123.99748 * 344.08698 * 23 22 21 28 28 C 1.46473 * 124.82779 * 359.84626 * 27 23 22 29 29 H 1.08998 * 109.46800 * 300.00341 * 1 2 3 30 30 H 1.09000 * 109.46726 * 59.99633 * 1 2 3 31 31 H 1.08997 * 109.47543 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46935 * 60.00202 * 3 2 1 33 33 H 1.08997 * 109.47454 * 299.99898 * 3 2 1 34 34 H 1.09000 * 109.47235 * 305.00351 * 4 3 2 35 35 H 1.08991 * 109.47157 * 185.00066 * 4 3 2 36 36 H 0.97001 * 120.00577 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.46642 * 144.71113 * 14 5 4 38 38 H 1.09000 * 109.46844 * 24.71068 * 14 5 4 39 39 H 1.09001 * 109.46831 * 60.00296 * 15 14 5 40 40 H 1.09001 * 109.47115 * 300.00147 * 15 14 5 41 41 H 0.97002 * 120.00543 * 0.02562 * 16 15 14 42 42 H 1.08995 * 109.51613 * 290.44084 * 21 19 17 43 43 H 1.09008 * 109.50863 * 50.53616 * 21 19 17 44 44 H 1.08995 * 109.71342 * 168.52273 * 22 21 19 45 45 H 1.08996 * 109.71509 * 289.16845 * 22 21 19 46 46 H 1.07998 * 125.96772 * 179.97438 * 25 24 23 47 47 H 1.08000 * 126.65081 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.58277 * 223.09361 * 28 27 23 49 49 H 1.09001 * 109.58280 * 102.67728 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2510 6 6 4.0977 -0.7977 -1.3346 7 1 3.8084 -1.3109 -2.2397 8 6 4.5924 -1.5180 -0.2561 9 7 5.3194 -0.9148 0.6604 10 14 4.2263 -3.3436 -0.1054 11 1 3.3943 -3.7782 -1.2561 12 1 5.5009 -4.1053 -0.1001 13 1 3.4919 -3.5984 1.1600 14 6 4.2883 1.3997 -2.4131 15 6 3.0608 1.4870 -3.3223 16 7 3.3723 2.3234 -4.4841 17 6 2.4345 2.5437 -5.4267 18 8 1.3326 2.0498 -5.3129 19 6 2.7549 3.4035 -6.6221 20 1 3.0311 4.4032 -6.2868 21 6 1.5263 3.4910 -7.5320 22 6 1.7725 4.5490 -8.6152 23 6 3.1283 4.2869 -9.2300 24 7 3.5914 4.7577 -10.3507 25 6 4.8342 4.2884 -10.5472 26 6 5.1516 3.4952 -9.5038 27 7 4.0731 3.4946 -8.6702 28 6 3.9230 2.7847 -7.3978 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6888 1.8463 -0.8900 34 1 3.8509 0.5683 0.8427 35 1 3.9786 2.1763 0.0902 36 1 5.6654 -1.4182 1.4139 37 1 5.1188 0.9595 -2.9650 38 1 4.5641 2.3995 -2.0779 39 1 2.2304 1.9272 -2.7703 40 1 2.7850 0.4871 -3.6574 41 1 4.2534 2.7187 -4.5749 42 1 1.3514 2.5231 -8.0017 43 1 0.6546 3.7715 -6.9407 44 1 1.0003 4.4777 -9.3811 45 1 1.7574 5.5431 -8.1684 46 1 5.4687 4.5079 -11.3931 47 1 6.0802 2.9634 -9.3573 48 1 4.8396 2.8802 -6.8158 49 1 3.7173 1.7315 -7.5891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508047042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:30 Heat of formation + Delta-G solvation = 0.092335 kcal Electronic energy + Delta-G solvation = -29431.491990 eV Core-core repulsion = 25395.449443 eV Total energy + Delta-G solvation = -4036.042547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.56187 -39.94948 -37.36682 -36.49667 -35.78916 -34.36817 -33.45940 -31.55833 -30.60612 -29.38752 -28.71039 -27.35829 -25.67450 -25.01902 -24.09647 -22.97707 -21.72700 -21.56436 -20.72354 -20.13917 -19.25853 -17.51783 -17.20226 -16.74749 -16.02179 -15.94221 -15.58673 -15.39005 -15.04057 -14.70562 -14.52718 -14.40942 -14.31560 -14.10538 -14.01371 -13.76507 -13.60107 -13.30044 -13.09515 -12.67967 -12.19255 -12.03978 -11.98257 -11.84970 -11.56328 -11.34262 -11.24300 -10.94548 -10.83467 -10.74749 -10.65125 -10.19532 -10.13402 -10.00961 -9.89342 -9.82822 -9.76790 -8.97173 -8.74703 -8.56495 -8.45633 -6.63942 -5.79978 -3.38000 1.82148 2.32680 2.63047 2.93557 3.14745 3.40107 3.48532 3.52790 3.94763 4.11964 4.21130 4.28611 4.52364 4.65862 4.66198 4.79493 4.81382 4.96890 5.02084 5.20895 5.23357 5.30737 5.41025 5.47600 5.59271 5.65515 5.69944 5.73728 5.77172 5.83272 5.84099 6.02067 6.06682 6.11279 6.20131 6.22601 6.46014 6.54421 6.55326 6.58472 6.62019 6.84462 6.90520 7.51688 7.56788 7.83310 7.89433 8.04096 8.18983 8.52146 9.14955 9.78263 10.32291 11.22504 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.002464 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.760031 B =11361.193096 C =12218.356297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.143 3.857 5 N -0.570 5.570 6 C -0.247 4.247 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.891 5.891 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.287 1.287 14 C 0.138 3.862 15 C 0.094 3.906 16 N -0.721 5.721 17 C 0.516 3.484 18 O -0.532 6.532 19 C -0.122 4.122 20 H 0.108 0.892 21 C -0.106 4.106 22 C -0.034 4.034 23 C 0.207 3.793 24 N -0.491 5.491 25 C -0.033 4.033 26 C -0.053 4.053 27 N -0.454 5.454 28 C 0.113 3.887 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.253 0.747 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.170 0.830 47 H 0.176 0.824 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 11.396 -13.414 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.035 4.035 4 C 0.017 3.983 5 N -0.289 5.289 6 C -0.377 4.377 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.010 3.990 15 C -0.031 4.031 16 N -0.372 5.372 17 C 0.300 3.700 18 O -0.408 6.408 19 C -0.144 4.144 20 H 0.126 0.874 21 C -0.145 4.145 22 C -0.072 4.072 23 C -0.056 4.056 24 N -0.210 5.210 25 C -0.181 4.181 26 C -0.186 4.186 27 N -0.138 5.138 28 C -0.009 4.009 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.229 0.771 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.187 0.813 47 H 0.193 0.807 48 H 0.116 0.884 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.745 11.203 -13.526 17.958 hybrid contribution 0.541 -1.092 0.675 1.393 sum -3.204 10.111 -12.852 16.663 Atomic orbital electron populations 1.22641 0.84127 1.01552 0.98478 1.88204 1.16644 1.27536 1.94827 1.23486 0.98772 0.84285 0.96941 1.21071 0.87553 0.96621 0.93057 1.43526 1.75498 1.02886 1.07027 1.18838 1.36372 0.81278 1.01170 0.92541 1.25067 0.95965 0.97877 0.98864 1.69984 1.33631 1.35919 1.13813 0.86300 0.77411 0.85391 0.77973 1.20135 1.22067 1.21397 1.20993 0.93148 0.94802 0.90025 1.22527 1.01282 0.94098 0.85185 1.46192 1.15247 1.51990 1.23778 1.20074 0.85179 0.81317 0.83479 1.90739 1.22375 1.50074 1.77596 1.21678 0.96842 1.01002 0.94873 0.87373 1.21532 0.97060 1.00090 0.95777 1.20270 0.89390 0.99997 0.97580 1.23419 0.94267 0.95711 0.92176 1.70065 1.10671 1.25212 1.15039 1.22369 0.94267 1.01195 1.00263 1.22612 0.93962 1.07753 0.94268 1.45339 1.13440 1.36887 1.18085 1.21901 0.99507 0.96985 0.82556 0.95530 0.95174 0.90684 0.95746 0.95321 0.87956 0.94062 0.93681 0.92997 0.94166 0.92191 0.91372 0.77056 0.90430 0.88705 0.88273 0.89095 0.81312 0.80705 0.88385 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.74 10.18 -35.23 -0.36 -8.10 16 3 C 0.04 0.87 6.28 37.16 0.23 1.11 16 4 C 0.14 3.17 5.76 -4.04 -0.02 3.14 16 5 N -0.57 -13.10 2.41 -173.23 -0.42 -13.51 16 6 C -0.25 -6.47 8.95 -15.06 -0.13 -6.61 16 7 H 0.06 1.52 7.91 -52.49 -0.42 1.10 16 8 C 0.02 0.60 4.95 -17.43 -0.09 0.52 16 9 N -0.89 -24.89 11.53 55.49 0.64 -24.25 16 10 Si 0.90 21.83 29.60 -169.99 -5.03 16.80 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 14 C 0.14 2.51 5.83 -4.04 -0.02 2.49 16 15 C 0.09 1.57 5.97 -4.04 -0.02 1.55 16 16 N -0.72 -8.78 5.46 -60.29 -0.33 -9.11 16 17 C 0.52 6.44 7.14 -10.98 -0.08 6.36 16 18 O -0.53 -8.96 15.83 5.55 0.09 -8.87 16 19 C -0.12 -1.06 2.54 -91.56 -0.23 -1.30 16 20 H 0.11 0.79 8.12 -51.93 -0.42 0.37 16 21 C -0.11 -0.94 4.68 -26.45 -0.12 -1.07 16 22 C -0.03 -0.28 6.34 -27.45 -0.17 -0.45 16 23 C 0.21 2.26 7.65 -155.19 -1.19 1.07 16 24 N -0.49 -6.22 11.24 -10.58 -0.12 -6.34 16 25 C -0.03 -0.35 11.87 -17.68 -0.21 -0.56 16 26 C -0.05 -0.49 11.64 -16.76 -0.20 -0.68 16 27 N -0.45 -4.39 3.13 -113.71 -0.36 -4.75 16 28 C 0.11 0.91 6.11 -3.92 -0.02 0.88 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.03 0.54 6.48 -51.93 -0.34 0.21 16 34 H 0.10 2.64 5.58 -51.93 -0.29 2.35 16 35 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 36 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16 39 H 0.06 1.09 6.48 -51.93 -0.34 0.75 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.40 3.58 8.11 -40.82 -0.33 3.25 16 42 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.09 0.86 7.79 -51.92 -0.40 0.46 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 48 H 0.10 0.59 7.86 -51.93 -0.41 0.18 16 49 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -33.77 397.19 -9.03 -42.80 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.96 Total: 1.30 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.17 Total: 8.06 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.58 Total: -57.97 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.27 Total: -16.97 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.77 -9.03 -42.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508047042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.889 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds