Wall clock time and date at job start Tue Mar 31 2020 19:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00430 * 2 1 4 4 C 1.53002 * 109.47322 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46722 * 65.00309 * 4 3 2 6 6 C 1.36941 * 119.99958 * 270.00001 * 5 4 3 7 7 H 1.07994 * 119.99943 * 141.45935 * 6 5 4 8 8 C 1.38811 * 119.99864 * 321.46139 * 6 5 4 9 9 N 1.31618 * 120.00141 * 338.82234 * 8 6 5 10 10 Si 1.86797 * 120.00013 * 158.82891 * 8 6 5 11 11 H 1.48501 * 109.46897 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47564 * 119.99453 * 10 8 6 13 13 H 1.48503 * 109.47037 * 240.00012 * 10 8 6 14 14 C 1.46504 * 119.99920 * 89.99944 * 5 4 3 15 15 C 1.53005 * 109.46940 * 264.70866 * 14 5 4 16 16 N 1.46495 * 109.46772 * 179.97438 * 15 14 5 17 17 C 1.34781 * 120.00037 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99551 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00426 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.46463 * 299.99633 * 19 17 16 21 21 C 1.53138 * 109.46923 * 179.97438 * 19 17 16 22 22 C 1.53404 * 109.27909 * 170.48492 * 21 19 17 23 23 C 1.51153 * 108.15248 * 48.80826 * 22 21 19 24 24 N 1.30085 * 127.37202 * 164.02123 * 23 22 21 25 25 C 1.34292 * 109.21303 * 180.11443 * 24 23 22 26 26 C 1.34857 * 108.06834 * 359.97317 * 25 24 23 27 27 N 1.35422 * 123.99748 * 344.08698 * 23 22 21 28 28 C 1.46473 * 124.82779 * 359.84626 * 27 23 22 29 29 H 1.08998 * 109.46800 * 300.00341 * 1 2 3 30 30 H 1.09000 * 109.46726 * 59.99633 * 1 2 3 31 31 H 1.08997 * 109.47543 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46935 * 60.00202 * 3 2 1 33 33 H 1.08997 * 109.47454 * 299.99898 * 3 2 1 34 34 H 1.09000 * 109.47235 * 305.00351 * 4 3 2 35 35 H 1.08991 * 109.47157 * 185.00066 * 4 3 2 36 36 H 0.97001 * 120.00577 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.46642 * 144.71113 * 14 5 4 38 38 H 1.09000 * 109.46844 * 24.71068 * 14 5 4 39 39 H 1.09001 * 109.46831 * 60.00296 * 15 14 5 40 40 H 1.09001 * 109.47115 * 300.00147 * 15 14 5 41 41 H 0.97002 * 120.00543 * 0.02562 * 16 15 14 42 42 H 1.08995 * 109.51613 * 290.44084 * 21 19 17 43 43 H 1.09008 * 109.50863 * 50.53616 * 21 19 17 44 44 H 1.08995 * 109.71342 * 168.52273 * 22 21 19 45 45 H 1.08996 * 109.71509 * 289.16845 * 22 21 19 46 46 H 1.07998 * 125.96772 * 179.97438 * 25 24 23 47 47 H 1.08000 * 126.65081 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.58277 * 223.09361 * 28 27 23 49 49 H 1.09001 * 109.58280 * 102.67728 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2510 6 6 4.0977 -0.7977 -1.3346 7 1 3.8084 -1.3109 -2.2397 8 6 4.5924 -1.5180 -0.2561 9 7 5.3194 -0.9148 0.6604 10 14 4.2263 -3.3436 -0.1054 11 1 3.3943 -3.7782 -1.2561 12 1 5.5009 -4.1053 -0.1001 13 1 3.4919 -3.5984 1.1600 14 6 4.2883 1.3997 -2.4131 15 6 3.0608 1.4870 -3.3223 16 7 3.3723 2.3234 -4.4841 17 6 2.4345 2.5437 -5.4267 18 8 1.3326 2.0498 -5.3129 19 6 2.7549 3.4035 -6.6221 20 1 3.0311 4.4032 -6.2868 21 6 1.5263 3.4910 -7.5320 22 6 1.7725 4.5490 -8.6152 23 6 3.1283 4.2869 -9.2300 24 7 3.5914 4.7577 -10.3507 25 6 4.8342 4.2884 -10.5472 26 6 5.1516 3.4952 -9.5038 27 7 4.0731 3.4946 -8.6702 28 6 3.9230 2.7847 -7.3978 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8901 33 1 1.6888 1.8463 -0.8900 34 1 3.8509 0.5683 0.8427 35 1 3.9786 2.1763 0.0902 36 1 5.6654 -1.4182 1.4139 37 1 5.1188 0.9595 -2.9650 38 1 4.5641 2.3995 -2.0779 39 1 2.2304 1.9272 -2.7703 40 1 2.7850 0.4871 -3.6574 41 1 4.2534 2.7187 -4.5749 42 1 1.3514 2.5231 -8.0017 43 1 0.6546 3.7715 -6.9407 44 1 1.0003 4.4777 -9.3811 45 1 1.7574 5.5431 -8.1684 46 1 5.4687 4.5079 -11.3931 47 1 6.0802 2.9634 -9.3573 48 1 4.8396 2.8802 -6.8158 49 1 3.7173 1.7315 -7.5891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508047042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:29 Heat of formation + Delta-G solvation = -22.213961 kcal Electronic energy + Delta-G solvation = -29432.459264 eV Core-core repulsion = 25395.449443 eV Total energy + Delta-G solvation = -4037.009820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.29247 -40.99628 -38.94529 -37.56512 -37.09421 -35.74721 -34.20105 -33.37402 -31.65462 -30.72096 -29.51443 -28.84560 -27.16142 -26.02232 -25.47314 -24.02214 -23.02361 -22.32454 -22.20116 -21.36773 -20.02050 -18.76457 -18.25490 -18.00366 -17.41783 -16.92431 -16.80042 -16.54847 -16.51991 -16.30554 -15.67272 -15.55999 -15.29027 -15.19306 -15.05768 -14.90691 -14.69661 -14.60204 -14.19084 -13.85504 -13.58798 -13.42520 -13.02573 -12.88785 -12.77393 -12.73263 -12.45584 -12.39548 -12.34779 -12.22226 -12.04566 -11.94120 -11.70707 -11.53403 -11.05205 -10.94582 -10.58618 -10.46506 -10.37323 -10.04940 -9.28136 -8.53490 -7.78794 -5.39023 1.10827 1.43783 1.44584 1.50230 1.57929 1.80340 2.11176 2.18068 2.57231 3.18893 3.24102 3.34317 3.42308 3.47506 3.54937 3.79056 3.99428 4.08814 4.17627 4.24819 4.30243 4.32610 4.35634 4.41938 4.51323 4.56757 4.57884 4.59781 4.70900 4.73430 4.74834 4.81770 4.90522 4.93946 4.96328 4.98296 5.12999 5.13231 5.23835 5.35062 5.48718 5.72009 5.79561 5.85444 6.19753 6.46584 6.52607 6.64906 7.14937 7.19621 7.23765 7.90080 8.39142 9.18768 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.002464 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.760031 B =11361.193096 C =12218.356297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.052 3.948 4 C 0.141 3.859 5 N -0.587 5.587 6 C -0.241 4.241 7 H 0.043 0.957 8 C -0.021 4.021 9 N -0.915 5.915 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.295 1.295 14 C 0.142 3.858 15 C 0.118 3.882 16 N -0.708 5.708 17 C 0.520 3.480 18 O -0.577 6.577 19 C -0.108 4.108 20 H 0.133 0.867 21 C -0.101 4.101 22 C -0.026 4.026 23 C 0.191 3.809 24 N -0.528 5.528 25 C -0.058 4.058 26 C -0.047 4.047 27 N -0.456 5.456 28 C 0.114 3.886 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.249 0.751 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.034 0.966 41 H 0.416 0.584 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.185 0.815 47 H 0.206 0.794 48 H 0.126 0.874 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 12.756 -14.037 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.015 3.985 5 N -0.307 5.307 6 C -0.371 4.371 7 H 0.061 0.939 8 C -0.219 4.219 9 N -0.560 5.560 10 Si 0.774 3.226 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.222 1.222 14 C 0.015 3.985 15 C -0.009 4.009 16 N -0.360 5.360 17 C 0.306 3.694 18 O -0.456 6.456 19 C -0.129 4.129 20 H 0.151 0.849 21 C -0.140 4.140 22 C -0.065 4.065 23 C -0.072 4.072 24 N -0.247 5.247 25 C -0.205 4.205 26 C -0.180 4.180 27 N -0.139 5.139 28 C -0.008 4.008 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.202 0.798 47 H 0.223 0.777 48 H 0.144 0.856 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.411 12.592 -14.180 19.269 hybrid contribution 0.399 -1.474 0.798 1.723 sum -3.012 11.119 -13.382 17.657 Atomic orbital electron populations 1.22799 0.81778 1.02574 0.99853 1.88128 1.19379 1.28850 1.95161 1.23347 0.97067 0.83954 0.98336 1.21014 0.89356 0.96633 0.91478 1.43678 1.76022 1.02424 1.08569 1.18868 1.34732 0.83158 1.00392 0.93928 1.25539 0.96702 1.00404 0.99211 1.70070 1.34999 1.36631 1.14260 0.85595 0.77059 0.82667 0.77292 1.20131 1.21787 1.22166 1.21049 0.93511 0.95275 0.88650 1.21906 0.99925 0.92966 0.86084 1.45933 1.16350 1.51246 1.22511 1.20632 0.84210 0.80648 0.83922 1.90730 1.24391 1.51889 1.78620 1.21574 0.97142 1.01193 0.93016 0.84892 1.21461 0.97132 0.99581 0.95820 1.20294 0.88479 1.00417 0.97331 1.23803 0.95170 0.96026 0.92190 1.70023 1.11942 1.26597 1.16168 1.22788 0.94144 1.01982 1.01573 1.23109 0.94585 1.06871 0.93416 1.45440 1.13347 1.36621 1.18449 1.21989 1.00278 0.96354 0.82214 0.93294 0.94489 0.89988 0.93497 0.94468 0.91680 0.92028 0.94162 0.93064 0.91464 0.93514 0.94787 0.74745 0.91920 0.88971 0.87906 0.87515 0.79814 0.77737 0.85638 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.40 -17.10 10.18 -148.98 -1.52 -18.61 16 3 C 0.05 1.97 6.28 71.98 0.45 2.42 16 4 C 0.14 6.15 5.76 86.38 0.50 6.64 16 5 N -0.59 -26.67 2.41 -701.98 -1.69 -28.36 16 6 C -0.24 -12.70 8.95 84.03 0.75 -11.95 16 7 H 0.04 2.33 7.91 -2.91 -0.02 2.31 16 8 C -0.02 -1.16 4.95 84.86 0.42 -0.74 16 9 N -0.92 -51.76 11.53 21.65 0.25 -51.51 16 10 Si 0.94 45.39 29.60 68.60 2.03 47.42 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 14 C 0.14 4.92 5.83 86.38 0.50 5.43 16 15 C 0.12 3.79 5.97 86.38 0.52 4.31 16 16 N -0.71 -15.64 5.46 -463.05 -2.53 -18.17 16 17 C 0.52 12.05 7.14 87.66 0.63 12.67 16 18 O -0.58 -19.14 15.83 -3.05 -0.05 -19.19 16 19 C -0.11 -1.61 2.54 -11.40 -0.03 -1.64 16 20 H 0.13 1.42 8.12 -2.39 -0.02 1.40 16 21 C -0.10 -1.66 4.68 30.78 0.14 -1.51 16 22 C -0.03 -0.40 6.34 30.13 0.19 -0.21 16 23 C 0.19 3.87 7.65 138.27 1.06 4.92 16 24 N -0.53 -12.84 11.24 -187.40 -2.11 -14.94 16 25 C -0.06 -1.14 11.87 83.54 0.99 -0.15 16 26 C -0.05 -0.74 11.64 83.22 0.97 0.23 16 27 N -0.46 -7.72 3.13 -513.67 -1.61 -9.33 16 28 C 0.11 1.50 6.11 86.47 0.53 2.03 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.04 1.35 6.48 -2.39 -0.02 1.33 16 34 H 0.07 3.39 5.58 -2.39 -0.01 3.37 16 35 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 36 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 37 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.07 1.99 7.83 -2.39 -0.02 1.97 16 39 H 0.05 1.65 6.48 -2.39 -0.02 1.63 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.42 6.06 8.11 -92.71 -0.75 5.30 16 42 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 43 H 0.09 1.58 7.79 -2.38 -0.02 1.56 16 44 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 47 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.13 0.98 7.86 -2.39 -0.02 0.97 16 49 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 Total: -1.00 -74.75 397.19 1.85 -72.90 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.20 Total: 15.21 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 8.87 Total: 24.58 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -7.68 Total: -122.31 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.56 Total: -37.80 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.75 1.85 -72.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508047042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.690 kcal (2) G-P(sol) polarization free energy of solvation -74.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds