Wall clock time and date at job start Tue Mar 31 2020 19:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00215 * 2 1 4 4 C 1.53003 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47043 * 65.00385 * 4 3 2 6 6 C 1.36938 * 119.99692 * 269.99674 * 5 4 3 7 7 H 1.07997 * 120.00331 * 145.89209 * 6 5 4 8 8 C 1.38815 * 120.00140 * 325.89563 * 6 5 4 9 9 N 1.31626 * 119.99800 * 336.88155 * 8 6 5 10 10 Si 1.86798 * 120.00212 * 156.88174 * 8 6 5 11 11 H 1.48503 * 109.46974 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46882 * 119.99782 * 10 8 6 13 13 H 1.48491 * 109.47450 * 239.99854 * 10 8 6 14 14 C 1.46495 * 120.00209 * 90.00038 * 5 4 3 15 15 C 1.52994 * 109.47334 * 89.32172 * 14 5 4 16 16 N 1.46496 * 109.47255 * 179.97438 * 15 14 5 17 17 C 1.34778 * 119.99897 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00270 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99788 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.46533 * 59.99212 * 19 17 16 21 21 C 1.53157 * 109.46623 * 179.97438 * 19 17 16 22 22 C 1.53385 * 109.24844 * 189.47697 * 21 19 17 23 23 C 1.51043 * 108.21072 * 311.18008 * 22 21 19 24 24 N 1.30085 * 127.38548 * 196.02838 * 23 22 21 25 25 C 1.34295 * 109.20913 * 179.88838 * 24 23 22 26 26 C 1.34848 * 108.07248 * 0.02562 * 25 24 23 27 27 N 1.35417 * 123.98208 * 15.95294 * 23 22 21 28 28 C 1.46471 * 124.82699 * 0.13592 * 27 23 22 29 29 H 1.09003 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47024 * 299.99649 * 1 2 3 31 31 H 1.08995 * 109.47205 * 59.99669 * 1 2 3 32 32 H 1.08998 * 109.47058 * 59.99890 * 3 2 1 33 33 H 1.09002 * 109.47368 * 300.00404 * 3 2 1 34 34 H 1.09003 * 109.46640 * 185.00088 * 4 3 2 35 35 H 1.09001 * 109.47105 * 304.99880 * 4 3 2 36 36 H 0.96993 * 119.99804 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47156 * 209.32680 * 14 5 4 38 38 H 1.09003 * 109.46932 * 329.32013 * 14 5 4 39 39 H 1.08999 * 109.47414 * 300.00350 * 15 14 5 40 40 H 1.09003 * 109.47241 * 60.00031 * 15 14 5 41 41 H 0.97004 * 120.00228 * 0.02562 * 16 15 14 42 42 H 1.09004 * 109.50429 * 309.41405 * 21 19 17 43 43 H 1.08994 * 109.50706 * 69.55156 * 21 19 17 44 44 H 1.09003 * 109.73594 * 191.48309 * 22 21 19 45 45 H 1.09005 * 109.68916 * 70.84661 * 22 21 19 46 46 H 1.08000 * 125.96027 * 180.02562 * 25 24 23 47 47 H 1.08001 * 126.65545 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.58725 * 257.30158 * 28 27 23 49 49 H 1.09008 * 109.58536 * 136.89234 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0968 -0.7970 -1.3370 7 1 3.8748 -1.3026 -2.2651 8 6 4.5047 -1.5274 -0.2292 9 7 5.1957 -0.9427 0.7264 10 14 4.0731 -3.3398 -0.0948 11 1 3.2973 -3.7540 -1.2914 12 1 5.3207 -4.1410 -0.0126 13 1 3.2587 -3.5655 1.1262 14 6 4.2864 1.4007 -2.4148 15 6 5.7625 1.8008 -2.3751 16 7 6.0733 2.6366 -3.5375 17 6 7.3231 3.1098 -3.7123 18 8 8.1906 2.8434 -2.9076 19 6 7.6427 3.9700 -4.9077 20 1 7.0222 4.8659 -4.8868 21 6 9.1202 4.3715 -4.8673 22 6 9.3858 5.4314 -5.9438 23 6 8.7907 4.9435 -7.2435 24 7 9.0361 5.3888 -8.4409 25 6 8.3096 4.6913 -9.3292 26 6 7.5852 3.7777 -8.6518 27 7 7.8889 3.9373 -7.3325 28 6 7.3612 3.1836 -6.1928 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9785 2.1765 0.0889 35 1 3.8515 0.5681 0.8409 36 1 5.4811 -1.4531 1.5003 37 1 4.0858 0.8416 -3.3288 38 1 3.6662 2.2969 -2.3937 39 1 5.9630 2.3598 -1.4611 40 1 6.3826 0.9046 -2.3963 41 1 5.3795 2.8500 -4.1809 42 1 9.3592 4.7813 -3.8859 43 1 9.7406 3.4958 -5.0578 44 1 10.4599 5.5748 -6.0620 45 1 8.9181 6.3728 -5.6556 46 1 8.3063 4.8366 -10.3994 47 1 6.8979 3.0588 -9.0728 48 1 7.8500 2.2108 -6.1402 49 1 6.2860 3.0486 -6.3103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508047045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:35 Heat of formation + Delta-G solvation = 1.095222 kcal Electronic energy + Delta-G solvation = -29156.020442 eV Core-core repulsion = 25120.021384 eV Total energy + Delta-G solvation = -4035.999058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.53317 -39.84480 -37.34410 -36.46102 -35.78091 -34.30820 -33.42257 -31.51016 -30.57898 -29.40663 -28.67760 -27.28712 -25.71526 -24.97070 -23.93890 -22.91923 -22.03675 -21.56271 -20.50230 -20.01740 -19.19664 -17.45287 -17.13850 -16.73551 -15.97518 -15.80402 -15.63342 -15.34105 -15.05683 -14.64567 -14.49657 -14.43083 -14.26557 -14.06998 -14.00458 -13.80830 -13.55678 -13.17912 -13.11720 -12.64702 -12.15833 -11.99301 -11.91081 -11.75609 -11.51117 -11.29067 -11.21437 -11.00009 -10.84592 -10.74441 -10.51093 -10.21364 -10.16498 -9.99043 -9.80932 -9.77931 -9.73991 -8.88373 -8.76209 -8.53950 -8.47669 -6.69433 -5.78128 -3.31720 1.84792 2.38767 2.71534 2.96037 3.23915 3.41850 3.49797 3.52326 3.99943 4.16801 4.26431 4.34646 4.53229 4.63831 4.69874 4.84371 4.86061 5.02019 5.07655 5.24291 5.27167 5.34559 5.43272 5.45075 5.63227 5.69084 5.72144 5.75210 5.81302 5.88967 5.91098 6.01802 6.08423 6.09775 6.16566 6.23225 6.51214 6.55255 6.56992 6.65485 6.68461 6.91665 6.93697 7.61597 7.63519 7.82076 7.92033 8.01751 8.30751 8.49969 9.14420 9.79910 10.31085 11.23774 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.002282 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.752786 B =12266.136910 C =12564.425972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.049 3.951 4 C 0.137 3.863 5 N -0.570 5.570 6 C -0.247 4.247 7 H 0.060 0.940 8 C 0.019 3.981 9 N -0.888 5.888 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.288 1.288 14 C 0.139 3.861 15 C 0.096 3.904 16 N -0.723 5.723 17 C 0.514 3.486 18 O -0.528 6.528 19 C -0.122 4.122 20 H 0.107 0.893 21 C -0.107 4.107 22 C -0.034 4.034 23 C 0.208 3.792 24 N -0.492 5.492 25 C -0.033 4.033 26 C -0.054 4.054 27 N -0.454 5.454 28 C 0.114 3.886 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.040 0.960 35 H 0.110 0.890 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.393 0.607 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.169 0.831 47 H 0.175 0.825 48 H 0.093 0.907 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 11.570 -12.649 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.030 4.030 4 C 0.011 3.989 5 N -0.289 5.289 6 C -0.376 4.376 7 H 0.078 0.922 8 C -0.181 4.181 9 N -0.531 5.531 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.214 1.214 14 C 0.011 3.989 15 C -0.029 4.029 16 N -0.374 5.374 17 C 0.297 3.703 18 O -0.404 6.404 19 C -0.144 4.144 20 H 0.125 0.875 21 C -0.145 4.145 22 C -0.073 4.073 23 C -0.055 4.055 24 N -0.210 5.210 25 C -0.181 4.181 26 C -0.187 4.187 27 N -0.137 5.137 28 C -0.009 4.009 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.226 0.774 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.187 0.813 47 H 0.192 0.808 48 H 0.111 0.889 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.735 11.632 -11.966 16.704 hybrid contribution -1.595 -1.312 -0.106 2.068 sum -0.860 10.320 -12.072 15.905 Atomic orbital electron populations 1.22636 0.84271 1.01506 0.98389 1.88225 1.16520 1.27620 1.94805 1.23366 0.98696 0.84161 0.96805 1.21133 0.87665 0.96828 0.93294 1.43708 1.74330 1.02693 1.08167 1.18909 1.39284 0.81107 0.98344 0.92221 1.24983 0.96616 0.97853 0.98607 1.69953 1.35921 1.36118 1.11077 0.86280 0.77558 0.85265 0.77836 1.20279 1.22154 1.21438 1.21098 0.90699 0.94157 0.92933 1.22553 1.00569 0.93780 0.86017 1.46307 1.10372 1.52434 1.28286 1.20083 0.83066 0.80573 0.86567 1.90758 1.46551 1.57883 1.45206 1.21690 1.00511 0.99686 0.92534 0.87487 1.21535 0.93288 0.99534 1.00131 1.20256 1.01853 0.98655 0.86523 1.23402 0.94740 0.91114 0.96207 1.70069 1.24848 1.27592 0.98529 1.22361 0.99249 0.97028 0.99483 1.22598 1.07310 1.06015 0.82762 1.45352 1.33537 1.28042 1.06799 1.21902 1.00745 0.95327 0.82946 0.90717 0.95525 0.95320 0.95629 0.95599 0.94173 0.87254 0.93615 0.93298 0.94498 0.92093 0.90816 0.77378 0.88643 0.90412 0.88280 0.89112 0.81347 0.80759 0.88896 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.54 10.18 -35.23 -0.36 -7.89 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.14 3.03 5.73 -4.04 -0.02 3.01 16 5 N -0.57 -13.03 2.43 -173.24 -0.42 -13.45 16 6 C -0.25 -6.43 8.98 -15.06 -0.14 -6.57 16 7 H 0.06 1.57 7.93 -52.49 -0.42 1.16 16 8 C 0.02 0.53 4.95 -17.43 -0.09 0.44 16 9 N -0.89 -24.99 11.33 55.49 0.63 -24.36 16 10 Si 0.90 21.84 29.61 -169.99 -5.03 16.81 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 C 0.14 2.51 5.78 -4.05 -0.02 2.49 16 15 C 0.10 1.71 6.00 -4.05 -0.02 1.69 16 16 N -0.72 -9.33 5.46 -60.30 -0.33 -9.66 16 17 C 0.51 6.88 7.14 -10.98 -0.08 6.80 16 18 O -0.53 -9.61 15.83 5.56 0.09 -9.53 16 19 C -0.12 -1.14 2.54 -91.55 -0.23 -1.37 16 20 H 0.11 0.84 8.12 -51.93 -0.42 0.41 16 21 C -0.11 -1.01 4.68 -26.45 -0.12 -1.14 16 22 C -0.03 -0.30 6.33 -27.52 -0.17 -0.47 16 23 C 0.21 2.34 7.65 -155.25 -1.19 1.16 16 24 N -0.49 -6.36 11.24 -10.62 -0.12 -6.48 16 25 C -0.03 -0.36 11.87 -17.68 -0.21 -0.57 16 26 C -0.05 -0.50 11.64 -16.76 -0.20 -0.70 16 27 N -0.45 -4.53 3.13 -113.76 -0.36 -4.89 16 28 C 0.11 0.96 6.11 -3.92 -0.02 0.93 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.11 2.84 5.33 -51.93 -0.28 2.56 16 36 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.05 0.85 8.03 -51.93 -0.42 0.44 16 38 H 0.04 0.58 8.08 -51.93 -0.42 0.17 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.39 3.70 8.12 -40.82 -0.33 3.37 16 42 H 0.10 0.94 7.79 -51.93 -0.40 0.54 16 43 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 48 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 49 H 0.10 0.61 7.87 -51.92 -0.41 0.20 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -33.89 400.51 -9.18 -43.07 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.14 Total: 1.89 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.17 Total: 8.45 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.60 Total: -58.85 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.27 Total: -17.42 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.89 -9.18 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508047045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.166 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds