Wall clock time and date at job start Tue Mar 31 2020 19:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00215 * 2 1 4 4 C 1.53003 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47043 * 65.00385 * 4 3 2 6 6 C 1.36938 * 119.99692 * 269.99674 * 5 4 3 7 7 H 1.07997 * 120.00331 * 145.89209 * 6 5 4 8 8 C 1.38815 * 120.00140 * 325.89563 * 6 5 4 9 9 N 1.31626 * 119.99800 * 336.88155 * 8 6 5 10 10 Si 1.86798 * 120.00212 * 156.88174 * 8 6 5 11 11 H 1.48503 * 109.46974 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46882 * 119.99782 * 10 8 6 13 13 H 1.48491 * 109.47450 * 239.99854 * 10 8 6 14 14 C 1.46495 * 120.00209 * 90.00038 * 5 4 3 15 15 C 1.52994 * 109.47334 * 89.32172 * 14 5 4 16 16 N 1.46496 * 109.47255 * 179.97438 * 15 14 5 17 17 C 1.34778 * 119.99897 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00270 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99788 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.46533 * 59.99212 * 19 17 16 21 21 C 1.53157 * 109.46623 * 179.97438 * 19 17 16 22 22 C 1.53385 * 109.24844 * 189.47697 * 21 19 17 23 23 C 1.51043 * 108.21072 * 311.18008 * 22 21 19 24 24 N 1.30085 * 127.38548 * 196.02838 * 23 22 21 25 25 C 1.34295 * 109.20913 * 179.88838 * 24 23 22 26 26 C 1.34848 * 108.07248 * 0.02562 * 25 24 23 27 27 N 1.35417 * 123.98208 * 15.95294 * 23 22 21 28 28 C 1.46471 * 124.82699 * 0.13592 * 27 23 22 29 29 H 1.09003 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47024 * 299.99649 * 1 2 3 31 31 H 1.08995 * 109.47205 * 59.99669 * 1 2 3 32 32 H 1.08998 * 109.47058 * 59.99890 * 3 2 1 33 33 H 1.09002 * 109.47368 * 300.00404 * 3 2 1 34 34 H 1.09003 * 109.46640 * 185.00088 * 4 3 2 35 35 H 1.09001 * 109.47105 * 304.99880 * 4 3 2 36 36 H 0.96993 * 119.99804 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47156 * 209.32680 * 14 5 4 38 38 H 1.09003 * 109.46932 * 329.32013 * 14 5 4 39 39 H 1.08999 * 109.47414 * 300.00350 * 15 14 5 40 40 H 1.09003 * 109.47241 * 60.00031 * 15 14 5 41 41 H 0.97004 * 120.00228 * 0.02562 * 16 15 14 42 42 H 1.09004 * 109.50429 * 309.41405 * 21 19 17 43 43 H 1.08994 * 109.50706 * 69.55156 * 21 19 17 44 44 H 1.09003 * 109.73594 * 191.48309 * 22 21 19 45 45 H 1.09005 * 109.68916 * 70.84661 * 22 21 19 46 46 H 1.08000 * 125.96027 * 180.02562 * 25 24 23 47 47 H 1.08001 * 126.65545 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.58725 * 257.30158 * 28 27 23 49 49 H 1.09008 * 109.58536 * 136.89234 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0968 -0.7970 -1.3370 7 1 3.8748 -1.3026 -2.2651 8 6 4.5047 -1.5274 -0.2292 9 7 5.1957 -0.9427 0.7264 10 14 4.0731 -3.3398 -0.0948 11 1 3.2973 -3.7540 -1.2914 12 1 5.3207 -4.1410 -0.0126 13 1 3.2587 -3.5655 1.1262 14 6 4.2864 1.4007 -2.4148 15 6 5.7625 1.8008 -2.3751 16 7 6.0733 2.6366 -3.5375 17 6 7.3231 3.1098 -3.7123 18 8 8.1906 2.8434 -2.9076 19 6 7.6427 3.9700 -4.9077 20 1 7.0222 4.8659 -4.8868 21 6 9.1202 4.3715 -4.8673 22 6 9.3858 5.4314 -5.9438 23 6 8.7907 4.9435 -7.2435 24 7 9.0361 5.3888 -8.4409 25 6 8.3096 4.6913 -9.3292 26 6 7.5852 3.7777 -8.6518 27 7 7.8889 3.9373 -7.3325 28 6 7.3612 3.1836 -6.1928 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9785 2.1765 0.0889 35 1 3.8515 0.5681 0.8409 36 1 5.4811 -1.4531 1.5003 37 1 4.0858 0.8416 -3.3288 38 1 3.6662 2.2969 -2.3937 39 1 5.9630 2.3598 -1.4611 40 1 6.3826 0.9046 -2.3963 41 1 5.3795 2.8500 -4.1809 42 1 9.3592 4.7813 -3.8859 43 1 9.7406 3.4958 -5.0578 44 1 10.4599 5.5748 -6.0620 45 1 8.9181 6.3728 -5.6556 46 1 8.3063 4.8366 -10.3994 47 1 6.8979 3.0588 -9.0728 48 1 7.8500 2.2108 -6.1402 49 1 6.2860 3.0486 -6.3103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508047045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:33 Heat of formation + Delta-G solvation = -21.612529 kcal Electronic energy + Delta-G solvation = -29157.005124 eV Core-core repulsion = 25120.021384 eV Total energy + Delta-G solvation = -4036.983740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.28926 -40.97374 -38.88375 -37.57823 -37.09107 -35.73447 -34.19972 -33.33619 -31.66967 -30.71354 -29.50126 -28.81326 -27.10688 -25.94104 -25.36868 -24.12210 -23.30957 -22.32081 -21.89857 -21.35486 -20.00942 -18.73194 -18.26983 -17.99065 -17.25680 -16.94096 -16.76610 -16.64685 -16.44721 -16.30234 -15.70978 -15.44743 -15.33089 -15.23839 -15.03793 -14.89335 -14.67669 -14.56046 -14.21250 -13.79763 -13.56395 -13.40798 -12.91881 -12.89634 -12.77004 -12.72728 -12.44227 -12.35485 -12.25043 -12.19784 -12.04479 -11.93598 -11.74717 -11.50514 -11.02304 -10.93060 -10.58069 -10.46984 -10.30856 -10.07263 -9.27368 -8.58690 -7.76730 -5.32127 1.11431 1.45984 1.46473 1.51063 1.58413 1.81373 2.13481 2.18977 2.58695 3.23394 3.24773 3.37531 3.43017 3.47804 3.55343 3.79898 3.99923 4.10828 4.18056 4.30374 4.31419 4.34334 4.38192 4.47847 4.56398 4.57330 4.60282 4.64869 4.71447 4.75160 4.78383 4.85438 4.93659 4.94554 4.96316 4.98775 5.13428 5.15330 5.24549 5.35893 5.50068 5.73299 5.86140 5.86328 6.19990 6.46480 6.56015 6.69337 7.15543 7.21525 7.25707 7.92488 8.38655 9.20964 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.002282 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.752786 B =12266.136910 C =12564.425972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.057 3.943 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.238 4.238 7 H 0.056 0.944 8 C -0.030 4.030 9 N -0.918 5.918 10 Si 0.947 3.053 11 H -0.269 1.269 12 H -0.299 1.299 13 H -0.296 1.296 14 C 0.143 3.857 15 C 0.119 3.881 16 N -0.706 5.706 17 C 0.517 3.483 18 O -0.580 6.580 19 C -0.107 4.107 20 H 0.134 0.866 21 C -0.103 4.103 22 C -0.026 4.026 23 C 0.191 3.809 24 N -0.527 5.527 25 C -0.058 4.058 26 C -0.046 4.046 27 N -0.455 5.455 28 C 0.115 3.885 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.246 0.754 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.416 0.584 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.185 0.815 47 H 0.207 0.793 48 H 0.086 0.914 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 12.753 -14.641 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.021 4.021 4 C 0.007 3.993 5 N -0.306 5.306 6 C -0.369 4.369 7 H 0.073 0.927 8 C -0.226 4.226 9 N -0.563 5.563 10 Si 0.777 3.223 11 H -0.193 1.193 12 H -0.227 1.227 13 H -0.223 1.223 14 C 0.016 3.984 15 C -0.008 4.008 16 N -0.359 5.359 17 C 0.302 3.698 18 O -0.459 6.459 19 C -0.128 4.128 20 H 0.152 0.848 21 C -0.141 4.141 22 C -0.065 4.065 23 C -0.072 4.072 24 N -0.247 5.247 25 C -0.205 4.205 26 C -0.179 4.179 27 N -0.138 5.138 28 C -0.007 4.007 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.253 0.747 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.202 0.798 47 H 0.224 0.776 48 H 0.104 0.896 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.484 12.840 -14.017 19.067 hybrid contribution -0.938 -1.625 0.436 1.926 sum -2.422 11.215 -13.581 17.778 Atomic orbital electron populations 1.22817 0.81636 1.02556 1.00094 1.88146 1.19534 1.28805 1.95192 1.23182 0.96335 0.83991 0.98611 1.21048 0.90059 0.96381 0.91771 1.43872 1.74867 1.02321 1.09500 1.19057 1.37144 0.82951 0.97714 0.92685 1.25510 0.97575 1.00512 0.99028 1.70083 1.37837 1.36873 1.11554 0.85540 0.76899 0.82353 0.77526 1.19346 1.22683 1.22290 1.21186 0.90821 0.94918 0.91467 1.21912 0.99749 0.92297 0.86863 1.45963 1.11219 1.51390 1.27313 1.20724 0.82177 0.79898 0.86959 1.90749 1.48081 1.59736 1.47381 1.21573 1.00716 0.99672 0.90860 0.84786 1.21465 0.93304 0.99189 1.00163 1.20260 1.02205 0.98785 0.85250 1.23743 0.95273 0.91710 0.96471 1.70026 1.26077 1.29011 0.99592 1.22794 0.99726 0.97614 1.00372 1.23116 1.06834 1.05670 0.82271 1.45444 1.33256 1.27758 1.07375 1.21979 1.02466 0.94419 0.81868 0.90146 0.93714 0.93557 0.93645 0.93650 0.92962 0.91257 0.94437 0.92128 0.91105 0.94677 0.95265 0.74669 0.89177 0.92040 0.87959 0.87478 0.79762 0.77619 0.89575 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.34 10.18 -148.98 -1.52 -17.86 16 3 C 0.06 2.09 6.28 71.98 0.45 2.55 16 4 C 0.13 5.85 5.73 86.38 0.49 6.34 16 5 N -0.59 -26.43 2.43 -702.01 -1.71 -28.14 16 6 C -0.24 -12.42 8.98 84.03 0.75 -11.66 16 7 H 0.06 2.88 7.93 -2.91 -0.02 2.85 16 8 C -0.03 -1.63 4.95 84.86 0.42 -1.21 16 9 N -0.92 -53.47 11.33 21.65 0.25 -53.22 16 10 Si 0.95 45.61 29.61 68.60 2.03 47.64 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 13 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 14 C 0.14 4.87 5.78 86.38 0.50 5.37 16 15 C 0.12 4.19 6.00 86.38 0.52 4.71 16 16 N -0.71 -16.82 5.46 -463.07 -2.53 -19.35 16 17 C 0.52 13.22 7.14 87.66 0.63 13.84 16 18 O -0.58 -21.46 15.83 -3.04 -0.05 -21.51 16 19 C -0.11 -1.74 2.54 -11.40 -0.03 -1.77 16 20 H 0.13 1.57 8.12 -2.39 -0.02 1.55 16 21 C -0.10 -1.86 4.68 30.78 0.14 -1.71 16 22 C -0.03 -0.42 6.33 30.09 0.19 -0.23 16 23 C 0.19 3.99 7.65 138.24 1.06 5.04 16 24 N -0.53 -13.04 11.24 -187.52 -2.11 -15.15 16 25 C -0.06 -1.15 11.87 83.54 0.99 -0.16 16 26 C -0.05 -0.73 11.64 83.22 0.97 0.24 16 27 N -0.46 -7.91 3.13 -513.82 -1.61 -9.53 16 28 C 0.11 1.59 6.11 86.47 0.53 2.12 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 2.08 8.07 -2.39 -0.02 2.07 16 35 H 0.07 3.69 5.33 -2.39 -0.01 3.67 16 36 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.06 1.95 8.03 -2.39 -0.02 1.93 16 38 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.42 6.21 8.12 -92.71 -0.75 5.46 16 42 H 0.09 1.74 7.79 -2.38 -0.02 1.72 16 43 H 0.06 1.31 8.12 -2.39 -0.02 1.29 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 47 H 0.21 1.76 8.06 -2.91 -0.02 1.73 16 48 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 49 H 0.13 1.01 7.87 -2.38 -0.02 0.99 16 Total: -1.00 -77.15 400.51 1.81 -75.34 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.19 Total: 16.30 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 8.86 Total: 25.47 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -7.71 Total: -125.38 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -1.56 Total: -39.37 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -77.15 1.81 -75.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508047045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.728 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds