Wall clock time and date at job start Tue Mar 31 2020 19:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99965 * 2 1 4 4 N 1.46502 * 109.47397 * 125.00057 * 3 2 1 5 5 C 1.36739 * 127.13781 * 270.02969 * 4 3 2 6 6 C 1.50702 * 126.34664 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47202 * 90.00205 * 6 5 4 8 8 C 1.50702 * 109.47202 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99901 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00054 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99689 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99993 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46997 * 89.99931 * 12 10 8 14 14 H 1.48502 * 109.47053 * 209.99796 * 12 10 8 15 15 H 1.48497 * 109.47094 * 329.99734 * 12 10 8 16 16 N 1.30292 * 107.31000 * 179.97438 * 5 4 3 17 17 N 1.28537 * 110.05038 * 359.72649 * 16 5 4 18 18 C 1.31215 * 109.85510 * 0.45208 * 17 16 5 19 19 N 1.38582 * 126.47074 * 179.82011 * 18 17 16 20 20 C 1.48564 * 110.99961 * 359.69336 * 19 18 17 21 21 C 1.54380 * 104.59736 * 159.03893 * 20 19 18 22 22 H 1.08992 * 110.32366 * 95.04073 * 21 20 19 23 23 O 1.42901 * 110.32088 * 217.25166 * 21 20 19 24 24 C 1.42898 * 113.99586 * 265.63168 * 23 21 20 25 25 C 1.54259 * 105.05727 * 336.14564 * 21 20 19 26 26 H 1.09002 * 110.32223 * 118.89718 * 25 21 20 27 27 O 1.42899 * 110.32371 * 241.00135 * 25 21 20 28 28 C 1.42896 * 114.00162 * 208.57554 * 27 25 21 29 29 C 1.48559 * 111.00055 * 115.10774 * 19 18 17 30 30 H 1.07993 * 119.99902 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99652 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.00427 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47172 * 5.00281 * 3 2 1 34 34 H 1.08997 * 109.47633 * 244.99968 * 3 2 1 35 35 H 1.09003 * 109.46891 * 210.00242 * 6 5 4 36 36 H 1.09002 * 109.47107 * 329.99780 * 6 5 4 37 37 H 1.09003 * 109.47228 * 299.99831 * 7 6 5 38 38 H 1.08997 * 109.47363 * 60.00260 * 7 6 5 39 39 H 0.97006 * 119.99775 * 179.97438 * 11 10 8 40 40 H 1.09005 * 110.41054 * 40.25631 * 20 19 18 41 41 H 1.09006 * 110.41081 * 277.81860 * 20 19 18 42 42 H 1.08998 * 109.47345 * 180.02562 * 24 23 21 43 43 H 1.08992 * 109.47562 * 300.00510 * 24 23 21 44 44 H 1.09000 * 109.47153 * 60.00979 * 24 23 21 45 45 H 1.09007 * 109.47199 * 180.02562 * 28 27 25 46 46 H 1.09000 * 109.47151 * 299.99500 * 28 27 25 47 47 H 1.09000 * 109.47371 * 60.00203 * 28 27 25 48 48 H 1.09002 * 110.41113 * 82.17983 * 29 19 18 49 49 H 1.09011 * 110.41135 * 319.74256 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7445 1.7930 2.3944 6 6 1.4471 2.3757 2.8926 7 6 0.5681 1.2568 3.4549 8 6 -0.7296 1.8395 3.9526 9 1 -0.9092 2.9017 3.8759 10 6 -1.6875 1.0165 4.5058 11 7 -2.8197 1.5251 4.9406 12 14 -1.3766 -0.8206 4.6392 13 1 -0.7250 -1.1192 5.9398 14 1 -2.6680 -1.5487 4.5537 15 1 -0.4895 -1.2542 3.5300 16 7 3.8363 1.6342 3.0875 17 7 4.7496 1.1028 2.3556 18 6 4.2885 0.9015 1.1438 19 7 4.9835 0.3502 0.0790 20 6 6.3729 0.0021 0.4732 21 6 6.8219 -1.0455 -0.5681 22 1 7.3677 -0.5634 -1.3790 23 8 7.6329 -2.0455 0.0519 24 6 9.0365 -1.7918 -0.0356 25 6 5.5145 -1.6691 -1.0985 26 1 5.4186 -1.4930 -2.1700 27 8 5.4853 -3.0708 -0.8221 28 6 4.7226 -3.8324 -1.7603 29 6 4.3856 -0.9458 -0.3332 30 1 -0.5399 0.9353 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4027 -0.9313 35 1 1.6535 3.1045 3.6765 36 1 0.9287 2.8657 2.0684 37 1 0.3618 0.5281 2.6710 38 1 1.0865 0.7669 4.2791 39 1 -3.4939 0.9461 5.3295 40 1 6.3876 -0.4271 1.4751 41 1 7.0133 0.8830 0.4267 42 1 9.5825 -2.5959 0.4578 43 1 9.3321 -1.7420 -1.0835 44 1 9.2656 -0.8442 0.4520 45 1 4.7495 -4.8857 -1.4806 46 1 3.6902 -3.4827 -1.7584 47 1 5.1459 -3.7100 -2.7573 48 1 3.5295 -0.7786 -0.9869 49 1 4.0893 -1.5234 0.5425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520332065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:03 Heat of formation + Delta-G solvation = 32.894213 kcal Electronic energy + Delta-G solvation = -30494.119008 eV Core-core repulsion = 26459.498857 eV Total energy + Delta-G solvation = -4034.620150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.76388 -40.09725 -37.44821 -37.05863 -36.17448 -34.11130 -32.66491 -32.11460 -30.89201 -28.93347 -28.40796 -26.93751 -26.69775 -26.43006 -25.39351 -23.11084 -21.82472 -21.31916 -20.86656 -20.04311 -19.52372 -18.00422 -17.45635 -16.93604 -16.50287 -16.16059 -15.93792 -15.52445 -15.37862 -15.28546 -14.70930 -14.56677 -14.24764 -14.20945 -14.01125 -13.66034 -13.40137 -13.33720 -12.88515 -12.70096 -12.41956 -12.23731 -12.04819 -11.88403 -11.63889 -11.53859 -11.47300 -11.30262 -11.16606 -11.10175 -10.54915 -10.37109 -10.15531 -10.03972 -9.92617 -9.85297 -9.80913 -9.59479 -9.45832 -9.27302 -8.59269 -8.15741 -6.10894 -4.09798 1.81571 2.08428 2.59290 3.08493 3.23892 3.27579 3.35214 3.38942 3.53423 3.85275 4.02457 4.15064 4.40122 4.57169 4.62709 4.76783 4.78950 4.87087 4.88865 4.98584 5.02914 5.04389 5.06598 5.11694 5.19058 5.22909 5.25045 5.32908 5.39324 5.43697 5.46643 5.48743 5.53835 5.73983 5.85384 5.97804 6.19450 6.26449 6.32677 6.48901 6.49727 6.59155 6.69173 6.76702 7.01479 7.16079 7.25404 7.31643 7.68966 8.43636 8.92482 9.08513 9.51313 11.02025 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003260 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.439471 B = 8586.364992 C = 9178.931918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.205 4.205 3 C 0.142 3.858 4 N -0.472 5.472 5 C 0.212 3.788 6 C -0.021 4.021 7 C -0.004 4.004 8 C -0.520 4.520 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.900 5.900 12 Si 0.875 3.125 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.267 1.267 16 N -0.294 5.294 17 N -0.316 5.316 18 C 0.325 3.675 19 N -0.420 5.420 20 C 0.030 3.970 21 C 0.087 3.913 22 H 0.085 0.915 23 O -0.355 6.355 24 C 0.026 3.974 25 C 0.089 3.911 26 H 0.085 0.915 27 O -0.355 6.355 28 C 0.026 3.974 29 C 0.008 3.992 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.096 0.904 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.312 -6.872 -19.837 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.224 4.224 3 C 0.019 3.981 4 N -0.166 5.166 5 C -0.055 4.055 6 C -0.061 4.061 7 C -0.043 4.043 8 C -0.558 4.558 9 H 0.093 0.907 10 C -0.129 4.129 11 N -0.538 5.538 12 Si 0.702 3.298 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.192 1.192 16 N -0.132 5.132 17 N -0.160 5.160 18 C -0.032 4.032 19 N -0.146 5.146 20 C -0.098 4.098 21 C 0.027 3.973 22 H 0.103 0.897 23 O -0.272 6.272 24 C -0.070 4.070 25 C 0.030 3.970 26 H 0.103 0.897 27 O -0.272 6.272 28 C -0.071 4.071 29 C -0.120 4.120 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.114 0.886 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.132 -6.749 -18.774 26.959 hybrid contribution -0.936 -1.240 -0.727 1.715 sum 17.196 -7.989 -19.501 27.200 Atomic orbital electron populations 1.24049 0.95435 1.03173 0.94271 1.23011 0.96502 0.97449 1.05404 1.20928 0.91767 0.97885 0.87504 1.46246 1.10225 1.48030 1.12066 1.25599 0.99363 1.00182 0.80364 1.20224 0.85696 0.99588 1.00605 1.19561 0.94862 0.93702 0.96173 1.21002 0.98452 0.96283 1.40092 0.90662 1.24934 0.94899 0.98423 0.94662 1.69901 1.07110 1.35647 1.41178 0.86856 0.77493 0.86098 0.79342 1.20102 1.21339 1.19198 1.74028 0.97392 1.17170 1.24612 1.74507 1.24483 1.18956 0.98061 1.22504 0.84114 1.04147 0.92406 1.62084 1.02976 1.22305 1.27204 1.23589 0.87016 0.99105 1.00055 1.23008 0.91268 0.88562 0.94444 0.89731 1.88116 1.16216 1.45137 1.77746 1.22868 0.81941 1.01751 1.00460 1.22974 0.93075 0.82424 0.98566 0.89722 1.88128 1.71791 1.16295 1.50962 1.22878 0.94871 0.96846 0.92512 1.23983 0.98358 0.88687 1.00957 0.87237 0.87762 0.87233 0.87805 0.88172 0.88764 0.90777 0.96308 0.96338 0.92631 0.89508 0.88585 0.89430 0.94085 0.93807 0.89358 0.94017 0.93928 0.88613 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 13.65 29.01 0.40 -1.26 16 2 C -0.20 -2.56 8.93 -36.03 -0.32 -2.88 16 3 C 0.14 1.75 5.75 -5.19 -0.03 1.72 16 4 N -0.47 -7.64 2.79 -115.37 -0.32 -7.96 16 5 C 0.21 4.09 7.32 -154.02 -1.13 2.97 16 6 C -0.02 -0.42 5.53 -27.88 -0.15 -0.57 16 7 C 0.00 -0.10 4.02 -27.88 -0.11 -0.22 16 8 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 16 9 H 0.08 2.17 7.99 -52.48 -0.42 1.75 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 12 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 16 N -0.29 -6.26 12.18 32.99 0.40 -5.86 16 17 N -0.32 -6.21 10.98 30.31 0.33 -5.88 16 18 C 0.33 5.37 6.99 -318.88 -2.23 3.14 16 19 N -0.42 -5.39 5.42 -170.08 -0.92 -6.32 16 20 C 0.03 0.36 5.84 -2.18 -0.01 0.35 16 21 C 0.09 0.85 3.54 -25.35 -0.09 0.76 16 22 H 0.08 0.61 7.82 -51.93 -0.41 0.21 16 23 O -0.36 -3.98 9.48 -56.60 -0.54 -4.51 16 24 C 0.03 0.20 10.85 101.05 1.10 1.30 16 25 C 0.09 0.86 3.53 -25.35 -0.09 0.77 16 26 H 0.08 0.60 7.83 -51.93 -0.41 0.20 16 27 O -0.35 -3.96 9.49 -56.60 -0.54 -4.49 16 28 C 0.03 0.19 10.86 101.05 1.10 1.29 16 29 C 0.01 0.09 4.85 -2.18 -0.01 0.08 16 30 H 0.11 1.35 7.84 -52.49 -0.41 0.94 16 31 H 0.10 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.11 1.35 6.27 -52.48 -0.33 1.02 16 33 H 0.10 1.21 6.90 -51.93 -0.36 0.85 16 34 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.07 1.30 7.27 -51.93 -0.38 0.92 16 37 H 0.02 0.43 6.45 -51.93 -0.33 0.10 16 38 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 40 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.24 8.11 -51.93 -0.42 -0.18 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.04 0.25 8.10 -51.93 -0.42 -0.17 16 48 H 0.10 0.92 5.97 -51.93 -0.31 0.61 16 49 H 0.07 1.00 7.91 -51.92 -0.41 0.59 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -34.63 395.97 -9.46 -44.08 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.93 Total: -0.62 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.02 Total: -5.14 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.26 Total: -52.27 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.63 -9.46 -44.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520332065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.978 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds