Wall clock time and date at job start Tue Mar 31 2020 19:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99965 * 2 1 4 4 N 1.46502 * 109.47397 * 125.00057 * 3 2 1 5 5 C 1.36739 * 127.13781 * 270.02969 * 4 3 2 6 6 C 1.50702 * 126.34664 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47202 * 90.00205 * 6 5 4 8 8 C 1.50702 * 109.47202 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99901 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00054 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99689 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99993 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46997 * 89.99931 * 12 10 8 14 14 H 1.48502 * 109.47053 * 209.99796 * 12 10 8 15 15 H 1.48497 * 109.47094 * 329.99734 * 12 10 8 16 16 N 1.30292 * 107.31000 * 179.97438 * 5 4 3 17 17 N 1.28537 * 110.05038 * 359.72649 * 16 5 4 18 18 C 1.31215 * 109.85510 * 0.45208 * 17 16 5 19 19 N 1.38582 * 126.47074 * 179.82011 * 18 17 16 20 20 C 1.48564 * 110.99961 * 359.69336 * 19 18 17 21 21 C 1.54380 * 104.59736 * 159.03893 * 20 19 18 22 22 H 1.08992 * 110.32366 * 95.04073 * 21 20 19 23 23 O 1.42901 * 110.32088 * 217.25166 * 21 20 19 24 24 C 1.42898 * 113.99586 * 265.63168 * 23 21 20 25 25 C 1.54259 * 105.05727 * 336.14564 * 21 20 19 26 26 H 1.09002 * 110.32223 * 118.89718 * 25 21 20 27 27 O 1.42899 * 110.32371 * 241.00135 * 25 21 20 28 28 C 1.42896 * 114.00162 * 208.57554 * 27 25 21 29 29 C 1.48559 * 111.00055 * 115.10774 * 19 18 17 30 30 H 1.07993 * 119.99902 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99652 * 180.02562 * 1 2 3 32 32 H 1.08005 * 120.00427 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47172 * 5.00281 * 3 2 1 34 34 H 1.08997 * 109.47633 * 244.99968 * 3 2 1 35 35 H 1.09003 * 109.46891 * 210.00242 * 6 5 4 36 36 H 1.09002 * 109.47107 * 329.99780 * 6 5 4 37 37 H 1.09003 * 109.47228 * 299.99831 * 7 6 5 38 38 H 1.08997 * 109.47363 * 60.00260 * 7 6 5 39 39 H 0.97006 * 119.99775 * 179.97438 * 11 10 8 40 40 H 1.09005 * 110.41054 * 40.25631 * 20 19 18 41 41 H 1.09006 * 110.41081 * 277.81860 * 20 19 18 42 42 H 1.08998 * 109.47345 * 180.02562 * 24 23 21 43 43 H 1.08992 * 109.47562 * 300.00510 * 24 23 21 44 44 H 1.09000 * 109.47153 * 60.00979 * 24 23 21 45 45 H 1.09007 * 109.47199 * 180.02562 * 28 27 25 46 46 H 1.09000 * 109.47151 * 299.99500 * 28 27 25 47 47 H 1.09000 * 109.47371 * 60.00203 * 28 27 25 48 48 H 1.09002 * 110.41113 * 82.17983 * 29 19 18 49 49 H 1.09011 * 110.41135 * 319.74256 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7445 1.7930 2.3944 6 6 1.4471 2.3757 2.8926 7 6 0.5681 1.2568 3.4549 8 6 -0.7296 1.8395 3.9526 9 1 -0.9092 2.9017 3.8759 10 6 -1.6875 1.0165 4.5058 11 7 -2.8197 1.5251 4.9406 12 14 -1.3766 -0.8206 4.6392 13 1 -0.7250 -1.1192 5.9398 14 1 -2.6680 -1.5487 4.5537 15 1 -0.4895 -1.2542 3.5300 16 7 3.8363 1.6342 3.0875 17 7 4.7496 1.1028 2.3556 18 6 4.2885 0.9015 1.1438 19 7 4.9835 0.3502 0.0790 20 6 6.3729 0.0021 0.4732 21 6 6.8219 -1.0455 -0.5681 22 1 7.3677 -0.5634 -1.3790 23 8 7.6329 -2.0455 0.0519 24 6 9.0365 -1.7918 -0.0356 25 6 5.5145 -1.6691 -1.0985 26 1 5.4186 -1.4930 -2.1700 27 8 5.4853 -3.0708 -0.8221 28 6 4.7226 -3.8324 -1.7603 29 6 4.3856 -0.9458 -0.3332 30 1 -0.5399 0.9353 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4027 -0.9313 35 1 1.6535 3.1045 3.6765 36 1 0.9287 2.8657 2.0684 37 1 0.3618 0.5281 2.6710 38 1 1.0865 0.7669 4.2791 39 1 -3.4939 0.9461 5.3295 40 1 6.3876 -0.4271 1.4751 41 1 7.0133 0.8830 0.4267 42 1 9.5825 -2.5959 0.4578 43 1 9.3321 -1.7420 -1.0835 44 1 9.2656 -0.8442 0.4520 45 1 4.7495 -4.8857 -1.4806 46 1 3.6902 -3.4827 -1.7584 47 1 5.1459 -3.7100 -2.7573 48 1 3.5295 -0.7786 -0.9869 49 1 4.0893 -1.5234 0.5425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520332065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:02 Heat of formation + Delta-G solvation = 11.603450 kcal Electronic energy + Delta-G solvation = -30495.042244 eV Core-core repulsion = 26459.498857 eV Total energy + Delta-G solvation = -4035.543387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.12405 -40.94663 -38.16170 -37.97783 -37.34842 -35.91746 -34.01515 -33.75730 -32.09774 -29.93071 -29.68638 -27.96558 -27.38966 -27.28234 -26.96955 -24.09462 -23.45085 -22.41147 -22.05183 -21.31473 -20.63379 -19.15573 -18.80485 -18.25011 -17.72898 -17.34246 -16.65582 -16.39577 -16.32247 -16.23315 -16.08576 -15.63285 -15.53622 -15.24656 -15.06100 -14.89571 -14.75233 -14.65645 -14.51355 -13.68566 -13.60517 -13.29059 -13.16795 -12.99343 -12.76166 -12.63180 -12.59610 -12.44782 -12.30689 -12.16127 -12.05345 -11.90364 -11.82090 -11.60960 -11.42616 -11.22532 -10.84389 -10.80117 -10.70916 -10.54607 -10.50259 -9.51682 -8.30614 -6.33324 0.58355 0.91087 1.30060 1.34211 1.42642 1.48919 1.70452 2.32080 2.33459 2.89030 2.91042 3.05294 3.19624 3.29536 3.46701 3.64921 3.78518 3.89895 3.93395 4.00677 4.03933 4.14003 4.17547 4.36147 4.39309 4.46605 4.50595 4.55186 4.55455 4.59348 4.62420 4.66120 4.70518 4.78921 4.80133 4.87748 4.90260 4.91440 4.93592 5.16894 5.26748 5.37442 5.42426 5.52490 5.60198 5.60837 6.04852 6.05990 6.24652 6.36589 6.73263 7.30968 7.66681 8.85361 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.003260 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.439471 B = 8586.364992 C = 9178.931918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.206 4.206 3 C 0.134 3.866 4 N -0.466 5.466 5 C 0.202 3.798 6 C -0.010 4.010 7 C 0.006 3.994 8 C -0.520 4.520 9 H 0.049 0.951 10 C 0.020 3.980 11 N -0.942 5.942 12 Si 0.932 3.068 13 H -0.280 1.280 14 H -0.278 1.278 15 H -0.253 1.253 16 N -0.330 5.330 17 N -0.352 5.352 18 C 0.342 3.658 19 N -0.408 5.408 20 C 0.028 3.972 21 C 0.090 3.910 22 H 0.118 0.882 23 O -0.383 6.383 24 C 0.021 3.979 25 C 0.091 3.909 26 H 0.121 0.879 27 O -0.383 6.383 28 C 0.020 3.980 29 C 0.011 3.989 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.027 0.973 38 H 0.000 1.000 39 H 0.267 0.733 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.117 0.883 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.415 -8.063 -23.015 30.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.224 4.224 3 C 0.013 3.987 4 N -0.159 5.159 5 C -0.067 4.067 6 C -0.050 4.050 7 C -0.032 4.032 8 C -0.558 4.558 9 H 0.067 0.933 10 C -0.178 4.178 11 N -0.583 5.583 12 Si 0.757 3.243 13 H -0.206 1.206 14 H -0.203 1.203 15 H -0.177 1.177 16 N -0.168 5.168 17 N -0.196 5.196 18 C -0.016 4.016 19 N -0.134 5.134 20 C -0.099 4.099 21 C 0.031 3.969 22 H 0.136 0.864 23 O -0.301 6.301 24 C -0.075 4.075 25 C 0.032 3.968 26 H 0.138 0.862 27 O -0.301 6.301 28 C -0.076 4.076 29 C -0.117 4.117 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.149 0.851 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.046 0.954 38 H 0.018 0.982 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.244 -7.947 -21.982 30.277 hybrid contribution -1.231 -0.850 0.214 1.511 sum 18.013 -8.796 -21.769 29.593 Atomic orbital electron populations 1.24188 0.95638 1.03611 0.94182 1.23036 0.96478 0.97547 1.05387 1.21312 0.91830 0.98259 0.87291 1.46374 1.10536 1.47076 1.11938 1.25280 0.98705 1.01086 0.81671 1.19977 0.85704 0.98167 1.01163 1.19375 0.93406 0.94757 0.95702 1.21258 0.99882 0.95249 1.39436 0.93272 1.25698 0.94696 1.02792 0.94586 1.70019 1.08238 1.37372 1.42638 0.85930 0.77880 0.81064 0.79392 1.20569 1.20296 1.17681 1.73928 0.98453 1.18221 1.26206 1.74431 1.24980 1.20668 0.99553 1.22876 0.84126 1.02334 0.92287 1.62216 1.03175 1.22995 1.24967 1.23653 0.86721 1.00229 0.99311 1.23118 0.91759 0.87828 0.94206 0.86404 1.88084 1.17946 1.45779 1.78292 1.23041 0.80370 1.02130 1.01980 1.23112 0.91915 0.81752 1.00028 0.86159 1.88100 1.72386 1.17056 1.52542 1.23055 0.95022 0.96629 0.92937 1.24064 0.99986 0.87423 1.00199 0.87154 0.87164 0.87005 0.86865 0.85140 0.89539 0.88514 0.95426 0.98192 0.92411 0.92915 0.87696 0.89054 0.91973 0.93467 0.89169 0.93407 0.91829 0.86469 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 13.65 67.78 0.93 -2.25 16 2 C -0.21 -4.62 8.93 25.64 0.23 -4.39 16 3 C 0.13 2.94 5.75 85.63 0.49 3.43 16 4 N -0.47 -14.41 2.79 -518.92 -1.45 -15.86 16 5 C 0.20 7.70 7.32 137.64 1.01 8.71 16 6 C -0.01 -0.41 5.53 29.85 0.16 -0.24 16 7 C 0.01 0.29 4.02 29.85 0.12 0.41 16 8 C -0.52 -28.63 9.66 25.60 0.25 -28.38 16 9 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 10 C 0.02 1.15 5.47 84.65 0.46 1.62 16 11 N -0.94 -57.32 13.96 21.45 0.30 -57.03 16 12 Si 0.93 44.44 27.47 68.60 1.88 46.33 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 15 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 16 N -0.33 -14.25 12.18 -49.54 -0.60 -14.85 16 17 N -0.35 -14.01 10.98 -58.01 -0.64 -14.65 16 18 C 0.34 10.97 6.99 260.11 1.82 12.79 16 19 N -0.41 -9.70 5.42 -692.02 -3.75 -13.45 16 20 C 0.03 0.65 5.84 86.45 0.50 1.15 16 21 C 0.09 1.53 3.54 31.49 0.11 1.64 16 22 H 0.12 1.22 7.82 -2.39 -0.02 1.20 16 23 O -0.38 -8.00 9.48 -128.55 -1.22 -9.22 16 24 C 0.02 0.27 10.85 113.37 1.23 1.50 16 25 C 0.09 1.48 3.53 31.49 0.11 1.59 16 26 H 0.12 1.12 7.83 -2.39 -0.02 1.10 16 27 O -0.38 -7.74 9.49 -128.55 -1.22 -8.96 16 28 C 0.02 0.25 10.86 113.37 1.23 1.48 16 29 C 0.01 0.22 4.85 86.45 0.42 0.64 16 30 H 0.11 2.50 7.84 -2.91 -0.02 2.48 16 31 H 0.11 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.11 2.47 6.27 -2.91 -0.02 2.45 16 33 H 0.11 2.31 6.90 -2.39 -0.02 2.30 16 34 H 0.13 2.09 8.06 -2.39 -0.02 2.07 16 35 H 0.09 3.48 8.14 -2.39 -0.02 3.47 16 36 H 0.10 3.28 7.27 -2.39 -0.02 3.26 16 37 H 0.03 1.23 6.45 -2.39 -0.02 1.22 16 38 H 0.00 -0.02 7.57 -2.39 -0.02 -0.03 16 39 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 40 H 0.05 1.59 7.36 -2.38 -0.02 1.57 16 41 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 0.55 8.11 -2.39 -0.02 0.53 16 44 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 45 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.06 0.52 8.10 -2.39 -0.02 0.50 16 48 H 0.12 1.85 5.97 -2.39 -0.01 1.83 16 49 H 0.04 1.05 7.91 -2.38 -0.02 1.03 16 Total: -1.00 -76.78 395.97 3.26 -73.52 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.88 Total: 14.48 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 9.08 Total: -0.31 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -6.14 Total: -115.84 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -2.44 Total: -18.18 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -76.78 3.26 -73.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520332065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.124 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds