Wall clock time and date at job start Tue Mar 31 2020 19:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86796 * 120.00390 * 2 1 4 4 H 1.48501 * 109.47289 * 271.97610 * 3 2 1 5 5 H 1.48503 * 109.46836 * 31.97251 * 3 2 1 6 6 H 1.48503 * 109.47099 * 151.97467 * 3 2 1 7 7 C 1.38813 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 339.43940 * 7 2 1 9 9 N 1.36939 * 120.00164 * 159.44386 * 7 2 1 10 10 C 1.47077 * 120.88016 * 333.51092 * 9 7 2 11 11 C 1.53240 * 108.52155 * 231.16117 * 10 9 7 12 12 N 1.46901 * 109.33993 * 306.16962 * 11 10 9 13 13 C 1.46899 * 111.00000 * 187.25486 * 12 11 10 14 14 C 1.52991 * 109.47177 * 170.00288 * 13 12 11 15 15 C 1.53005 * 109.47127 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.46964 * 179.97438 * 15 14 13 17 17 C 1.34775 * 119.99799 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00047 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00030 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47510 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47673 * 180.02562 * 20 19 17 22 22 C 1.34426 * 126.82279 * 124.99581 * 21 20 19 23 23 N 1.30840 * 108.07327 * 179.97438 * 22 21 20 24 24 C 1.33237 * 109.82960 * 0.02562 * 23 22 21 25 25 N 1.30718 * 108.94646 * 359.75105 * 24 23 22 26 26 C 1.46899 * 111.26797 * 63.10526 * 12 11 10 27 27 C 1.47083 * 120.88272 * 153.48777 * 9 7 2 28 28 H 0.97003 * 120.00107 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.63033 * 111.44843 * 10 9 7 30 30 H 1.09005 * 109.78963 * 350.96745 * 10 9 7 31 31 H 1.08995 * 109.49145 * 186.20865 * 11 10 9 32 32 H 1.08999 * 109.49287 * 66.12962 * 11 10 9 33 33 H 1.09002 * 109.47263 * 49.99788 * 13 12 11 34 34 H 1.09009 * 109.46720 * 290.00033 * 13 12 11 35 35 H 1.09002 * 109.47432 * 59.99604 * 14 13 12 36 36 H 1.09009 * 109.47087 * 299.99520 * 14 13 12 37 37 H 1.08994 * 109.47121 * 59.99877 * 15 14 13 38 38 H 1.08995 * 109.47110 * 299.99258 * 15 14 13 39 39 H 0.97002 * 120.00145 * 0.27548 * 16 15 14 40 40 H 1.09000 * 109.47395 * 299.99866 * 19 17 16 41 41 H 1.09002 * 109.47194 * 59.99775 * 19 17 16 42 42 H 1.09009 * 109.46711 * 300.00151 * 20 19 17 43 43 H 1.09002 * 109.47007 * 59.99745 * 20 19 17 44 44 H 1.07995 * 125.96555 * 0.02562 * 22 21 20 45 45 H 1.07999 * 125.52969 * 179.97438 * 24 23 22 46 46 H 1.09004 * 109.49289 * 56.85359 * 26 12 11 47 47 H 1.08996 * 109.49291 * 176.93526 * 26 12 11 48 48 H 1.09007 * 109.62529 * 248.54820 * 27 9 7 49 49 H 1.08999 * 109.62754 * 9.12612 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4559 2.0705 -1.3992 5 1 1.4691 2.6402 0.7414 6 1 3.5680 1.4283 0.6579 7 6 2.0101 -1.2022 0.0005 8 1 1.5217 -2.1076 0.3294 9 7 3.3141 -1.2402 -0.4158 10 6 3.8307 -0.2486 -1.3713 11 6 4.5271 -0.9923 -2.5159 12 7 5.5362 -1.9042 -1.9608 13 6 6.3439 -2.5086 -3.0286 14 6 7.5324 -3.2490 -2.4122 15 6 8.3733 -3.8790 -3.5243 16 7 9.5117 -4.5875 -2.9340 17 6 10.3948 -5.2240 -3.7287 18 8 10.2467 -5.2108 -4.9324 19 6 11.5654 -5.9532 -3.1215 20 6 12.4057 -6.5843 -4.2335 21 7 13.5435 -7.2937 -3.6433 22 6 13.8747 -8.5829 -3.8316 23 7 14.9523 -8.8314 -3.1323 24 6 15.3363 -7.7307 -2.4871 25 7 14.5076 -6.7607 -2.7723 26 6 4.9159 -2.9375 -1.1208 27 6 4.2354 -2.2735 0.0810 28 1 -0.4850 0.8401 -0.0004 29 1 4.5453 0.4047 -0.8707 30 1 3.0073 0.3454 -1.7681 31 1 5.0112 -0.2725 -3.1759 32 1 3.7903 -1.5647 -3.0793 33 1 6.7087 -1.7269 -3.6950 34 1 5.7315 -3.2113 -3.5938 35 1 7.1676 -4.0306 -1.7458 36 1 8.1447 -2.5462 -1.8470 37 1 8.7380 -3.0977 -4.1910 38 1 7.7608 -4.5818 -4.0891 39 1 9.6274 -4.6021 -1.9711 40 1 12.1782 -5.2504 -2.5570 41 1 11.2006 -6.7344 -2.4545 42 1 11.7926 -7.2873 -4.7977 43 1 12.7705 -5.8034 -4.9009 44 1 13.3444 -9.2898 -4.4523 45 1 16.1951 -7.6516 -1.8371 46 1 4.1736 -3.4828 -1.7037 47 1 5.6820 -3.6284 -0.7690 48 1 4.9890 -1.8149 0.7213 49 1 3.6775 -3.0210 0.6449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566636087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:48 Heat of formation + Delta-G solvation = 89.057606 kcal Electronic energy + Delta-G solvation = -27755.060884 eV Core-core repulsion = 23755.168912 eV Total energy + Delta-G solvation = -3999.891972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.52693 -40.23890 -38.59817 -36.24928 -35.32159 -34.61467 -32.27345 -31.69345 -31.39994 -30.72418 -30.30667 -27.31947 -25.69764 -24.14537 -23.52840 -22.47785 -22.34191 -21.96583 -21.47448 -20.53907 -19.45666 -18.23815 -17.14663 -16.88773 -16.62581 -16.44231 -16.02665 -15.53793 -15.38571 -15.27800 -14.66454 -14.58192 -14.44378 -14.23797 -14.01290 -13.94871 -13.77187 -13.33964 -13.15072 -12.64625 -12.56355 -12.39178 -12.29715 -11.88211 -11.76144 -11.69355 -11.64722 -11.12577 -10.89897 -10.60438 -10.54465 -10.43075 -10.34176 -10.27139 -10.16210 -10.09416 -9.82738 -9.51711 -9.48070 -8.67762 -8.06822 -6.98903 -5.96825 -3.32231 1.12888 1.72158 2.11539 2.49917 2.71993 3.30502 3.47706 3.51805 3.83783 3.86798 4.05146 4.07997 4.23911 4.48348 4.51609 4.58560 4.70200 4.71983 4.86071 4.93847 4.98113 5.04506 5.14223 5.29790 5.31843 5.41357 5.54249 5.63324 5.68839 5.73095 5.81743 5.90277 5.93484 5.93948 6.01102 6.02305 6.05796 6.19125 6.26443 6.35484 6.53792 6.61448 6.84156 6.98232 7.35949 7.40231 7.59037 7.69295 7.91916 8.30213 8.90786 9.69698 10.08899 11.19184 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.034239 B = 0.001474 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.592121 B =18993.108934 C =19173.963707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.608 5.608 10 C 0.130 3.870 11 C 0.044 3.956 12 N -0.535 5.535 13 C 0.058 3.942 14 C -0.128 4.128 15 C 0.119 3.881 16 N -0.725 5.725 17 C 0.519 3.481 18 O -0.543 6.543 19 C -0.154 4.154 20 C 0.146 3.854 21 N -0.381 5.381 22 C 0.257 3.743 23 N -0.549 5.549 24 C 0.199 3.801 25 N -0.320 5.320 26 C 0.039 3.961 27 C 0.152 3.848 28 H 0.263 0.737 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.220 0.780 45 H 0.217 0.783 46 H 0.032 0.968 47 H 0.067 0.933 48 H 0.029 0.971 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.753 -14.652 -7.835 31.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.086 4.086 12 N -0.260 5.260 13 C -0.071 4.071 14 C -0.166 4.166 15 C -0.004 4.004 16 N -0.376 5.376 17 C 0.304 3.696 18 O -0.420 6.420 19 C -0.194 4.194 20 C 0.024 3.976 21 N -0.172 5.172 22 C -0.040 4.040 23 N -0.276 5.276 24 C -0.104 4.104 25 N -0.148 5.148 26 C -0.090 4.090 27 C 0.025 3.975 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.238 0.762 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.236 0.764 45 H 0.234 0.766 46 H 0.051 0.949 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 26.918 -13.805 -8.117 31.322 hybrid contribution -0.310 0.466 -0.173 0.586 sum 26.608 -13.339 -8.290 30.898 Atomic orbital electron populations 1.69834 1.05731 1.26572 1.53097 1.25258 0.95238 0.97616 0.99546 0.86942 0.79983 0.84529 0.77072 1.21640 1.23153 1.19484 1.18929 0.84811 0.94822 1.40294 0.89711 1.44403 1.08493 1.32239 1.48116 1.21428 0.96518 0.91982 0.89693 1.22634 0.92785 0.95461 0.97676 1.61921 1.24543 1.18912 1.20597 1.21948 0.94004 0.97594 0.93538 1.21806 0.96958 1.00241 0.97627 1.21388 0.86642 0.96125 0.96279 1.46005 1.27018 1.53983 1.10639 1.20275 0.83263 0.78978 0.87103 1.90750 1.75434 1.61347 1.14486 1.21872 0.95974 1.01955 0.99639 1.21542 0.83501 0.98240 0.94351 1.50621 1.21888 1.09208 1.35438 1.26151 0.93886 0.86061 0.97908 1.70574 1.13532 1.29391 1.14077 1.26056 0.99515 0.85890 0.98948 1.78046 1.02380 1.23070 1.11290 1.22696 0.96715 0.93210 0.96387 1.21004 0.92049 0.91603 0.92804 0.92765 0.94966 0.90736 0.91617 0.94586 0.90883 0.94959 0.91018 0.90301 0.91162 0.91321 0.76179 0.87197 0.88110 0.87012 0.88214 0.76386 0.76633 0.94934 0.91473 0.95258 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.78 13.97 55.49 0.78 -27.00 16 2 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 3 Si 0.88 22.34 24.31 -169.99 -4.13 18.21 16 4 H -0.29 -6.99 6.58 56.52 0.37 -6.62 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.75 6.61 56.52 0.37 -6.38 16 7 C -0.26 -7.26 10.08 -15.06 -0.15 -7.41 16 8 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 9 N -0.61 -14.42 2.82 -172.01 -0.48 -14.91 16 10 C 0.13 2.83 4.35 -3.60 -0.02 2.81 16 11 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 12 N -0.53 -8.24 4.63 -234.32 -1.08 -9.33 16 13 C 0.06 0.67 4.96 -3.83 -0.02 0.65 16 14 C -0.13 -1.12 5.26 -26.73 -0.14 -1.26 16 15 C 0.12 0.97 5.68 -4.04 -0.02 0.95 16 16 N -0.73 -4.81 5.56 -60.29 -0.33 -5.15 16 17 C 0.52 3.89 7.83 -10.99 -0.09 3.81 16 18 O -0.54 -6.03 15.98 5.55 0.09 -5.95 16 19 C -0.15 -0.74 5.92 -27.89 -0.16 -0.91 16 20 C 0.15 0.73 5.84 -4.04 -0.02 0.70 16 21 N -0.38 -2.46 3.69 -62.63 -0.23 -2.69 16 22 C 0.26 1.48 12.63 -90.65 -1.14 0.33 16 23 N -0.55 -4.46 11.19 -15.83 -0.18 -4.64 16 24 C 0.20 1.48 13.03 -91.81 -1.20 0.28 16 25 N -0.32 -2.68 12.57 29.29 0.37 -2.31 16 26 C 0.04 0.62 5.46 -3.70 -0.02 0.60 16 27 C 0.15 2.93 6.69 -3.60 -0.02 2.91 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.03 0.71 6.94 -51.93 -0.36 0.35 16 30 H 0.07 1.77 4.61 -51.93 -0.24 1.53 16 31 H 0.07 1.01 7.99 -51.93 -0.41 0.59 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.80 7.97 -51.93 -0.41 0.38 16 34 H 0.03 0.38 8.13 -51.92 -0.42 -0.04 16 35 H 0.07 0.62 6.40 -51.93 -0.33 0.29 16 36 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.40 1.78 8.47 -40.82 -0.35 1.43 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 0.38 8.04 -51.92 -0.42 -0.04 16 43 H 0.10 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.22 0.31 8.06 -52.49 -0.42 -0.11 16 45 H 0.22 0.88 8.06 -52.49 -0.42 0.45 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.86 6.16 -51.93 -0.32 0.54 16 48 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 49 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -36.11 391.97 -10.37 -46.49 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.94 Total: -3.40 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.12 Total: 4.77 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -1.17 Total: -66.02 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: 0.09 Total: -5.95 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.13 Total: 18.21 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.11 -10.37 -46.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566636087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.543 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds