Wall clock time and date at job start Tue Mar 31 2020 19:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86796 * 120.00390 * 2 1 4 4 H 1.48501 * 109.47289 * 271.97610 * 3 2 1 5 5 H 1.48503 * 109.46836 * 31.97251 * 3 2 1 6 6 H 1.48503 * 109.47099 * 151.97467 * 3 2 1 7 7 C 1.38813 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 339.43940 * 7 2 1 9 9 N 1.36939 * 120.00164 * 159.44386 * 7 2 1 10 10 C 1.47077 * 120.88016 * 333.51092 * 9 7 2 11 11 C 1.53240 * 108.52155 * 231.16117 * 10 9 7 12 12 N 1.46901 * 109.33993 * 306.16962 * 11 10 9 13 13 C 1.46899 * 111.00000 * 187.25486 * 12 11 10 14 14 C 1.52991 * 109.47177 * 170.00288 * 13 12 11 15 15 C 1.53005 * 109.47127 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.46964 * 179.97438 * 15 14 13 17 17 C 1.34775 * 119.99799 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00047 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00030 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47510 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47673 * 180.02562 * 20 19 17 22 22 C 1.34426 * 126.82279 * 124.99581 * 21 20 19 23 23 N 1.30840 * 108.07327 * 179.97438 * 22 21 20 24 24 C 1.33237 * 109.82960 * 0.02562 * 23 22 21 25 25 N 1.30718 * 108.94646 * 359.75105 * 24 23 22 26 26 C 1.46899 * 111.26797 * 63.10526 * 12 11 10 27 27 C 1.47083 * 120.88272 * 153.48777 * 9 7 2 28 28 H 0.97003 * 120.00107 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.63033 * 111.44843 * 10 9 7 30 30 H 1.09005 * 109.78963 * 350.96745 * 10 9 7 31 31 H 1.08995 * 109.49145 * 186.20865 * 11 10 9 32 32 H 1.08999 * 109.49287 * 66.12962 * 11 10 9 33 33 H 1.09002 * 109.47263 * 49.99788 * 13 12 11 34 34 H 1.09009 * 109.46720 * 290.00033 * 13 12 11 35 35 H 1.09002 * 109.47432 * 59.99604 * 14 13 12 36 36 H 1.09009 * 109.47087 * 299.99520 * 14 13 12 37 37 H 1.08994 * 109.47121 * 59.99877 * 15 14 13 38 38 H 1.08995 * 109.47110 * 299.99258 * 15 14 13 39 39 H 0.97002 * 120.00145 * 0.27548 * 16 15 14 40 40 H 1.09000 * 109.47395 * 299.99866 * 19 17 16 41 41 H 1.09002 * 109.47194 * 59.99775 * 19 17 16 42 42 H 1.09009 * 109.46711 * 300.00151 * 20 19 17 43 43 H 1.09002 * 109.47007 * 59.99745 * 20 19 17 44 44 H 1.07995 * 125.96555 * 0.02562 * 22 21 20 45 45 H 1.07999 * 125.52969 * 179.97438 * 24 23 22 46 46 H 1.09004 * 109.49289 * 56.85359 * 26 12 11 47 47 H 1.08996 * 109.49291 * 176.93526 * 26 12 11 48 48 H 1.09007 * 109.62529 * 248.54820 * 27 9 7 49 49 H 1.08999 * 109.62754 * 9.12612 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4559 2.0705 -1.3992 5 1 1.4691 2.6402 0.7414 6 1 3.5680 1.4283 0.6579 7 6 2.0101 -1.2022 0.0005 8 1 1.5217 -2.1076 0.3294 9 7 3.3141 -1.2402 -0.4158 10 6 3.8307 -0.2486 -1.3713 11 6 4.5271 -0.9923 -2.5159 12 7 5.5362 -1.9042 -1.9608 13 6 6.3439 -2.5086 -3.0286 14 6 7.5324 -3.2490 -2.4122 15 6 8.3733 -3.8790 -3.5243 16 7 9.5117 -4.5875 -2.9340 17 6 10.3948 -5.2240 -3.7287 18 8 10.2467 -5.2108 -4.9324 19 6 11.5654 -5.9532 -3.1215 20 6 12.4057 -6.5843 -4.2335 21 7 13.5435 -7.2937 -3.6433 22 6 13.8747 -8.5829 -3.8316 23 7 14.9523 -8.8314 -3.1323 24 6 15.3363 -7.7307 -2.4871 25 7 14.5076 -6.7607 -2.7723 26 6 4.9159 -2.9375 -1.1208 27 6 4.2354 -2.2735 0.0810 28 1 -0.4850 0.8401 -0.0004 29 1 4.5453 0.4047 -0.8707 30 1 3.0073 0.3454 -1.7681 31 1 5.0112 -0.2725 -3.1759 32 1 3.7903 -1.5647 -3.0793 33 1 6.7087 -1.7269 -3.6950 34 1 5.7315 -3.2113 -3.5938 35 1 7.1676 -4.0306 -1.7458 36 1 8.1447 -2.5462 -1.8470 37 1 8.7380 -3.0977 -4.1910 38 1 7.7608 -4.5818 -4.0891 39 1 9.6274 -4.6021 -1.9711 40 1 12.1782 -5.2504 -2.5570 41 1 11.2006 -6.7344 -2.4545 42 1 11.7926 -7.2873 -4.7977 43 1 12.7705 -5.8034 -4.9009 44 1 13.3444 -9.2898 -4.4523 45 1 16.1951 -7.6516 -1.8371 46 1 4.1736 -3.4828 -1.7037 47 1 5.6820 -3.6284 -0.7690 48 1 4.9890 -1.8149 0.7213 49 1 3.6775 -3.0210 0.6449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566636087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:47 Heat of formation + Delta-G solvation = 63.131304 kcal Electronic energy + Delta-G solvation = -27756.185133 eV Core-core repulsion = 23755.168912 eV Total energy + Delta-G solvation = -4001.016221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.98643 -40.85576 -39.94733 -37.23655 -36.00647 -35.69706 -33.85545 -32.58834 -32.17418 -31.97057 -31.27629 -28.67590 -26.53477 -25.34674 -24.83624 -23.82456 -22.91349 -22.49594 -22.34711 -21.26343 -20.91240 -18.84046 -18.69628 -17.60631 -17.45430 -17.15370 -16.99815 -16.63760 -16.21971 -15.97284 -15.79113 -15.76213 -15.66449 -15.44470 -15.09613 -14.86491 -14.58806 -14.39766 -14.31322 -13.99250 -13.60370 -13.57896 -13.19322 -12.98141 -12.95334 -12.67004 -12.51666 -12.28673 -12.25874 -12.18748 -11.89806 -11.62429 -11.59384 -11.38817 -11.16664 -10.96598 -10.79259 -10.72663 -10.63974 -10.12885 -9.37078 -8.90236 -8.18051 -5.49405 0.68567 1.29149 1.30952 1.41339 1.50941 1.54715 2.01942 2.17715 2.40660 2.89986 3.06890 3.36223 3.46994 3.55126 3.63459 3.84224 3.93731 4.02200 4.12967 4.15855 4.20636 4.22416 4.26860 4.36451 4.40685 4.50190 4.56123 4.60563 4.63791 4.67622 4.74851 4.78066 4.80548 4.83285 4.98551 5.01794 5.17746 5.24099 5.28656 5.30737 5.41690 5.47704 5.81645 5.88530 6.07523 6.10417 6.22667 6.47616 6.88934 7.12748 7.16380 7.60200 8.02654 9.01827 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.034239 B = 0.001474 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.592121 B =18993.108934 C =19173.963707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.035 4.035 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.311 1.311 6 H -0.264 1.264 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.624 5.624 10 C 0.124 3.876 11 C 0.053 3.947 12 N -0.538 5.538 13 C 0.058 3.942 14 C -0.114 4.114 15 C 0.126 3.874 16 N -0.717 5.717 17 C 0.520 3.480 18 O -0.581 6.581 19 C -0.140 4.140 20 C 0.146 3.854 21 N -0.383 5.383 22 C 0.261 3.739 23 N -0.581 5.581 24 C 0.193 3.807 25 N -0.351 5.351 26 C 0.050 3.950 27 C 0.144 3.856 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.417 0.583 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.257 0.743 45 H 0.238 0.762 46 H 0.018 0.982 47 H 0.106 0.894 48 H 0.038 0.962 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.456 -15.242 -8.341 34.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.240 1.240 6 H -0.188 1.188 7 C -0.380 4.380 8 H 0.070 0.930 9 N -0.349 5.349 10 C -0.001 4.001 11 C -0.077 4.077 12 N -0.262 5.262 13 C -0.071 4.071 14 C -0.152 4.152 15 C 0.002 3.998 16 N -0.369 5.369 17 C 0.307 3.693 18 O -0.461 6.461 19 C -0.181 4.181 20 C 0.024 3.976 21 N -0.174 5.174 22 C -0.035 4.035 23 N -0.308 5.308 24 C -0.110 4.110 25 N -0.179 5.179 26 C -0.079 4.079 27 C 0.020 3.980 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.273 0.727 45 H 0.254 0.746 46 H 0.036 0.964 47 H 0.124 0.876 48 H 0.056 0.944 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 29.675 -14.407 -8.614 34.094 hybrid contribution -1.131 0.535 -0.026 1.252 sum 28.544 -13.873 -8.640 32.891 Atomic orbital electron populations 1.69964 1.07406 1.27237 1.55771 1.25884 0.95838 1.00976 1.00322 0.85885 0.78485 0.80087 0.77716 1.19901 1.23958 1.18827 1.18889 0.86694 0.93629 1.38803 0.93015 1.44556 1.07735 1.33620 1.49023 1.21452 0.96020 0.92022 0.90618 1.22431 0.93129 0.96112 0.96011 1.61903 1.23573 1.18938 1.21826 1.22039 0.94208 0.98073 0.92737 1.21645 0.95839 1.00128 0.97552 1.21200 0.86868 0.95811 0.95919 1.45924 1.26339 1.53305 1.11361 1.20651 0.83589 0.78534 0.86574 1.90738 1.76409 1.62798 1.16198 1.21763 0.94734 1.02050 0.99516 1.21612 0.83257 0.98471 0.94268 1.50672 1.21870 1.09543 1.35273 1.26914 0.93197 0.86227 0.97120 1.70591 1.14876 1.30089 1.15292 1.26557 0.99931 0.85595 0.98916 1.77984 1.03323 1.24044 1.12515 1.22551 0.97255 0.93266 0.94804 1.21214 0.91561 0.90647 0.94626 0.92947 0.94667 0.93023 0.88848 0.95980 0.89870 0.95015 0.90342 0.89808 0.91885 0.92093 0.74644 0.87146 0.86441 0.85177 0.89372 0.72695 0.74594 0.96386 0.87641 0.94408 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.34 13.97 21.65 0.30 -60.04 16 2 C -0.04 -2.08 5.24 84.86 0.44 -1.64 16 3 Si 0.95 46.71 24.31 68.60 1.67 48.38 16 4 H -0.27 -12.55 6.58 99.48 0.65 -11.90 16 5 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 6 H -0.26 -12.54 6.61 99.48 0.66 -11.88 16 7 C -0.25 -14.29 10.08 84.03 0.85 -13.44 16 8 H 0.05 3.21 8.05 -2.91 -0.02 3.19 16 9 N -0.62 -29.36 2.82 -698.11 -1.97 -31.33 16 10 C 0.12 5.23 4.35 86.35 0.38 5.61 16 11 C 0.05 1.74 5.62 86.38 0.49 2.22 16 12 N -0.54 -14.92 4.63 -895.27 -4.14 -19.06 16 13 C 0.06 1.14 4.96 86.30 0.43 1.57 16 14 C -0.11 -1.57 5.26 30.59 0.16 -1.41 16 15 C 0.13 1.72 5.68 86.38 0.49 2.21 16 16 N -0.72 -7.54 5.56 -463.06 -2.57 -10.11 16 17 C 0.52 6.72 7.83 87.65 0.69 7.40 16 18 O -0.58 -12.10 15.98 -3.04 -0.05 -12.15 16 19 C -0.14 -1.04 5.92 29.85 0.18 -0.86 16 20 C 0.15 1.19 5.84 86.38 0.50 1.70 16 21 N -0.38 -4.31 3.69 -352.05 -1.30 -5.61 16 22 C 0.26 2.49 12.63 180.36 2.28 4.77 16 23 N -0.58 -8.69 11.19 -204.00 -2.28 -10.97 16 24 C 0.19 2.67 13.03 180.76 2.36 5.03 16 25 N -0.35 -5.48 12.57 -61.25 -0.77 -6.25 16 26 C 0.05 1.46 5.46 86.38 0.47 1.93 16 27 C 0.14 5.39 6.69 86.35 0.58 5.97 16 28 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.04 1.47 6.94 -2.39 -0.02 1.46 16 30 H 0.05 2.40 4.61 -2.38 -0.01 2.39 16 31 H 0.09 2.57 7.99 -2.39 -0.02 2.55 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.52 7.97 -2.39 -0.02 1.50 16 34 H 0.03 0.66 8.13 -2.38 -0.02 0.64 16 35 H 0.08 1.01 6.40 -2.39 -0.02 1.00 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.42 2.27 8.47 -92.71 -0.79 1.48 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.12 0.51 8.14 -2.39 -0.02 0.50 16 42 H 0.13 0.57 8.04 -2.38 -0.02 0.55 16 43 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 44 H 0.26 -0.03 8.06 -2.91 -0.02 -0.06 16 45 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.11 2.27 6.16 -2.39 -0.01 2.26 16 48 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.06 2.24 7.95 -2.39 -0.02 2.23 16 Total: -1.00 -80.20 391.97 -0.77 -80.97 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.06 Total: 5.12 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 10.28 Total: 21.05 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -12.73 Total: -143.38 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.05 Total: -12.15 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.67 Total: 48.38 kcal Total: -80.20 -0.77 -80.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566636087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.103 kcal (2) G-P(sol) polarization free energy of solvation -80.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds