Wall clock time and date at job start Tue Mar 31 2020 19:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47368 * 2 1 4 4 C 1.50702 * 109.47331 * 120.00015 * 2 1 3 5 5 N 1.31071 * 126.65716 * 306.69560 * 4 2 1 6 6 N 1.28840 * 107.98830 * 180.23935 * 5 4 2 7 7 N 1.28736 * 109.39997 * 359.75126 * 6 5 4 8 8 N 1.29019 * 108.80695 * 0.02562 * 7 6 5 9 9 C 1.46500 * 126.43870 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47080 * 85.18858 * 9 8 7 11 11 O 1.21276 * 120.00373 * 0.26615 * 10 9 8 12 12 N 1.34782 * 120.00063 * 180.26893 * 10 9 8 13 13 C 1.46928 * 120.62877 * 6.00759 * 12 10 9 14 14 C 1.53188 * 108.77545 * 126.37089 * 13 12 10 15 15 C 1.53050 * 109.31138 * 54.63655 * 14 13 12 16 16 C 1.53038 * 109.53464 * 298.63538 * 15 14 13 17 17 C 1.46923 * 120.63227 * 185.99354 * 12 10 9 18 18 H 1.08993 * 109.59182 * 113.69910 * 17 12 10 19 19 C 1.52998 * 109.58564 * 353.40878 * 17 12 10 20 20 N 1.46502 * 109.46997 * 69.52277 * 19 17 12 21 21 C 1.36928 * 120.00030 * 180.78958 * 20 19 17 22 22 H 1.08000 * 120.00493 * 6.99782 * 21 20 19 23 23 C 1.38816 * 120.00017 * 187.00036 * 21 20 19 24 24 N 1.31618 * 119.99910 * 187.05642 * 23 21 20 25 25 Si 1.86800 * 119.99809 * 7.05234 * 23 21 20 26 26 H 1.48500 * 109.47169 * 89.24630 * 25 23 21 27 27 H 1.48506 * 109.46808 * 209.24305 * 25 23 21 28 28 H 1.48497 * 109.47268 * 329.23994 * 25 23 21 29 29 H 1.09001 * 109.46725 * 305.24824 * 1 2 3 30 30 H 1.08998 * 109.46888 * 65.25233 * 1 2 3 31 31 H 1.08997 * 109.47271 * 185.24859 * 1 2 3 32 32 H 1.09001 * 109.47274 * 239.99492 * 2 1 3 33 33 H 1.08999 * 109.46879 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46692 * 299.99681 * 3 2 1 35 35 H 1.09001 * 109.46950 * 59.99907 * 3 2 1 36 36 H 1.09005 * 109.47012 * 325.18944 * 9 8 7 37 37 H 1.08995 * 109.47127 * 205.18758 * 9 8 7 38 38 H 1.09000 * 109.59059 * 246.15915 * 13 12 10 39 39 H 1.08998 * 109.58814 * 6.58646 * 13 12 10 40 40 H 1.08997 * 109.50060 * 174.58662 * 14 13 12 41 41 H 1.09001 * 109.50036 * 294.65458 * 14 13 12 42 42 H 1.08997 * 109.45730 * 58.65502 * 15 14 13 43 43 H 1.09001 * 109.45966 * 178.62895 * 15 14 13 44 44 H 1.09001 * 109.50137 * 301.40944 * 16 15 14 45 45 H 1.09009 * 109.49293 * 181.31671 * 16 15 14 46 46 H 1.09000 * 109.47364 * 309.51865 * 19 17 12 47 47 H 1.09003 * 109.47234 * 189.51976 * 19 17 12 48 48 H 0.97003 * 119.99551 * 1.06851 * 20 19 17 49 49 H 0.97004 * 120.00089 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7009 -0.4539 2.4723 6 7 2.3440 -1.2712 3.2328 7 7 3.0732 -2.0459 2.5079 8 7 2.9064 -1.7333 1.2674 9 6 3.5515 -2.3686 0.1156 10 6 2.7615 -3.5843 -0.2952 11 8 1.7557 -3.8872 0.3110 12 7 3.1726 -4.3350 -1.3364 13 6 4.4556 -4.0596 -1.9974 14 6 5.2829 -5.3485 -2.0245 15 6 4.4637 -6.4621 -2.6813 16 6 3.1975 -6.7180 -1.8607 17 6 2.3465 -5.4445 -1.8317 18 1 1.9926 -5.2161 -2.8369 19 6 1.1499 -5.6484 -0.9004 20 7 0.2288 -4.5170 -1.0339 21 6 -0.9138 -4.4717 -0.2807 22 1 -1.0815 -5.2085 0.4909 23 6 -1.8567 -3.4788 -0.5089 24 7 -2.8855 -3.3495 0.3017 25 14 -1.6652 -2.3262 -1.9663 26 1 -2.3370 -2.9133 -3.1534 27 1 -2.2843 -1.0151 -1.6452 28 1 -0.2221 -2.1337 -2.2590 29 1 -0.3633 0.5931 0.8393 30 1 -0.3633 0.4302 -0.9333 31 1 -0.3634 -1.0233 0.0940 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.5643 -2.6676 0.3857 37 1 3.5901 -1.6629 -0.7142 38 1 4.2757 -3.7193 -3.0171 39 1 4.9945 -3.2911 -1.4433 40 1 6.1959 -5.1829 -2.5964 41 1 5.5394 -5.6378 -1.0054 42 1 4.1870 -6.1615 -3.6918 43 1 5.0591 -7.3741 -2.7239 44 1 3.4732 -6.9946 -0.8430 45 1 2.6263 -7.5270 -2.3160 46 1 1.4985 -5.7136 0.1303 47 1 0.6339 -6.5704 -1.1684 48 1 0.4265 -3.8019 -1.6588 49 1 -3.5442 -2.6554 0.1425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566949517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:50 Heat of formation + Delta-G solvation = 136.790561 kcal Electronic energy + Delta-G solvation = -32261.172869 eV Core-core repulsion = 28263.350753 eV Total energy + Delta-G solvation = -3997.822116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.87246 -40.52561 -37.46107 -36.04542 -35.46143 -34.45139 -33.02166 -32.15236 -31.15969 -30.37157 -28.90752 -27.14051 -26.45388 -24.65042 -24.18083 -23.41046 -22.52509 -21.60032 -20.80594 -20.46038 -19.33928 -17.85239 -17.43885 -17.03145 -16.12259 -15.78306 -15.72601 -15.15092 -14.84673 -14.56679 -14.48336 -14.17365 -13.98324 -13.67632 -13.51854 -13.17429 -13.07590 -12.75069 -12.65854 -12.53186 -12.46582 -12.15414 -12.00902 -11.87940 -11.56636 -11.40485 -11.37393 -11.24592 -11.11043 -11.02545 -10.94996 -10.78169 -10.68799 -10.50802 -10.39352 -10.11036 -9.68444 -9.48369 -8.90111 -8.72122 -8.41380 -6.93598 -5.63052 -2.92126 1.46403 2.05711 2.61692 2.73206 2.98598 3.28259 3.39430 3.43963 4.05114 4.20167 4.27887 4.47081 4.52338 4.62756 4.64781 4.69486 4.71546 4.87633 5.00333 5.11117 5.14466 5.15927 5.29340 5.34875 5.48803 5.56862 5.62358 5.64709 5.69087 5.70142 5.73830 5.74504 5.86849 5.88435 5.97685 5.98022 5.99974 6.02540 6.21218 6.25059 6.33315 6.38582 6.65398 6.67820 7.00238 7.44324 8.13665 8.37341 8.54926 8.94788 9.33678 10.05343 10.26279 11.56408 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.006584 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.014912 B = 4251.515199 C = 5960.221203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.209 3.791 5 N -0.297 5.297 6 N -0.075 5.075 7 N -0.089 5.089 8 N -0.292 5.292 9 C 0.095 3.905 10 C 0.456 3.544 11 O -0.415 6.415 12 N -0.612 5.612 13 C 0.107 3.893 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.128 4.128 17 C 0.142 3.858 18 H 0.071 0.929 19 C 0.161 3.839 20 N -0.725 5.725 21 C -0.211 4.211 22 H 0.084 0.916 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.879 3.121 26 H -0.294 1.294 27 H -0.289 1.289 28 H -0.286 1.286 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.023 0.977 48 H 0.354 0.646 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.745 2.433 -9.986 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 C -0.200 4.200 4 C -0.069 4.069 5 N -0.146 5.146 6 N -0.069 5.069 7 N -0.074 5.074 8 N -0.093 5.093 9 C -0.032 4.032 10 C 0.237 3.763 11 O -0.281 6.281 12 N -0.352 5.352 13 C -0.017 4.017 14 C -0.173 4.173 15 C -0.156 4.156 16 C -0.167 4.167 17 C 0.039 3.961 18 H 0.089 0.911 19 C 0.034 3.966 20 N -0.369 5.369 21 C -0.341 4.341 22 H 0.102 0.898 23 C -0.195 4.195 24 N -0.584 5.584 25 Si 0.712 3.288 26 H -0.222 1.222 27 H -0.215 1.215 28 H -0.214 1.214 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.187 0.813 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.013 1.989 -7.982 21.637 hybrid contribution 0.256 0.802 -2.156 2.315 sum 20.269 2.791 -10.138 22.834 Atomic orbital electron populations 1.21961 0.91264 1.04892 1.02702 1.19756 0.98339 0.95403 0.89593 1.21857 1.00636 0.93870 1.03625 1.25946 0.92313 0.90729 0.97887 1.74923 1.19911 1.21260 0.98481 1.78537 1.04582 1.01229 1.22543 1.78780 1.20916 1.20266 0.87432 1.47790 1.31168 1.23434 1.06863 1.22025 0.98185 0.96753 0.86219 1.20198 0.86957 0.85369 0.83772 1.91276 1.20561 1.67265 1.48979 1.47817 1.20911 1.33275 1.33169 1.21709 0.84195 0.97554 0.98198 1.21914 0.98161 0.95336 1.01882 1.21499 0.96461 0.98431 0.99165 1.21909 0.96240 0.97325 1.01180 1.21596 0.91091 0.84965 0.98467 0.91133 1.20928 0.87654 0.90696 0.97295 1.42598 1.23534 1.22222 1.48576 1.18945 0.92904 1.11355 1.10926 0.89826 1.24618 0.97334 0.98786 0.98778 1.69709 1.14564 1.35863 1.38249 0.86759 0.76378 0.81372 0.84312 1.22164 1.21541 1.21355 0.90910 0.91662 0.90313 0.89569 0.92702 0.90957 0.90981 0.85231 0.85593 0.91250 0.90491 0.90864 0.91334 0.91794 0.91710 0.91242 0.90532 0.92976 0.95917 0.81337 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.23 37.16 0.31 -2.38 16 2 C -0.01 -0.13 3.22 -91.77 -0.30 -0.43 16 3 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 4 C 0.21 3.67 6.66 -155.43 -1.04 2.64 16 5 N -0.30 -6.03 12.33 32.70 0.40 -5.63 16 6 N -0.08 -1.58 13.43 60.35 0.81 -0.77 16 7 N -0.09 -1.70 13.29 60.35 0.80 -0.90 16 8 N -0.29 -4.84 2.83 -59.45 -0.17 -5.00 16 9 C 0.09 1.12 5.06 -5.20 -0.03 1.09 16 10 C 0.46 7.07 7.26 -10.99 -0.08 6.99 16 11 O -0.42 -8.98 10.06 5.56 0.06 -8.93 16 12 N -0.61 -7.57 2.97 -165.23 -0.49 -8.06 16 13 C 0.11 0.80 6.32 -3.71 -0.02 0.78 16 14 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16 15 C -0.12 -0.91 5.88 -26.69 -0.16 -1.06 16 16 C -0.13 -1.35 5.36 -26.61 -0.14 -1.49 16 17 C 0.14 1.97 2.92 -67.60 -0.20 1.77 16 18 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 19 C 0.16 3.15 4.87 -4.04 -0.02 3.13 16 20 N -0.72 -17.33 3.02 -59.91 -0.18 -17.51 16 21 C -0.21 -6.18 9.89 -15.06 -0.15 -6.33 16 22 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 23 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 24 N -0.93 -30.38 13.97 55.49 0.78 -29.61 16 25 Si 0.88 22.23 24.75 -169.99 -4.21 18.02 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 28 H -0.29 -6.55 6.28 56.52 0.35 -6.20 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.04 7.97 -51.93 -0.41 0.63 16 31 H 0.08 1.80 5.90 -51.93 -0.31 1.49 16 32 H 0.09 1.11 6.84 -51.93 -0.36 0.75 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.13 1.08 7.43 -51.93 -0.39 0.70 16 37 H 0.13 1.03 7.00 -51.93 -0.36 0.66 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.39 5.96 -51.93 -0.31 0.08 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.05 1.15 6.29 -51.93 -0.33 0.82 16 47 H 0.02 0.46 8.13 -51.93 -0.42 0.03 16 48 H 0.35 8.28 5.21 -40.82 -0.21 8.07 16 49 H 0.26 7.95 8.31 -40.82 -0.34 7.62 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -38.41 378.39 -6.01 -44.42 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.77 Total: 5.93 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.74 Total: 2.33 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: 1.95 Total: -67.47 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.06 Total: -8.93 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.21 Total: 18.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.41 -6.01 -44.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566949517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.209 kcal (2) G-P(sol) polarization free energy of solvation -38.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds