Wall clock time and date at job start Tue Mar 31 2020 19:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47368 * 2 1 4 4 C 1.50702 * 109.47331 * 120.00015 * 2 1 3 5 5 N 1.31071 * 126.65716 * 306.69560 * 4 2 1 6 6 N 1.28840 * 107.98830 * 180.23935 * 5 4 2 7 7 N 1.28736 * 109.39997 * 359.75126 * 6 5 4 8 8 N 1.29019 * 108.80695 * 0.02562 * 7 6 5 9 9 C 1.46500 * 126.43870 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47080 * 85.18858 * 9 8 7 11 11 O 1.21276 * 120.00373 * 0.26615 * 10 9 8 12 12 N 1.34782 * 120.00063 * 180.26893 * 10 9 8 13 13 C 1.46928 * 120.62877 * 6.00759 * 12 10 9 14 14 C 1.53188 * 108.77545 * 126.37089 * 13 12 10 15 15 C 1.53050 * 109.31138 * 54.63655 * 14 13 12 16 16 C 1.53038 * 109.53464 * 298.63538 * 15 14 13 17 17 C 1.46923 * 120.63227 * 185.99354 * 12 10 9 18 18 H 1.08993 * 109.59182 * 113.69910 * 17 12 10 19 19 C 1.52998 * 109.58564 * 353.40878 * 17 12 10 20 20 N 1.46502 * 109.46997 * 69.52277 * 19 17 12 21 21 C 1.36928 * 120.00030 * 180.78958 * 20 19 17 22 22 H 1.08000 * 120.00493 * 6.99782 * 21 20 19 23 23 C 1.38816 * 120.00017 * 187.00036 * 21 20 19 24 24 N 1.31618 * 119.99910 * 187.05642 * 23 21 20 25 25 Si 1.86800 * 119.99809 * 7.05234 * 23 21 20 26 26 H 1.48500 * 109.47169 * 89.24630 * 25 23 21 27 27 H 1.48506 * 109.46808 * 209.24305 * 25 23 21 28 28 H 1.48497 * 109.47268 * 329.23994 * 25 23 21 29 29 H 1.09001 * 109.46725 * 305.24824 * 1 2 3 30 30 H 1.08998 * 109.46888 * 65.25233 * 1 2 3 31 31 H 1.08997 * 109.47271 * 185.24859 * 1 2 3 32 32 H 1.09001 * 109.47274 * 239.99492 * 2 1 3 33 33 H 1.08999 * 109.46879 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46692 * 299.99681 * 3 2 1 35 35 H 1.09001 * 109.46950 * 59.99907 * 3 2 1 36 36 H 1.09005 * 109.47012 * 325.18944 * 9 8 7 37 37 H 1.08995 * 109.47127 * 205.18758 * 9 8 7 38 38 H 1.09000 * 109.59059 * 246.15915 * 13 12 10 39 39 H 1.08998 * 109.58814 * 6.58646 * 13 12 10 40 40 H 1.08997 * 109.50060 * 174.58662 * 14 13 12 41 41 H 1.09001 * 109.50036 * 294.65458 * 14 13 12 42 42 H 1.08997 * 109.45730 * 58.65502 * 15 14 13 43 43 H 1.09001 * 109.45966 * 178.62895 * 15 14 13 44 44 H 1.09001 * 109.50137 * 301.40944 * 16 15 14 45 45 H 1.09009 * 109.49293 * 181.31671 * 16 15 14 46 46 H 1.09000 * 109.47364 * 309.51865 * 19 17 12 47 47 H 1.09003 * 109.47234 * 189.51976 * 19 17 12 48 48 H 0.97003 * 119.99551 * 1.06851 * 20 19 17 49 49 H 0.97004 * 120.00089 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7009 -0.4539 2.4723 6 7 2.3440 -1.2712 3.2328 7 7 3.0732 -2.0459 2.5079 8 7 2.9064 -1.7333 1.2674 9 6 3.5515 -2.3686 0.1156 10 6 2.7615 -3.5843 -0.2952 11 8 1.7557 -3.8872 0.3110 12 7 3.1726 -4.3350 -1.3364 13 6 4.4556 -4.0596 -1.9974 14 6 5.2829 -5.3485 -2.0245 15 6 4.4637 -6.4621 -2.6813 16 6 3.1975 -6.7180 -1.8607 17 6 2.3465 -5.4445 -1.8317 18 1 1.9926 -5.2161 -2.8369 19 6 1.1499 -5.6484 -0.9004 20 7 0.2288 -4.5170 -1.0339 21 6 -0.9138 -4.4717 -0.2807 22 1 -1.0815 -5.2085 0.4909 23 6 -1.8567 -3.4788 -0.5089 24 7 -2.8855 -3.3495 0.3017 25 14 -1.6652 -2.3262 -1.9663 26 1 -2.3370 -2.9133 -3.1534 27 1 -2.2843 -1.0151 -1.6452 28 1 -0.2221 -2.1337 -2.2590 29 1 -0.3633 0.5931 0.8393 30 1 -0.3633 0.4302 -0.9333 31 1 -0.3634 -1.0233 0.0940 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.5643 -2.6676 0.3857 37 1 3.5901 -1.6629 -0.7142 38 1 4.2757 -3.7193 -3.0171 39 1 4.9945 -3.2911 -1.4433 40 1 6.1959 -5.1829 -2.5964 41 1 5.5394 -5.6378 -1.0054 42 1 4.1870 -6.1615 -3.6918 43 1 5.0591 -7.3741 -2.7239 44 1 3.4732 -6.9946 -0.8430 45 1 2.6263 -7.5270 -2.3160 46 1 1.4985 -5.7136 0.1303 47 1 0.6339 -6.5704 -1.1684 48 1 0.4265 -3.8019 -1.6588 49 1 -3.5442 -2.6554 0.1425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566949517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:48 Heat of formation + Delta-G solvation = 106.978936 kcal Electronic energy + Delta-G solvation = -32262.465598 eV Core-core repulsion = 28263.350753 eV Total energy + Delta-G solvation = -3999.114845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -45.24505 -41.65167 -38.48986 -37.24980 -36.88109 -36.07034 -34.06895 -33.76840 -32.50758 -31.97534 -30.00684 -28.24133 -27.83474 -25.83011 -25.48674 -24.62726 -24.07097 -22.98124 -21.92375 -21.53817 -20.48511 -19.61638 -18.74282 -18.30407 -17.36939 -16.90418 -16.85396 -16.59778 -16.28211 -15.81062 -15.61587 -15.40839 -15.03517 -14.93868 -14.71206 -14.46781 -14.23625 -14.17426 -13.91969 -13.84217 -13.67397 -13.43555 -13.27144 -13.15111 -12.89859 -12.77999 -12.66668 -12.31665 -12.28813 -12.18537 -12.16350 -11.99232 -11.95930 -11.85382 -11.74780 -11.50077 -11.38908 -11.07415 -10.92268 -10.05940 -9.62658 -8.95303 -7.95837 -5.21928 0.12872 0.92068 1.18070 1.22416 1.37361 1.43147 1.62835 1.96427 2.49799 2.86839 3.13677 3.29293 3.33886 3.55871 3.62535 3.78284 3.86247 3.94053 3.97810 4.01857 4.12053 4.17540 4.28449 4.31478 4.34732 4.37637 4.61217 4.62147 4.67992 4.73238 4.74952 4.83313 4.85639 4.90969 4.94767 5.02180 5.10085 5.15553 5.18368 5.21248 5.26803 5.30290 5.31768 5.53724 5.70799 5.78658 6.24997 6.42518 7.14431 7.27617 7.52162 7.90203 8.12995 9.28025 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.006584 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.014912 B = 4251.515199 C = 5960.221203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.006 4.006 3 C -0.134 4.134 4 C 0.208 3.792 5 N -0.332 5.332 6 N -0.112 5.112 7 N -0.099 5.099 8 N -0.285 5.285 9 C 0.086 3.914 10 C 0.455 3.545 11 O -0.497 6.497 12 N -0.604 5.604 13 C 0.096 3.904 14 C -0.132 4.132 15 C -0.113 4.113 16 C -0.122 4.122 17 C 0.150 3.850 18 H 0.083 0.917 19 C 0.163 3.837 20 N -0.717 5.717 21 C -0.200 4.200 22 H 0.025 0.975 23 C -0.074 4.074 24 N -0.994 5.994 25 Si 0.959 3.041 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.244 1.244 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.024 0.976 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.020 0.980 47 H 0.010 0.990 48 H 0.360 0.640 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.448 4.370 -14.727 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 C -0.192 4.192 4 C -0.070 4.070 5 N -0.180 5.180 6 N -0.105 5.105 7 N -0.085 5.085 8 N -0.086 5.086 9 C -0.037 4.037 10 C 0.239 3.761 11 O -0.368 6.368 12 N -0.341 5.341 13 C -0.025 4.025 14 C -0.170 4.170 15 C -0.151 4.151 16 C -0.161 4.161 17 C 0.046 3.954 18 H 0.101 0.899 19 C 0.037 3.963 20 N -0.362 5.362 21 C -0.332 4.332 22 H 0.043 0.957 23 C -0.264 4.264 24 N -0.646 5.646 25 Si 0.787 3.213 26 H -0.221 1.221 27 H -0.213 1.213 28 H -0.169 1.169 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.190 0.810 37 H 0.196 0.804 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.038 0.962 47 H 0.028 0.972 48 H 0.194 0.806 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 24.843 3.891 -12.787 28.210 hybrid contribution -1.131 0.018 -0.619 1.289 sum 23.713 3.909 -13.405 27.519 Atomic orbital electron populations 1.21924 0.94103 1.01246 1.03595 1.20014 0.95797 0.97966 0.89027 1.21853 1.02182 0.90890 1.04258 1.26538 0.91739 0.90708 0.98008 1.74811 1.20860 1.22254 1.00115 1.78485 1.05887 1.02345 1.23811 1.78644 1.20974 1.20019 0.88841 1.48075 1.30727 1.22838 1.06976 1.22630 0.98712 0.96133 0.86243 1.20914 0.86155 0.86035 0.83001 1.91291 1.24336 1.69283 1.51918 1.47980 1.22255 1.31690 1.32188 1.22218 0.81685 0.99036 0.99535 1.21929 0.98977 0.94294 1.01779 1.21501 0.94756 0.99761 0.99055 1.21873 0.97525 0.95554 1.01178 1.21406 0.89668 0.87440 0.96838 0.89943 1.20902 0.89278 0.88830 0.97275 1.42328 1.22454 1.23620 1.47762 1.18753 0.94984 1.09727 1.09707 0.95720 1.25509 0.96953 1.01336 1.02568 1.69959 1.16208 1.37305 1.41140 0.85466 0.78698 0.78250 0.78860 1.22139 1.21273 1.16850 0.91871 0.89302 0.95728 0.86648 0.90165 0.88165 0.92554 0.81032 0.80412 0.88750 0.87188 0.87617 0.92369 0.90495 0.90457 0.92843 0.90372 0.96219 0.97178 0.80634 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 8.23 71.98 0.59 -4.60 16 2 C -0.01 -0.17 3.22 -11.54 -0.04 -0.20 16 3 C -0.13 -2.32 9.18 71.98 0.66 -1.66 16 4 C 0.21 7.06 6.66 138.14 0.92 7.98 16 5 N -0.33 -13.78 12.33 -50.45 -0.62 -14.40 16 6 N -0.11 -4.86 13.43 37.01 0.50 -4.37 16 7 N -0.10 -3.81 13.29 37.02 0.49 -3.32 16 8 N -0.29 -8.94 2.83 -341.99 -0.97 -9.91 16 9 C 0.09 1.66 5.06 85.63 0.43 2.09 16 10 C 0.46 13.05 7.26 87.65 0.64 13.68 16 11 O -0.50 -21.95 10.06 -3.02 -0.03 -21.98 16 12 N -0.60 -12.69 2.97 -795.06 -2.36 -15.05 16 13 C 0.10 0.81 6.32 86.36 0.55 1.36 16 14 C -0.13 -1.01 6.08 30.67 0.19 -0.82 16 15 C -0.11 -1.22 5.88 30.62 0.18 -1.04 16 16 C -0.12 -2.34 5.36 30.67 0.16 -2.18 16 17 C 0.15 3.87 2.92 44.98 0.13 4.00 16 18 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 19 C 0.16 6.64 4.87 86.38 0.42 7.07 16 20 N -0.72 -35.17 3.02 -343.45 -1.04 -36.21 16 21 C -0.20 -12.51 9.89 84.04 0.83 -11.67 16 22 H 0.02 1.78 8.06 -2.91 -0.02 1.76 16 23 C -0.07 -4.67 5.50 84.86 0.47 -4.20 16 24 N -0.99 -68.85 13.97 21.65 0.30 -68.55 16 25 Si 0.96 46.78 24.75 68.60 1.70 48.47 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.24 -9.96 6.28 99.48 0.62 -9.34 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.58 7.97 -2.39 -0.02 2.56 16 31 H 0.02 1.10 5.90 -2.39 -0.01 1.09 16 32 H 0.12 2.29 6.84 -2.39 -0.02 2.27 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.17 1.86 7.43 -2.38 -0.02 1.84 16 37 H 0.18 1.58 7.00 -2.39 -0.02 1.56 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.11 0.25 5.96 -2.39 -0.01 0.24 16 40 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.02 0.95 6.29 -2.39 -0.02 0.93 16 47 H 0.01 0.44 8.13 -2.39 -0.02 0.42 16 48 H 0.36 16.42 5.21 -92.71 -0.48 15.93 16 49 H 0.25 16.63 8.31 -92.71 -0.77 15.85 16 Total: -1.00 -98.63 378.39 4.50 -94.14 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.40 Total: 21.37 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 6.13 Total: 9.79 kcal Atomic # 7 Polarization: -148.09 SS G_CDS: -3.70 Total: -151.79 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.03 Total: -21.98 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.70 Total: 48.47 kcal Total: -98.63 4.50 -94.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566949517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.114 kcal (2) G-P(sol) polarization free energy of solvation -98.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds