Wall clock time and date at job start Tue Mar 31 2020 19:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47134 * 2 1 4 4 C 1.52998 * 109.47140 * 119.99965 * 2 1 3 5 5 N 1.46497 * 109.47501 * 240.00011 * 2 1 3 6 6 N 1.28788 * 125.44513 * 0.02562 * 5 2 1 7 7 N 1.28995 * 108.72362 * 179.97438 * 6 5 2 8 8 C 1.33323 * 107.35558 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.54529 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47263 * 90.02855 * 9 8 7 11 11 O 1.21284 * 119.99997 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99961 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00060 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47033 * 184.61980 * 13 12 10 15 15 H 1.08994 * 109.87939 * 300.84613 * 14 13 12 16 16 C 1.54319 * 109.88314 * 179.82747 * 14 13 12 17 17 C 1.55406 * 102.83285 * 218.48093 * 16 14 13 18 18 C 1.54914 * 101.66031 * 35.34038 * 17 16 14 19 19 N 1.47030 * 109.88477 * 61.86372 * 14 13 12 20 20 C 1.36940 * 125.64654 * 298.32073 * 19 14 13 21 21 H 1.08001 * 119.99775 * 336.74923 * 20 19 14 22 22 C 1.38810 * 120.00331 * 156.74440 * 20 19 14 23 23 N 1.31612 * 120.00211 * 159.22047 * 22 20 19 24 24 Si 1.86800 * 119.99752 * 339.22478 * 22 20 19 25 25 H 1.48501 * 109.47112 * 85.38722 * 24 22 20 26 26 H 1.48496 * 109.47169 * 205.38582 * 24 22 20 27 27 H 1.48505 * 109.47427 * 325.39016 * 24 22 20 28 28 N 1.28881 * 125.45006 * 179.71718 * 5 2 1 29 29 H 1.09001 * 109.47334 * 60.00460 * 1 2 3 30 30 H 1.08995 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47689 * 300.00135 * 1 2 3 32 32 H 1.09004 * 109.46943 * 59.99407 * 3 2 1 33 33 H 1.08999 * 109.47538 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46961 * 300.00316 * 3 2 1 35 35 H 1.08998 * 109.47380 * 59.99890 * 4 2 1 36 36 H 1.08999 * 109.47229 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.46948 * 299.99965 * 4 2 1 38 38 H 1.09006 * 109.46399 * 210.01881 * 9 8 7 39 39 H 1.08998 * 109.47307 * 330.01762 * 9 8 7 40 40 H 0.96996 * 119.99896 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.47001 * 304.61970 * 13 12 10 42 42 H 1.08999 * 109.46956 * 64.62084 * 13 12 10 43 43 H 1.08999 * 110.72410 * 336.75563 * 16 14 13 44 44 H 1.09006 * 110.72109 * 100.02615 * 16 14 13 45 45 H 1.08998 * 110.89061 * 277.26986 * 17 16 14 46 46 H 1.08995 * 111.03723 * 153.47009 * 17 16 14 47 47 H 1.08999 * 110.36289 * 204.23637 * 18 17 16 48 48 H 1.08994 * 110.46258 * 81.96159 * 18 17 16 49 49 H 0.97000 * 120.00002 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 2.0184 -0.6906 -1.1961 6 7 1.2782 -1.2171 -2.1091 7 7 2.0400 -1.7373 -3.0108 8 6 3.3018 -1.5227 -2.6375 9 6 4.5420 -1.9502 -3.3792 10 6 4.9563 -0.8612 -4.3349 11 8 4.3079 0.1612 -4.4072 12 7 6.0473 -1.0235 -5.1095 13 6 6.4497 0.0350 -6.0391 14 6 7.6396 -0.4439 -6.8729 15 1 8.4722 -0.6999 -6.2177 16 6 8.0688 0.6628 -7.8590 17 6 8.4342 -0.1384 -9.1395 18 6 7.3926 -1.2845 -9.0995 19 7 7.2519 -1.6169 -7.6702 20 6 6.8306 -2.8192 -7.1681 21 1 7.1029 -3.1105 -6.1644 22 6 6.0534 -3.6635 -7.9491 23 7 5.9856 -4.9467 -7.6642 24 14 5.1038 -2.9786 -9.4046 25 1 5.9881 -2.9362 -10.5969 26 1 3.9342 -3.8490 -9.6865 27 1 4.6343 -1.6058 -9.0877 28 7 3.2574 -0.8634 -1.5059 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 -1.7489 1.2493 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -0.2073 2.1392 38 1 5.3463 -2.1335 -2.6666 39 1 4.3353 -2.8638 -3.9366 40 1 6.5656 -1.8413 -5.0520 41 1 5.6163 0.2747 -6.6994 42 1 6.7346 0.9238 -5.4762 43 1 7.2428 1.3464 -8.0549 44 1 8.9359 1.2031 -7.4788 45 1 9.4492 -0.5305 -9.0762 46 1 8.3081 0.4730 -10.0329 47 1 7.7574 -2.1481 -9.6556 48 1 6.4393 -0.9473 -9.5062 49 1 5.4428 -5.5367 -8.2102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567364338.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:33 Heat of formation + Delta-G solvation = 112.115030 kcal Electronic energy + Delta-G solvation = -29869.277032 eV Core-core repulsion = 25870.384905 eV Total energy + Delta-G solvation = -3998.892127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.16906 -39.27319 -37.97811 -37.67627 -33.94183 -33.37280 -33.02881 -32.66599 -30.11761 -29.99816 -28.69829 -27.92401 -27.73352 -24.98735 -24.47652 -23.80886 -22.27313 -21.09381 -20.62957 -19.88403 -19.37493 -17.42197 -17.16820 -16.94405 -16.18456 -15.85450 -15.49163 -15.08592 -14.80738 -14.62399 -14.45711 -14.10439 -13.57436 -13.39304 -13.30965 -13.18558 -13.02663 -12.85983 -12.78059 -12.69020 -12.54883 -12.22773 -12.02340 -11.81667 -11.78981 -11.66420 -11.34875 -11.27415 -11.17163 -10.94069 -10.71518 -10.68928 -10.66515 -10.51557 -10.08703 -10.05548 -9.97246 -9.48983 -9.28814 -8.73530 -8.34770 -7.08330 -6.02172 -3.35710 1.41721 1.89996 2.36416 3.14402 3.34606 3.50377 3.54153 3.69712 3.90665 4.18202 4.25748 4.28445 4.51984 4.68700 4.89328 5.01685 5.03846 5.11143 5.16962 5.21003 5.24477 5.25034 5.28078 5.28725 5.39506 5.46808 5.56348 5.57143 5.67376 5.71545 5.75867 5.82812 5.91854 5.96761 6.04909 6.09017 6.11556 6.24584 6.31404 6.36700 6.38552 6.64053 6.76900 6.83702 7.09227 7.64945 8.12918 8.23338 8.59154 8.70211 8.80614 9.61648 10.13472 11.12802 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.002862 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.180961 B = 9780.981159 C =10641.489076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.135 5.135 6 N -0.067 5.067 7 N -0.273 5.273 8 C 0.196 3.804 9 C -0.048 4.048 10 C 0.520 3.480 11 O -0.556 6.556 12 N -0.698 5.698 13 C 0.116 3.884 14 C 0.145 3.855 15 H 0.050 0.950 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.111 3.889 19 N -0.602 5.602 20 C -0.245 4.245 21 H 0.089 0.911 22 C 0.032 3.968 23 N -0.903 5.903 24 Si 0.883 3.117 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.275 1.275 28 N -0.299 5.299 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.412 0.588 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.024 0.976 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 10.870 15.762 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.099 3.901 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.049 5.049 6 N -0.060 5.060 7 N -0.143 5.143 8 C -0.087 4.087 9 C -0.091 4.091 10 C 0.304 3.696 11 O -0.435 6.435 12 N -0.351 5.351 13 C -0.010 4.010 14 C 0.038 3.962 15 H 0.068 0.932 16 C -0.162 4.162 17 C -0.169 4.169 18 C -0.013 4.013 19 N -0.327 5.327 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.168 4.168 23 N -0.545 5.545 24 Si 0.714 3.286 25 H -0.213 1.213 26 H -0.230 1.230 27 H -0.201 1.201 28 N -0.149 5.149 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.251 0.749 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.042 0.958 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.420 11.406 15.856 20.027 hybrid contribution -0.019 -0.188 -1.068 1.085 sum -4.439 11.218 14.788 19.085 Atomic orbital electron populations 1.22073 0.90299 1.04525 1.04125 1.21296 0.96300 0.92743 0.79792 1.22222 1.03379 0.92241 1.03822 1.22216 1.03304 1.01002 0.95039 1.50361 1.01283 1.35270 1.17952 1.78880 1.22139 1.09295 0.95681 1.75850 1.00939 1.18727 1.18830 1.24687 0.94919 0.97913 0.91141 1.19908 0.91510 1.00117 0.97520 1.19993 0.80873 0.87448 0.81290 1.90664 1.53781 1.29880 1.69220 1.45981 1.28201 1.21830 1.39086 1.21916 0.98626 0.89116 0.91318 1.21318 0.94204 0.87944 0.92725 0.93226 1.22562 1.00660 0.97026 0.95962 1.22757 0.99775 0.97441 0.96928 1.21937 0.95601 0.96218 0.87584 1.44868 1.78226 1.09709 0.99927 1.18363 1.26987 0.90395 1.01413 0.89343 1.25045 0.98236 0.95296 0.98251 1.69796 1.41435 1.02311 1.41005 0.86943 0.80099 0.78526 0.83056 1.21343 1.23044 1.20084 1.74511 1.03085 1.19561 1.17777 0.90613 0.90635 0.89471 0.89452 0.90407 0.91344 0.91442 0.90427 0.89393 0.86304 0.85061 0.74892 0.92015 0.92997 0.91427 0.91286 0.91239 0.91752 0.92415 0.95841 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.91 37.16 0.29 -0.82 16 2 C 0.18 1.67 1.30 -131.82 -0.17 1.50 16 3 C -0.16 -1.29 8.66 37.16 0.32 -0.97 16 4 C -0.16 -1.11 8.67 37.16 0.32 -0.79 16 5 N -0.14 -1.94 3.73 0.48 0.00 -1.93 16 6 N -0.07 -1.13 12.24 60.35 0.74 -0.39 16 7 N -0.27 -5.25 12.50 32.45 0.41 -4.84 16 8 C 0.20 3.48 6.86 -156.62 -1.07 2.41 16 9 C -0.05 -0.77 6.33 -29.04 -0.18 -0.95 16 10 C 0.52 10.02 7.82 -10.99 -0.09 9.93 16 11 O -0.56 -12.62 16.03 5.55 0.09 -12.53 16 12 N -0.70 -13.02 4.85 -60.30 -0.29 -13.31 16 13 C 0.12 2.15 5.17 -4.04 -0.02 2.13 16 14 C 0.15 2.62 3.33 -66.96 -0.22 2.39 16 15 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.12 -1.85 6.50 -24.76 -0.16 -2.01 16 17 C -0.13 -2.07 7.09 -24.44 -0.17 -2.24 16 18 C 0.11 2.32 4.74 -2.53 -0.01 2.31 16 19 N -0.60 -13.32 2.88 -162.58 -0.47 -13.78 16 20 C -0.24 -6.21 8.88 -15.06 -0.13 -6.34 16 21 H 0.09 2.26 6.49 -52.49 -0.34 1.92 16 22 C 0.03 0.88 5.44 -17.43 -0.09 0.78 16 23 N -0.90 -26.32 13.97 55.49 0.78 -25.54 16 24 Si 0.88 22.61 24.32 -169.99 -4.13 18.48 16 25 H -0.29 -7.07 6.70 56.52 0.38 -6.69 16 26 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 27 H -0.28 -7.18 6.70 56.52 0.38 -6.80 16 28 N -0.30 -4.80 11.83 32.47 0.38 -4.41 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.13 2.09 8.14 -51.93 -0.42 1.66 16 40 H 0.41 7.52 5.84 -40.82 -0.24 7.28 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.28 7.12 -51.93 -0.37 0.91 16 48 H 0.02 0.53 5.43 -51.93 -0.28 0.25 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -34.92 390.99 -6.01 -40.93 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.01 Total: 4.11 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.40 Total: 7.33 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: 1.55 Total: -64.22 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.13 Total: 18.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.92 -6.01 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567364338.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.049 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds