Wall clock time and date at job start Tue Mar 31 2020 19:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47134 * 2 1 4 4 C 1.52998 * 109.47140 * 119.99965 * 2 1 3 5 5 N 1.46497 * 109.47501 * 240.00011 * 2 1 3 6 6 N 1.28788 * 125.44513 * 0.02562 * 5 2 1 7 7 N 1.28995 * 108.72362 * 179.97438 * 6 5 2 8 8 C 1.33323 * 107.35558 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.54529 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47263 * 90.02855 * 9 8 7 11 11 O 1.21284 * 119.99997 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99961 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00060 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47033 * 184.61980 * 13 12 10 15 15 H 1.08994 * 109.87939 * 300.84613 * 14 13 12 16 16 C 1.54319 * 109.88314 * 179.82747 * 14 13 12 17 17 C 1.55406 * 102.83285 * 218.48093 * 16 14 13 18 18 C 1.54914 * 101.66031 * 35.34038 * 17 16 14 19 19 N 1.47030 * 109.88477 * 61.86372 * 14 13 12 20 20 C 1.36940 * 125.64654 * 298.32073 * 19 14 13 21 21 H 1.08001 * 119.99775 * 336.74923 * 20 19 14 22 22 C 1.38810 * 120.00331 * 156.74440 * 20 19 14 23 23 N 1.31612 * 120.00211 * 159.22047 * 22 20 19 24 24 Si 1.86800 * 119.99752 * 339.22478 * 22 20 19 25 25 H 1.48501 * 109.47112 * 85.38722 * 24 22 20 26 26 H 1.48496 * 109.47169 * 205.38582 * 24 22 20 27 27 H 1.48505 * 109.47427 * 325.39016 * 24 22 20 28 28 N 1.28881 * 125.45006 * 179.71718 * 5 2 1 29 29 H 1.09001 * 109.47334 * 60.00460 * 1 2 3 30 30 H 1.08995 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47689 * 300.00135 * 1 2 3 32 32 H 1.09004 * 109.46943 * 59.99407 * 3 2 1 33 33 H 1.08999 * 109.47538 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46961 * 300.00316 * 3 2 1 35 35 H 1.08998 * 109.47380 * 59.99890 * 4 2 1 36 36 H 1.08999 * 109.47229 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.46948 * 299.99965 * 4 2 1 38 38 H 1.09006 * 109.46399 * 210.01881 * 9 8 7 39 39 H 1.08998 * 109.47307 * 330.01762 * 9 8 7 40 40 H 0.96996 * 119.99896 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.47001 * 304.61970 * 13 12 10 42 42 H 1.08999 * 109.46956 * 64.62084 * 13 12 10 43 43 H 1.08999 * 110.72410 * 336.75563 * 16 14 13 44 44 H 1.09006 * 110.72109 * 100.02615 * 16 14 13 45 45 H 1.08998 * 110.89061 * 277.26986 * 17 16 14 46 46 H 1.08995 * 111.03723 * 153.47009 * 17 16 14 47 47 H 1.08999 * 110.36289 * 204.23637 * 18 17 16 48 48 H 1.08994 * 110.46258 * 81.96159 * 18 17 16 49 49 H 0.97000 * 120.00002 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 2.0184 -0.6906 -1.1961 6 7 1.2782 -1.2171 -2.1091 7 7 2.0400 -1.7373 -3.0108 8 6 3.3018 -1.5227 -2.6375 9 6 4.5420 -1.9502 -3.3792 10 6 4.9563 -0.8612 -4.3349 11 8 4.3079 0.1612 -4.4072 12 7 6.0473 -1.0235 -5.1095 13 6 6.4497 0.0350 -6.0391 14 6 7.6396 -0.4439 -6.8729 15 1 8.4722 -0.6999 -6.2177 16 6 8.0688 0.6628 -7.8590 17 6 8.4342 -0.1384 -9.1395 18 6 7.3926 -1.2845 -9.0995 19 7 7.2519 -1.6169 -7.6702 20 6 6.8306 -2.8192 -7.1681 21 1 7.1029 -3.1105 -6.1644 22 6 6.0534 -3.6635 -7.9491 23 7 5.9856 -4.9467 -7.6642 24 14 5.1038 -2.9786 -9.4046 25 1 5.9881 -2.9362 -10.5969 26 1 3.9342 -3.8490 -9.6865 27 1 4.6343 -1.6058 -9.0877 28 7 3.2574 -0.8634 -1.5059 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 -1.7489 1.2493 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -0.2073 2.1392 38 1 5.3463 -2.1335 -2.6666 39 1 4.3353 -2.8638 -3.9366 40 1 6.5656 -1.8413 -5.0520 41 1 5.6163 0.2747 -6.6994 42 1 6.7346 0.9238 -5.4762 43 1 7.2428 1.3464 -8.0549 44 1 8.9359 1.2031 -7.4788 45 1 9.4492 -0.5305 -9.0762 46 1 8.3081 0.4730 -10.0329 47 1 7.7574 -2.1481 -9.6556 48 1 6.4393 -0.9473 -9.5062 49 1 5.4428 -5.5367 -8.2102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567364338.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:31 Heat of formation + Delta-G solvation = 86.316080 kcal Electronic energy + Delta-G solvation = -29870.395759 eV Core-core repulsion = 25870.384905 eV Total energy + Delta-G solvation = -4000.010853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.40772 -40.82137 -39.45290 -38.59075 -35.50046 -34.68403 -34.59128 -34.18202 -31.76378 -31.50710 -30.01590 -28.52316 -28.42197 -26.58321 -25.69105 -25.48108 -23.64098 -22.53231 -21.64361 -21.44861 -20.85673 -19.05927 -18.43400 -18.06036 -17.61011 -17.36455 -17.10293 -16.84301 -16.27254 -15.55592 -15.25644 -15.20357 -15.17115 -14.93462 -14.78984 -14.58145 -14.43097 -14.14481 -13.97982 -13.44311 -13.39551 -13.24874 -13.22968 -13.00633 -12.90388 -12.86269 -12.77818 -12.67000 -12.57425 -12.31754 -12.16623 -12.04105 -11.95973 -11.88458 -11.75358 -11.59383 -11.35328 -11.29529 -10.79412 -10.75714 -9.93664 -8.97588 -8.14377 -5.39984 0.19174 0.92355 1.02730 1.26411 1.39313 1.43772 1.61697 2.31735 2.43635 2.80996 3.13851 3.16055 3.32158 3.51816 3.57895 3.65807 3.82715 3.88040 4.02754 4.16143 4.22036 4.32472 4.39077 4.44668 4.47564 4.50857 4.52251 4.59876 4.64780 4.67995 4.70809 4.72029 4.74334 4.78145 4.83158 5.00879 5.03059 5.04131 5.11059 5.16180 5.21051 5.30267 5.35606 5.49907 5.57183 5.75730 6.14558 6.62245 6.80141 7.26012 7.31278 7.59449 8.19117 9.04066 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.002862 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.180961 B = 9780.981159 C =10641.489076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 C -0.154 4.154 4 C -0.151 4.151 5 N -0.118 5.118 6 N -0.079 5.079 7 N -0.317 5.317 8 C 0.180 3.820 9 C -0.042 4.042 10 C 0.518 3.482 11 O -0.593 6.593 12 N -0.697 5.697 13 C 0.119 3.881 14 C 0.142 3.858 15 H 0.068 0.932 16 C -0.115 4.115 17 C -0.117 4.117 18 C 0.099 3.901 19 N -0.618 5.618 20 C -0.210 4.210 21 H 0.086 0.914 22 C -0.021 4.021 23 N -0.944 5.944 24 Si 0.922 3.078 25 H -0.275 1.275 26 H -0.319 1.319 27 H -0.287 1.287 28 N -0.298 5.298 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.130 0.870 40 H 0.414 0.586 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.007 0.993 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 13.301 17.712 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.080 3.920 3 C -0.212 4.212 4 C -0.210 4.210 5 N -0.034 5.034 6 N -0.071 5.071 7 N -0.186 5.186 8 C -0.103 4.103 9 C -0.085 4.085 10 C 0.303 3.697 11 O -0.475 6.475 12 N -0.349 5.349 13 C -0.007 4.007 14 C 0.036 3.964 15 H 0.085 0.915 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.025 4.025 19 N -0.344 5.344 20 C -0.338 4.338 21 H 0.104 0.896 22 C -0.216 4.216 23 N -0.591 5.591 24 Si 0.754 3.246 25 H -0.202 1.202 26 H -0.248 1.248 27 H -0.214 1.214 28 N -0.149 5.149 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.174 0.826 39 H 0.148 0.852 40 H 0.253 0.747 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.057 0.943 48 H 0.025 0.975 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.044 13.875 17.786 22.762 hybrid contribution -0.427 -0.787 -1.520 1.764 sum -3.471 13.088 16.266 21.164 Atomic orbital electron populations 1.22139 0.88718 1.04469 1.05371 1.22078 0.97711 0.93310 0.78881 1.22261 1.02509 0.91480 1.04984 1.22252 1.02684 1.00912 0.95115 1.51032 1.00638 1.33540 1.18183 1.78780 1.22239 1.09930 0.96138 1.75796 1.01908 1.20526 1.20402 1.24926 0.94937 0.98609 0.91855 1.19949 0.92286 0.98585 0.97642 1.20460 0.80329 0.87536 0.81340 1.90639 1.54848 1.31628 1.70435 1.46020 1.28103 1.21942 1.38843 1.21898 0.97641 0.89991 0.91175 1.21576 0.94030 0.87517 0.93265 0.91469 1.22611 1.02301 0.95969 0.94427 1.22715 0.98540 0.95626 0.98606 1.22035 0.96515 0.97596 0.86401 1.45102 1.77661 1.10211 1.01419 1.18526 1.23783 0.90903 1.00629 0.89615 1.25438 1.00338 0.95674 1.00190 1.69870 1.43578 1.03138 1.42505 0.86302 0.79060 0.76758 0.82432 1.20165 1.24833 1.21412 1.74466 1.03975 1.19228 1.17221 0.92209 0.91355 0.85321 0.85166 0.91727 0.93255 0.92077 0.91387 0.85384 0.82622 0.85189 0.74661 0.95196 0.90654 0.91128 0.87347 0.89851 0.89119 0.94328 0.97535 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 7.91 71.98 0.57 -1.35 16 2 C 0.16 2.69 1.30 3.60 0.00 2.70 16 3 C -0.15 -2.22 8.66 71.98 0.62 -1.60 16 4 C -0.15 -1.75 8.67 71.98 0.62 -1.13 16 5 N -0.12 -3.36 3.73 -152.40 -0.57 -3.92 16 6 N -0.08 -2.72 12.24 37.02 0.45 -2.27 16 7 N -0.32 -12.60 12.50 -51.26 -0.64 -13.25 16 8 C 0.18 6.48 6.86 138.55 0.95 7.43 16 9 C -0.04 -1.37 6.33 29.10 0.18 -1.18 16 10 C 0.52 20.03 7.82 87.66 0.69 20.72 16 11 O -0.59 -27.33 16.03 -3.04 -0.05 -27.38 16 12 N -0.70 -25.60 4.85 -463.07 -2.24 -27.84 16 13 C 0.12 4.23 5.17 86.38 0.45 4.68 16 14 C 0.14 4.74 3.33 45.34 0.15 4.90 16 15 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.11 -2.96 6.50 31.87 0.21 -2.76 16 17 C -0.12 -3.26 7.09 32.08 0.23 -3.03 16 18 C 0.10 4.00 4.74 86.86 0.41 4.42 16 19 N -0.62 -26.67 2.88 -668.29 -1.92 -28.59 16 20 C -0.21 -10.63 8.88 84.03 0.75 -9.89 16 21 H 0.09 4.36 6.49 -2.91 -0.02 4.35 16 22 C -0.02 -1.17 5.44 84.86 0.46 -0.71 16 23 N -0.94 -56.61 13.97 21.65 0.30 -56.30 16 24 Si 0.92 47.99 24.32 68.60 1.67 49.66 16 25 H -0.28 -13.56 6.70 99.48 0.67 -12.89 16 26 H -0.32 -17.28 7.11 99.48 0.71 -16.57 16 27 H -0.29 -15.29 6.70 99.48 0.67 -14.62 16 28 N -0.30 -9.53 11.83 -51.20 -0.61 -10.14 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.16 3.74 8.14 -2.38 -0.02 3.72 16 39 H 0.13 4.24 8.14 -2.39 -0.02 4.22 16 40 H 0.41 14.80 5.84 -92.71 -0.54 14.26 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.07 1.81 7.85 -2.39 -0.02 1.80 16 44 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 47 H 0.04 1.69 7.12 -2.39 -0.02 1.67 16 48 H 0.01 0.31 5.43 -2.39 -0.01 0.29 16 49 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -80.02 390.99 3.02 -77.01 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.33 Total: 19.83 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 6.29 Total: 23.20 kcal Atomic # 7 Polarization: -137.09 SS G_CDS: -5.22 Total: -142.31 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.67 Total: 49.66 kcal Total: -80.02 3.02 -77.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567364338.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.321 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds