Wall clock time and date at job start Tue Mar 31 2020 20:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.36933 * 119.99756 * 2 1 4 4 H 1.07994 * 120.00280 * 203.31926 * 3 2 1 5 5 C 1.38812 * 120.00014 * 23.31538 * 3 2 1 6 6 N 1.31618 * 120.00186 * 14.42434 * 5 3 2 7 7 Si 1.86799 * 120.00214 * 194.42010 * 5 3 2 8 8 H 1.48505 * 109.47095 * 89.99882 * 7 5 3 9 9 H 1.48495 * 109.47651 * 210.00357 * 7 5 3 10 10 H 1.48511 * 109.47088 * 330.00446 * 7 5 3 11 11 C 1.46498 * 120.00112 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46908 * 89.99963 * 11 2 1 13 13 H 1.08995 * 110.88944 * 57.42758 * 12 11 2 14 14 C 1.55165 * 111.03492 * 181.33016 * 12 11 2 15 15 C 1.54324 * 102.94022 * 153.58867 * 14 12 11 16 16 N 1.47019 * 107.27485 * 337.80873 * 15 14 12 17 17 C 1.34770 * 125.64972 * 179.20707 * 16 15 14 18 18 O 1.21541 * 120.00230 * 179.69214 * 17 16 15 19 19 C 1.48004 * 120.00190 * 359.68746 * 17 16 15 20 20 N 1.34197 * 126.69609 * 359.69046 * 19 17 16 21 21 N 1.28982 * 107.25110 * 179.83445 * 20 19 17 22 22 N 1.28720 * 108.98660 * 0.43524 * 21 20 19 23 23 C 1.46501 * 125.31793 * 179.69184 * 22 21 20 24 24 C 1.53011 * 109.47012 * 240.03649 * 23 22 21 25 25 C 1.52994 * 109.47382 * 0.03695 * 23 22 21 26 26 C 1.52994 * 109.47388 * 120.03933 * 23 22 21 27 27 N 1.28874 * 109.36219 * 359.71999 * 22 21 20 28 28 C 1.47424 * 108.70347 * 358.93764 * 16 15 14 29 29 H 1.08992 * 109.46969 * 275.18255 * 1 2 3 30 30 H 1.08996 * 109.47020 * 35.18920 * 1 2 3 31 31 H 1.08998 * 109.46677 * 155.18700 * 1 2 3 32 32 H 0.97001 * 120.00545 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.46847 * 330.00216 * 11 2 1 34 34 H 1.08995 * 109.46863 * 209.99868 * 11 2 1 35 35 H 1.08993 * 110.72097 * 271.95450 * 14 12 11 36 36 H 1.08997 * 110.71915 * 35.05401 * 14 12 11 37 37 H 1.09004 * 109.88227 * 218.38946 * 15 14 12 38 38 H 1.09001 * 109.87838 * 97.22825 * 15 14 12 39 39 H 1.08996 * 109.46789 * 59.99690 * 24 23 22 40 40 H 1.08998 * 109.47115 * 179.97438 * 24 23 22 41 41 H 1.08996 * 109.47082 * 300.00224 * 24 23 22 42 42 H 1.08994 * 109.47191 * 60.00014 * 25 23 22 43 43 H 1.08998 * 109.47537 * 180.02562 * 25 23 22 44 44 H 1.09002 * 109.47313 * 300.00067 * 25 23 22 45 45 H 1.09000 * 109.47351 * 59.99947 * 26 23 22 46 46 H 1.09005 * 109.47382 * 179.97438 * 26 23 22 47 47 H 1.08998 * 109.47484 * 299.99789 * 26 23 22 48 48 H 1.09005 * 110.36987 * 142.96589 * 28 16 15 49 49 H 1.09000 * 110.37268 * 265.18387 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1635 1.2242 -0.3702 5 6 1.5406 2.3389 0.4758 6 7 0.4322 2.2549 1.1806 7 14 2.2941 4.0099 0.1160 8 1 1.7393 4.5396 -1.1557 9 1 1.9744 4.9461 1.2234 10 1 3.7678 3.8725 -0.0062 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 1 3.0021 -0.9449 -1.9921 14 6 3.1989 -3.0694 -1.4864 15 6 2.7699 -3.6560 -2.8478 16 7 1.5092 -3.0017 -3.2274 17 6 0.8167 -3.2288 -4.3610 18 8 -0.2213 -2.6317 -4.5691 19 6 1.3202 -4.2052 -5.3529 20 7 2.4457 -4.9305 -5.2641 21 7 2.5174 -5.6571 -6.3274 22 7 1.4974 -5.4104 -7.0727 23 6 1.2257 -6.0343 -8.3701 24 6 1.1638 -4.9545 -9.4524 25 6 2.3419 -7.0264 -8.7027 26 6 -0.1125 -6.7735 -8.3103 27 7 0.7528 -4.5282 -6.4997 28 6 1.1246 -2.0609 -2.1595 29 1 -0.3633 0.0928 1.0234 30 1 -0.3633 0.8398 -0.5922 31 1 -0.3632 -0.9328 -0.4313 32 1 0.0068 3.0606 1.5134 33 1 1.6085 -2.0286 0.5129 34 1 3.1500 -1.1385 0.5133 35 1 4.2778 -2.9183 -1.4543 36 1 2.8763 -3.7125 -0.6676 37 1 2.6166 -4.7313 -2.7564 38 1 3.5343 -3.4508 -3.5972 39 1 2.1171 -4.4279 -9.4950 40 1 0.9621 -5.4188 -10.4177 41 1 0.3686 -4.2478 -9.2155 42 1 2.3859 -7.7956 -7.9317 43 1 2.1400 -7.4903 -9.6681 44 1 3.2953 -6.4998 -8.7454 45 1 -0.9078 -6.0668 -8.0734 46 1 -0.3149 -7.2374 -9.2757 47 1 -0.0686 -7.5428 -7.5393 48 1 0.6757 -1.1644 -2.5872 49 1 0.4319 -2.5371 -1.4656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567730233.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:32 Heat of formation + Delta-G solvation = 123.379927 kcal Electronic energy + Delta-G solvation = -29559.657166 eV Core-core repulsion = 25561.253521 eV Total energy + Delta-G solvation = -3998.403644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.62379 -39.88871 -38.08587 -37.55074 -35.33211 -33.75321 -32.89742 -32.05809 -30.61269 -28.72727 -28.21614 -28.15056 -26.78009 -25.74576 -24.75618 -24.57205 -22.85021 -21.16078 -21.00220 -19.94499 -19.69680 -17.68289 -17.61538 -16.94415 -16.54344 -16.09010 -15.64989 -14.91678 -14.78590 -14.72939 -14.36865 -14.20192 -13.60370 -13.49810 -13.47532 -13.12592 -13.08970 -12.95889 -12.79108 -12.56625 -12.44749 -12.42886 -12.24059 -12.09645 -11.83659 -11.66815 -11.41985 -11.21763 -11.17352 -10.90093 -10.88695 -10.68710 -10.56305 -10.45763 -10.28686 -10.22638 -10.01053 -9.82199 -9.78758 -8.54357 -8.48124 -6.68694 -5.66847 -3.14116 0.83981 1.34462 1.40326 2.69637 3.09363 3.42527 3.49032 3.49710 3.61975 3.82627 3.91662 4.02475 4.33238 4.53796 4.77562 4.83762 4.84664 4.86655 4.95168 5.00361 5.04483 5.05709 5.10701 5.20726 5.31241 5.42428 5.47371 5.49324 5.54319 5.60352 5.70568 5.81981 5.86580 5.98027 6.03470 6.16798 6.20083 6.27768 6.41464 6.54671 6.74061 6.82680 6.91763 7.42953 7.46599 7.78865 7.86377 7.89469 8.12770 8.45473 9.28812 9.92721 10.41590 11.37504 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002280 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.702962 B =12278.298800 C =12580.824124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.601 5.601 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.163 3.837 12 C -0.118 4.118 13 H 0.084 0.916 14 C -0.129 4.129 15 C 0.106 3.894 16 N -0.595 5.595 17 C 0.623 3.377 18 O -0.511 6.511 19 C 0.135 3.865 20 N -0.253 5.253 21 N -0.060 5.060 22 N -0.126 5.126 23 C 0.176 3.824 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.160 4.160 27 N -0.247 5.247 28 C 0.122 3.878 29 H 0.031 0.969 30 H 0.038 0.962 31 H 0.002 0.998 32 H 0.252 0.748 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 -21.925 -19.833 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.324 5.324 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.035 3.965 12 C -0.140 4.140 13 H 0.102 0.898 14 C -0.167 4.167 15 C -0.017 4.017 16 N -0.329 5.329 17 C 0.405 3.595 18 O -0.384 6.384 19 C -0.149 4.149 20 N -0.128 5.128 21 N -0.053 5.053 22 N -0.041 5.041 23 C 0.096 3.904 24 C -0.219 4.219 25 C -0.211 4.211 26 C -0.219 4.219 27 N -0.100 5.100 28 C 0.002 3.998 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.243 -21.885 -20.180 29.945 hybrid contribution 0.079 1.268 -0.093 1.274 sum 3.322 -20.617 -20.273 29.105 Atomic orbital electron populations 1.20855 0.82679 0.95595 0.99475 1.43901 1.01798 1.00655 1.86017 1.19155 0.98467 0.85640 1.35154 0.91467 1.25015 0.98085 0.98488 0.98052 1.70069 1.20619 1.27183 1.37167 0.86293 0.78670 0.84364 0.77428 1.21557 1.21841 1.20516 1.20659 0.96533 0.88559 0.90787 1.23252 0.94048 0.95514 1.01200 0.89778 1.22718 1.01040 0.97422 0.95569 1.22167 0.85186 0.97055 0.97274 1.48345 1.24330 1.42012 1.18210 1.15672 0.83556 0.80721 0.79591 1.90868 1.22571 1.48786 1.76128 1.25318 0.92473 1.02176 0.94903 1.76243 1.16723 1.06173 1.13630 1.78870 1.09508 1.18476 0.98418 1.50741 1.12150 1.24008 1.17222 1.21513 0.98992 0.94164 0.75730 1.22267 1.04362 0.98072 0.97227 1.22102 0.97073 0.98361 1.03526 1.22262 0.94295 1.01023 1.04311 1.75001 1.20472 1.06503 1.07996 1.22508 0.98096 0.92056 0.87155 0.95088 0.94284 0.97984 0.93799 0.94250 0.92723 0.90066 0.90580 0.91022 0.90833 0.91259 0.88941 0.90151 0.90489 0.89086 0.90480 0.90167 0.88949 0.91279 0.89653 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.61 59.85 0.52 4.43 16 2 N -0.60 -14.82 2.84 -181.12 -0.51 -15.33 16 3 C -0.25 -6.94 9.64 -15.06 -0.15 -7.08 16 4 H 0.07 1.79 7.87 -52.49 -0.41 1.37 16 5 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 6 N -0.91 -26.73 10.81 55.49 0.60 -26.13 16 7 Si 0.90 22.14 29.58 -169.99 -5.03 17.12 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.16 3.16 5.17 -4.04 -0.02 3.13 16 12 C -0.12 -1.96 3.29 -88.46 -0.29 -2.25 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 14 C -0.13 -1.63 6.42 -24.89 -0.16 -1.79 16 15 C 0.11 1.39 5.54 -3.07 -0.02 1.37 16 16 N -0.60 -9.59 3.33 -171.57 -0.57 -10.16 16 17 C 0.62 10.90 7.87 -12.26 -0.10 10.80 16 18 O -0.51 -10.53 17.36 5.33 0.09 -10.43 16 19 C 0.14 2.09 7.97 -156.24 -1.24 0.84 16 20 N -0.25 -3.55 10.09 32.10 0.32 -3.22 16 21 N -0.06 -0.74 12.21 60.35 0.74 0.00 16 22 N -0.13 -1.39 3.72 0.52 0.00 -1.39 16 23 C 0.18 1.14 1.30 -131.82 -0.17 0.97 16 24 C -0.16 -0.86 8.66 37.16 0.32 -0.53 16 25 C -0.15 -0.65 7.90 37.15 0.29 -0.36 16 26 C -0.16 -0.82 8.66 37.15 0.32 -0.50 16 27 N -0.25 -3.48 11.85 32.11 0.38 -3.10 16 28 C 0.12 2.13 4.95 -2.53 -0.01 2.12 16 29 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16 30 H 0.04 1.05 7.40 -51.93 -0.38 0.66 16 31 H 0.00 0.04 6.19 -51.93 -0.32 -0.29 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.04 0.71 8.03 -51.93 -0.42 0.30 16 34 H 0.05 1.05 8.04 -51.93 -0.42 0.64 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 37 H 0.07 0.88 7.78 -51.93 -0.40 0.47 16 38 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 1.72 8.04 -51.93 -0.42 1.30 16 49 H 0.07 1.23 7.21 -51.93 -0.37 0.85 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -33.81 395.60 -6.94 -40.75 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -8.13 Total: -5.19 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -0.79 Total: 11.13 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.96 Total: -59.33 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.81 -6.94 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567730233.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.132 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds