Wall clock time and date at job start Tue Mar 31 2020 20:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.36933 * 119.99756 * 2 1 4 4 H 1.07994 * 120.00280 * 203.31926 * 3 2 1 5 5 C 1.38812 * 120.00014 * 23.31538 * 3 2 1 6 6 N 1.31618 * 120.00186 * 14.42434 * 5 3 2 7 7 Si 1.86799 * 120.00214 * 194.42010 * 5 3 2 8 8 H 1.48505 * 109.47095 * 89.99882 * 7 5 3 9 9 H 1.48495 * 109.47651 * 210.00357 * 7 5 3 10 10 H 1.48511 * 109.47088 * 330.00446 * 7 5 3 11 11 C 1.46498 * 120.00112 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46908 * 89.99963 * 11 2 1 13 13 H 1.08995 * 110.88944 * 57.42758 * 12 11 2 14 14 C 1.55165 * 111.03492 * 181.33016 * 12 11 2 15 15 C 1.54324 * 102.94022 * 153.58867 * 14 12 11 16 16 N 1.47019 * 107.27485 * 337.80873 * 15 14 12 17 17 C 1.34770 * 125.64972 * 179.20707 * 16 15 14 18 18 O 1.21541 * 120.00230 * 179.69214 * 17 16 15 19 19 C 1.48004 * 120.00190 * 359.68746 * 17 16 15 20 20 N 1.34197 * 126.69609 * 359.69046 * 19 17 16 21 21 N 1.28982 * 107.25110 * 179.83445 * 20 19 17 22 22 N 1.28720 * 108.98660 * 0.43524 * 21 20 19 23 23 C 1.46501 * 125.31793 * 179.69184 * 22 21 20 24 24 C 1.53011 * 109.47012 * 240.03649 * 23 22 21 25 25 C 1.52994 * 109.47382 * 0.03695 * 23 22 21 26 26 C 1.52994 * 109.47388 * 120.03933 * 23 22 21 27 27 N 1.28874 * 109.36219 * 359.71999 * 22 21 20 28 28 C 1.47424 * 108.70347 * 358.93764 * 16 15 14 29 29 H 1.08992 * 109.46969 * 275.18255 * 1 2 3 30 30 H 1.08996 * 109.47020 * 35.18920 * 1 2 3 31 31 H 1.08998 * 109.46677 * 155.18700 * 1 2 3 32 32 H 0.97001 * 120.00545 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.46847 * 330.00216 * 11 2 1 34 34 H 1.08995 * 109.46863 * 209.99868 * 11 2 1 35 35 H 1.08993 * 110.72097 * 271.95450 * 14 12 11 36 36 H 1.08997 * 110.71915 * 35.05401 * 14 12 11 37 37 H 1.09004 * 109.88227 * 218.38946 * 15 14 12 38 38 H 1.09001 * 109.87838 * 97.22825 * 15 14 12 39 39 H 1.08996 * 109.46789 * 59.99690 * 24 23 22 40 40 H 1.08998 * 109.47115 * 179.97438 * 24 23 22 41 41 H 1.08996 * 109.47082 * 300.00224 * 24 23 22 42 42 H 1.08994 * 109.47191 * 60.00014 * 25 23 22 43 43 H 1.08998 * 109.47537 * 180.02562 * 25 23 22 44 44 H 1.09002 * 109.47313 * 300.00067 * 25 23 22 45 45 H 1.09000 * 109.47351 * 59.99947 * 26 23 22 46 46 H 1.09005 * 109.47382 * 179.97438 * 26 23 22 47 47 H 1.08998 * 109.47484 * 299.99789 * 26 23 22 48 48 H 1.09005 * 110.36987 * 142.96589 * 28 16 15 49 49 H 1.09000 * 110.37268 * 265.18387 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1635 1.2242 -0.3702 5 6 1.5406 2.3389 0.4758 6 7 0.4322 2.2549 1.1806 7 14 2.2941 4.0099 0.1160 8 1 1.7393 4.5396 -1.1557 9 1 1.9744 4.9461 1.2234 10 1 3.7678 3.8725 -0.0062 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 1 3.0021 -0.9449 -1.9921 14 6 3.1989 -3.0694 -1.4864 15 6 2.7699 -3.6560 -2.8478 16 7 1.5092 -3.0017 -3.2274 17 6 0.8167 -3.2288 -4.3610 18 8 -0.2213 -2.6317 -4.5691 19 6 1.3202 -4.2052 -5.3529 20 7 2.4457 -4.9305 -5.2641 21 7 2.5174 -5.6571 -6.3274 22 7 1.4974 -5.4104 -7.0727 23 6 1.2257 -6.0343 -8.3701 24 6 1.1638 -4.9545 -9.4524 25 6 2.3419 -7.0264 -8.7027 26 6 -0.1125 -6.7735 -8.3103 27 7 0.7528 -4.5282 -6.4997 28 6 1.1246 -2.0609 -2.1595 29 1 -0.3633 0.0928 1.0234 30 1 -0.3633 0.8398 -0.5922 31 1 -0.3632 -0.9328 -0.4313 32 1 0.0068 3.0606 1.5134 33 1 1.6085 -2.0286 0.5129 34 1 3.1500 -1.1385 0.5133 35 1 4.2778 -2.9183 -1.4543 36 1 2.8763 -3.7125 -0.6676 37 1 2.6166 -4.7313 -2.7564 38 1 3.5343 -3.4508 -3.5972 39 1 2.1171 -4.4279 -9.4950 40 1 0.9621 -5.4188 -10.4177 41 1 0.3686 -4.2478 -9.2155 42 1 2.3859 -7.7956 -7.9317 43 1 2.1400 -7.4903 -9.6681 44 1 3.2953 -6.4998 -8.7454 45 1 -0.9078 -6.0668 -8.0734 46 1 -0.3149 -7.2374 -9.2757 47 1 -0.0686 -7.5428 -7.5393 48 1 0.6757 -1.1644 -2.5872 49 1 0.4319 -2.5371 -1.4656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567730233.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:31 Heat of formation + Delta-G solvation = 101.298626 kcal Electronic energy + Delta-G solvation = -29560.614683 eV Core-core repulsion = 25561.253521 eV Total energy + Delta-G solvation = -3999.361161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.62762 -41.21666 -39.07042 -38.60980 -37.13412 -34.74884 -34.20188 -33.45052 -32.26931 -30.06783 -28.73931 -28.55514 -28.30028 -27.60217 -25.99809 -25.65645 -24.13459 -22.81507 -21.90422 -21.26236 -20.96508 -18.75010 -18.63368 -18.54232 -17.76635 -17.44347 -16.97596 -16.73061 -15.92937 -15.46516 -15.28925 -15.23527 -15.19493 -14.94615 -14.57963 -14.43348 -14.09728 -13.92951 -13.86693 -13.49253 -13.36697 -13.26846 -13.23563 -12.98285 -12.86086 -12.83520 -12.65647 -12.55856 -12.41941 -12.37679 -12.15819 -12.13571 -12.06896 -11.98707 -11.76424 -11.64391 -11.59574 -11.49758 -11.39143 -10.60039 -9.85676 -8.72965 -7.79000 -5.27873 -0.21008 0.22974 0.60366 1.46051 1.48673 1.51629 1.56178 1.79734 2.52640 2.64930 2.88858 3.33424 3.46788 3.47075 3.58425 3.63788 3.70921 3.83684 3.96192 4.09960 4.26453 4.32245 4.39745 4.50167 4.50966 4.57350 4.58989 4.66314 4.71091 4.72203 4.72301 4.85188 4.90155 4.95226 5.00802 5.03701 5.05603 5.09468 5.16283 5.18927 5.21946 5.27438 5.38881 5.52187 5.67673 5.73068 6.17536 6.37030 6.63359 7.01682 7.18596 7.91828 8.35585 9.23692 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002280 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.702962 B =12278.298800 C =12580.824124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.618 5.618 3 C -0.255 4.255 4 H 0.073 0.927 5 C -0.057 4.057 6 N -0.939 5.939 7 Si 0.963 3.037 8 H -0.293 1.293 9 H -0.296 1.296 10 H -0.265 1.265 11 C 0.161 3.839 12 C -0.108 4.108 13 H 0.066 0.934 14 C -0.113 4.113 15 C 0.107 3.893 16 N -0.593 5.593 17 C 0.620 3.380 18 O -0.555 6.555 19 C 0.118 3.882 20 N -0.257 5.257 21 N -0.056 5.056 22 N -0.109 5.109 23 C 0.159 3.841 24 C -0.158 4.158 25 C -0.149 4.149 26 C -0.158 4.158 27 N -0.260 5.260 28 C 0.126 3.874 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.031 0.969 32 H 0.246 0.754 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.130 0.870 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.130 0.870 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 -24.520 -21.619 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.341 5.341 3 C -0.385 4.385 4 H 0.091 0.909 5 C -0.252 4.252 6 N -0.586 5.586 7 Si 0.792 3.208 8 H -0.221 1.221 9 H -0.223 1.223 10 H -0.189 1.189 11 C 0.035 3.965 12 C -0.130 4.130 13 H 0.085 0.915 14 C -0.151 4.151 15 C -0.015 4.015 16 N -0.325 5.325 17 C 0.403 3.597 18 O -0.431 6.431 19 C -0.165 4.165 20 N -0.131 5.131 21 N -0.049 5.049 22 N -0.025 5.025 23 C 0.081 3.919 24 C -0.217 4.217 25 C -0.207 4.207 26 C -0.216 4.216 27 N -0.114 5.114 28 C 0.005 3.995 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.148 0.852 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.298 -24.536 -21.973 33.361 hybrid contribution -0.528 1.925 0.319 2.021 sum 4.770 -22.612 -21.655 31.670 Atomic orbital electron populations 1.20548 0.83292 0.95650 0.97446 1.44144 1.01833 1.01992 1.86110 1.19506 0.98635 0.86784 1.33586 0.90891 1.25772 0.98923 1.01818 0.98696 1.70227 1.22149 1.27453 1.38813 0.85318 0.78637 0.80301 0.76532 1.22056 1.22268 1.18899 1.20859 0.96376 0.86658 0.92597 1.22947 0.93955 0.97411 0.98646 0.91527 1.22715 1.01981 0.94622 0.95800 1.22349 0.83773 0.97704 0.97627 1.48386 1.25061 1.41536 1.17538 1.15930 0.83100 0.80637 0.80034 1.90832 1.24487 1.50586 1.77176 1.24874 0.93488 1.02897 0.95220 1.76191 1.16217 1.06246 1.14468 1.78794 1.09790 1.18079 0.98189 1.51329 1.10899 1.22515 1.17792 1.22237 1.00728 0.94977 0.73998 1.22318 1.03239 0.97600 0.98518 1.22176 0.95750 0.97463 1.05265 1.22310 0.92702 1.00292 1.06280 1.74966 1.21224 1.07336 1.07885 1.22331 0.98558 0.91143 0.87491 0.97624 0.97574 0.95027 0.94473 0.92538 0.92144 0.87647 0.88615 0.89451 0.90303 0.91985 0.85143 0.92105 0.90955 0.85426 0.91121 0.92076 0.85182 0.91785 0.93175 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.93 8.61 127.77 1.10 10.03 16 2 N -0.62 -30.63 2.84 -726.95 -2.06 -32.69 16 3 C -0.25 -13.96 9.64 84.03 0.81 -13.14 16 4 H 0.07 3.84 7.87 -2.91 -0.02 3.82 16 5 C -0.06 -3.27 5.07 84.86 0.43 -2.84 16 6 N -0.94 -57.06 10.81 21.65 0.23 -56.83 16 7 Si 0.96 46.20 29.58 68.60 2.03 48.23 16 8 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 9 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 10 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 11 C 0.16 6.03 5.17 86.38 0.45 6.48 16 12 C -0.11 -3.44 3.29 -9.40 -0.03 -3.47 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 14 C -0.11 -2.49 6.42 31.79 0.20 -2.29 16 15 C 0.11 2.57 5.54 86.73 0.48 3.05 16 16 N -0.59 -18.90 3.33 -815.00 -2.71 -21.61 16 17 C 0.62 22.13 7.87 86.83 0.68 22.81 16 18 O -0.56 -23.88 17.36 -3.84 -0.07 -23.95 16 19 C 0.12 3.65 7.97 137.15 1.09 4.75 16 20 N -0.26 -6.93 10.09 -52.36 -0.53 -7.46 16 21 N -0.06 -1.31 12.21 37.02 0.45 -0.85 16 22 N -0.11 -2.28 3.72 -152.26 -0.57 -2.85 16 23 C 0.16 1.72 1.30 3.60 0.00 1.72 16 24 C -0.16 -1.37 8.66 71.99 0.62 -0.74 16 25 C -0.15 -0.82 7.90 71.98 0.57 -0.25 16 26 C -0.16 -1.28 8.66 71.98 0.62 -0.65 16 27 N -0.26 -7.33 11.85 -52.31 -0.62 -7.95 16 28 C 0.13 4.40 4.95 86.86 0.43 4.83 16 29 H 0.01 0.31 7.32 -2.39 -0.02 0.29 16 30 H 0.01 0.31 7.40 -2.39 -0.02 0.29 16 31 H 0.03 1.37 6.19 -2.39 -0.01 1.36 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.06 1.93 8.03 -2.39 -0.02 1.91 16 34 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 35 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 1.82 8.04 -2.39 -0.02 1.80 16 37 H 0.09 1.90 7.78 -2.39 -0.02 1.88 16 38 H 0.08 1.86 7.65 -2.39 -0.02 1.84 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.13 0.06 8.14 -2.38 -0.02 0.04 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.05 2.10 8.04 -2.38 -0.02 2.08 16 49 H 0.07 2.53 7.21 -2.39 -0.02 2.51 16 Total: -1.00 -76.81 395.60 4.56 -72.25 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 0.93 Total: 3.44 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 7.47 Total: 30.27 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.80 Total: -130.25 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.07 Total: -23.95 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -76.81 4.56 -72.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567730233.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.548 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds