Wall clock time and date at job start Tue Mar 31 2020 20:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99868 * 2 1 4 4 H 1.08004 * 119.99925 * 202.73732 * 3 2 1 5 5 C 1.38814 * 119.99837 * 22.74808 * 3 2 1 6 6 N 1.31618 * 120.00030 * 13.36512 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 193.36601 * 5 3 2 8 8 H 1.48500 * 109.47342 * 59.99511 * 7 5 3 9 9 H 1.48503 * 109.47194 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47155 * 299.99895 * 7 5 3 11 11 C 1.46504 * 119.99881 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47428 * 90.00066 * 11 2 1 13 13 H 1.09001 * 110.88233 * 302.57226 * 12 11 2 14 14 C 1.55152 * 111.00343 * 178.65061 * 12 11 2 15 15 C 1.54329 * 102.94130 * 206.42248 * 14 12 11 16 16 N 1.47025 * 107.27173 * 22.19187 * 15 14 12 17 17 C 1.34774 * 125.65047 * 181.09993 * 16 15 14 18 18 O 1.21537 * 120.00053 * 179.97438 * 17 16 15 19 19 C 1.48004 * 119.99689 * 359.95295 * 17 16 15 20 20 N 1.34183 * 126.70057 * 359.68691 * 19 17 16 21 21 N 1.28988 * 107.25124 * 179.89167 * 20 19 17 22 22 N 1.28718 * 108.98958 * 0.38203 * 21 20 19 23 23 C 1.46496 * 125.32161 * 179.79483 * 22 21 20 24 24 C 1.52996 * 109.47022 * 239.95746 * 23 22 21 25 25 C 1.53007 * 109.47094 * 359.95602 * 23 22 21 26 26 C 1.53000 * 109.47166 * 119.95293 * 23 22 21 27 27 N 1.28873 * 109.35616 * 359.75626 * 22 21 20 28 28 C 1.47426 * 108.70239 * 1.05619 * 16 15 14 29 29 H 1.08999 * 109.47352 * 275.12474 * 1 2 3 30 30 H 1.09005 * 109.47083 * 155.12459 * 1 2 3 31 31 H 1.09006 * 109.47299 * 35.12545 * 1 2 3 32 32 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46457 * 209.99878 * 11 2 1 34 34 H 1.09000 * 109.46799 * 329.99488 * 11 2 1 35 35 H 1.08997 * 110.72126 * 324.77952 * 14 12 11 36 36 H 1.08993 * 110.72424 * 88.06135 * 14 12 11 37 37 H 1.09005 * 109.88077 * 262.77585 * 15 14 12 38 38 H 1.08998 * 109.88510 * 141.60656 * 15 14 12 39 39 H 1.08994 * 109.47442 * 60.00031 * 24 23 22 40 40 H 1.09004 * 109.47239 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47013 * 299.99528 * 24 23 22 42 42 H 1.09000 * 109.46981 * 59.99833 * 25 23 22 43 43 H 1.08994 * 109.46786 * 180.02562 * 25 23 22 44 44 H 1.08998 * 109.46860 * 300.00246 * 25 23 22 45 45 H 1.09000 * 109.47170 * 60.00288 * 26 23 22 46 46 H 1.09004 * 109.47256 * 179.97438 * 26 23 22 47 47 H 1.09000 * 109.47286 * 300.00399 * 26 23 22 48 48 H 1.08995 * 110.37232 * 217.03324 * 28 16 15 49 49 H 1.09004 * 110.45436 * 94.75698 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1667 1.2223 -0.3615 5 6 1.5365 2.3413 0.4649 6 7 0.4110 2.2620 1.1426 7 14 2.3087 4.0086 0.1285 8 1 2.4093 4.2208 -1.3379 9 1 1.4648 5.0746 0.7257 10 1 3.6658 4.0559 0.7296 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 1 1.5156 -1.8032 -1.9923 14 6 3.2573 -3.0357 -1.4853 15 6 3.9809 -2.9576 -2.8462 16 7 4.0445 -1.5387 -3.2261 17 6 4.5829 -1.0531 -4.3622 18 8 4.5797 0.1439 -4.5729 19 6 5.1785 -1.9774 -5.3528 20 7 5.2601 -3.3132 -5.2555 21 7 5.8438 -3.7396 -6.3238 22 7 6.1341 -2.7336 -7.0725 23 6 6.8081 -2.8106 -8.3709 24 6 8.1138 -2.0151 -8.3157 25 6 7.1154 -4.2729 -8.7001 26 6 5.8990 -2.2245 -9.4531 27 7 5.7383 -1.6481 -6.5017 28 6 3.4208 -0.7352 -2.1589 29 1 -0.3634 0.0918 1.0235 30 1 -0.3633 -0.9324 -0.4323 31 1 -0.3634 0.8406 -0.5913 32 1 -0.0177 3.0694 1.4672 33 1 3.1499 -1.1386 0.5133 34 1 1.6084 -2.0286 0.5130 35 1 3.9770 -3.0761 -0.6678 36 1 2.5873 -3.8947 -1.4536 37 1 3.4217 -3.5174 -3.5960 38 1 4.9888 -3.3621 -2.7539 39 1 8.7614 -2.4327 -7.5449 40 1 8.6151 -2.0720 -9.2819 41 1 7.8949 -0.9733 -8.0813 42 1 6.1851 -4.8397 -8.7394 43 1 7.6173 -4.3302 -9.6659 44 1 7.7629 -4.6905 -7.9291 45 1 5.6801 -1.1828 -9.2186 46 1 6.4007 -2.2814 -10.4191 47 1 4.9688 -2.7913 -9.4923 48 1 2.8690 0.1014 -2.5872 49 1 4.1776 -0.3732 -1.4630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567730234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:37 Heat of formation + Delta-G solvation = 123.950644 kcal Electronic energy + Delta-G solvation = -29694.369686 eV Core-core repulsion = 25695.990790 eV Total energy + Delta-G solvation = -3998.378896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.59017 -39.81700 -38.05881 -37.49558 -35.31699 -33.71983 -32.85754 -32.02904 -30.56083 -28.76869 -28.19765 -28.13005 -26.54561 -25.78162 -24.73061 -24.55979 -22.84836 -21.19745 -20.98567 -19.92681 -19.47766 -17.64332 -17.57994 -16.92643 -16.77371 -15.82934 -15.58152 -14.87431 -14.76572 -14.69798 -14.31151 -14.15210 -13.57994 -13.48594 -13.33150 -13.10140 -13.06123 -12.95088 -12.89896 -12.50925 -12.42740 -12.34314 -12.24735 -12.06981 -11.82061 -11.62429 -11.27815 -11.20735 -11.16084 -11.04574 -10.72243 -10.59468 -10.53059 -10.36993 -10.30585 -10.19678 -10.07310 -9.84147 -9.70370 -8.47851 -8.44023 -6.68033 -5.65639 -3.12262 0.87603 1.38668 1.43483 2.75927 3.15703 3.46752 3.51194 3.55739 3.64660 3.87737 3.93777 4.04542 4.36801 4.56844 4.79846 4.85732 4.86730 4.89432 4.98636 5.02241 5.06367 5.07605 5.13779 5.22882 5.33480 5.45005 5.50186 5.51375 5.59137 5.63930 5.77462 5.83046 5.89593 6.01318 6.06034 6.23445 6.24737 6.39207 6.52206 6.55672 6.70186 6.80913 6.95445 7.43452 7.54601 7.78634 7.87897 7.95003 8.18516 8.46217 9.30404 9.94049 10.42389 11.38930 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.002581 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.657231 B =10844.515151 C =11906.447129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.254 4.254 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.899 3.101 8 H -0.282 1.282 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.162 3.838 12 C -0.117 4.117 13 H 0.077 0.923 14 C -0.129 4.129 15 C 0.106 3.894 16 N -0.596 5.596 17 C 0.621 3.379 18 O -0.509 6.509 19 C 0.136 3.864 20 N -0.254 5.254 21 N -0.061 5.061 22 N -0.127 5.127 23 C 0.177 3.823 24 C -0.161 4.161 25 C -0.152 4.152 26 C -0.161 4.161 27 N -0.247 5.247 28 C 0.126 3.874 29 H 0.030 0.970 30 H -0.003 1.003 31 H 0.040 0.960 32 H 0.252 0.748 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.060 -16.336 -19.709 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.729 3.271 8 H -0.209 1.209 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.095 0.905 14 C -0.167 4.167 15 C -0.017 4.017 16 N -0.330 5.330 17 C 0.403 3.597 18 O -0.381 6.381 19 C -0.148 4.148 20 N -0.128 5.128 21 N -0.054 5.054 22 N -0.042 5.042 23 C 0.096 3.904 24 C -0.219 4.219 25 C -0.210 4.210 26 C -0.219 4.219 27 N -0.100 5.100 28 C 0.006 3.994 29 H 0.049 0.951 30 H 0.015 0.985 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.150 -16.022 -20.055 28.842 hybrid contribution 0.230 1.324 -0.072 1.346 sum 13.381 -14.698 -20.127 28.287 Atomic orbital electron populations 1.20787 0.82708 0.95327 0.99405 1.43904 1.01825 1.00643 1.86075 1.19148 0.98134 0.85471 1.35601 0.91271 1.24994 0.97879 0.98457 0.98196 1.70061 1.19507 1.27174 1.38527 0.86409 0.78435 0.83997 0.78223 1.20878 1.21735 1.20918 1.20662 0.96430 0.88659 0.90863 1.23217 0.97151 0.92477 1.01102 0.90484 1.22718 0.99330 0.98939 0.95757 1.22149 1.01197 0.81200 0.97132 1.48397 1.56628 1.09828 1.18161 1.15682 0.79130 0.85294 0.79620 1.90880 1.57332 1.13853 1.76050 1.25364 1.03576 0.91051 0.94782 1.76234 1.14441 1.08666 1.13489 1.78862 1.12310 1.16037 0.98154 1.50732 1.35497 1.00735 1.17198 1.21505 0.93147 1.00019 0.75720 1.22262 0.94006 1.01343 1.04293 1.22102 1.04072 0.91338 1.03529 1.22265 0.99483 1.02945 0.97229 1.75009 1.13944 1.12813 1.08247 1.22475 0.95364 0.94556 0.87030 0.95126 0.98463 0.94165 0.93798 0.93113 0.93872 0.90502 0.90237 0.90996 0.91053 0.91279 0.88964 0.90156 0.90488 0.89109 0.90501 0.90151 0.88966 0.91267 0.89236 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.98 59.85 0.54 4.51 16 2 N -0.60 -14.77 2.87 -181.11 -0.52 -15.29 16 3 C -0.25 -6.89 8.98 -15.06 -0.14 -7.02 16 4 H 0.07 1.84 6.72 -52.48 -0.35 1.48 16 5 C 0.00 0.09 5.09 -17.43 -0.09 0.00 16 6 N -0.91 -26.71 10.71 55.49 0.59 -26.12 16 7 Si 0.90 22.53 29.57 -169.99 -5.03 17.50 16 8 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.16 3.13 5.18 -4.04 -0.02 3.11 16 12 C -0.12 -1.95 3.29 -88.48 -0.29 -2.24 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.13 -1.64 6.42 -24.90 -0.16 -1.80 16 15 C 0.11 1.42 5.54 -3.06 -0.02 1.41 16 16 N -0.60 -9.99 3.33 -171.56 -0.57 -10.56 16 17 C 0.62 11.32 7.87 -12.26 -0.10 11.22 16 18 O -0.51 -11.00 17.35 5.33 0.09 -10.90 16 19 C 0.14 2.17 7.97 -156.25 -1.24 0.93 16 20 N -0.25 -3.64 10.09 32.10 0.32 -3.32 16 21 N -0.06 -0.76 12.21 60.35 0.74 -0.03 16 22 N -0.13 -1.44 3.72 0.52 0.00 -1.44 16 23 C 0.18 1.19 1.30 -131.82 -0.17 1.02 16 24 C -0.16 -0.89 8.66 37.16 0.32 -0.56 16 25 C -0.15 -0.68 7.90 37.16 0.29 -0.39 16 26 C -0.16 -0.90 8.66 37.16 0.32 -0.57 16 27 N -0.25 -3.60 11.85 32.11 0.38 -3.22 16 28 C 0.13 2.33 5.07 -2.53 -0.01 2.31 16 29 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 30 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 31 H 0.04 1.06 7.33 -51.93 -0.38 0.68 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.05 0.98 8.00 -51.93 -0.42 0.57 16 34 H 0.04 0.77 8.07 -51.93 -0.42 0.36 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.94 7.67 -51.93 -0.40 0.54 16 38 H 0.07 0.91 7.77 -51.93 -0.40 0.50 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 1.93 8.03 -51.93 -0.42 1.51 16 49 H 0.07 1.43 7.43 -51.93 -0.39 1.04 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -33.80 396.25 -6.95 -40.75 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -8.17 Total: -5.28 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -0.76 Total: 11.92 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.95 Total: -59.97 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.80 -6.95 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567730234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.700 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds