Wall clock time and date at job start Tue Mar 31 2020 20:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99868 * 2 1 4 4 H 1.08004 * 119.99925 * 202.73732 * 3 2 1 5 5 C 1.38814 * 119.99837 * 22.74808 * 3 2 1 6 6 N 1.31618 * 120.00030 * 13.36512 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 193.36601 * 5 3 2 8 8 H 1.48500 * 109.47342 * 59.99511 * 7 5 3 9 9 H 1.48503 * 109.47194 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47155 * 299.99895 * 7 5 3 11 11 C 1.46504 * 119.99881 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47428 * 90.00066 * 11 2 1 13 13 H 1.09001 * 110.88233 * 302.57226 * 12 11 2 14 14 C 1.55152 * 111.00343 * 178.65061 * 12 11 2 15 15 C 1.54329 * 102.94130 * 206.42248 * 14 12 11 16 16 N 1.47025 * 107.27173 * 22.19187 * 15 14 12 17 17 C 1.34774 * 125.65047 * 181.09993 * 16 15 14 18 18 O 1.21537 * 120.00053 * 179.97438 * 17 16 15 19 19 C 1.48004 * 119.99689 * 359.95295 * 17 16 15 20 20 N 1.34183 * 126.70057 * 359.68691 * 19 17 16 21 21 N 1.28988 * 107.25124 * 179.89167 * 20 19 17 22 22 N 1.28718 * 108.98958 * 0.38203 * 21 20 19 23 23 C 1.46496 * 125.32161 * 179.79483 * 22 21 20 24 24 C 1.52996 * 109.47022 * 239.95746 * 23 22 21 25 25 C 1.53007 * 109.47094 * 359.95602 * 23 22 21 26 26 C 1.53000 * 109.47166 * 119.95293 * 23 22 21 27 27 N 1.28873 * 109.35616 * 359.75626 * 22 21 20 28 28 C 1.47426 * 108.70239 * 1.05619 * 16 15 14 29 29 H 1.08999 * 109.47352 * 275.12474 * 1 2 3 30 30 H 1.09005 * 109.47083 * 155.12459 * 1 2 3 31 31 H 1.09006 * 109.47299 * 35.12545 * 1 2 3 32 32 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46457 * 209.99878 * 11 2 1 34 34 H 1.09000 * 109.46799 * 329.99488 * 11 2 1 35 35 H 1.08997 * 110.72126 * 324.77952 * 14 12 11 36 36 H 1.08993 * 110.72424 * 88.06135 * 14 12 11 37 37 H 1.09005 * 109.88077 * 262.77585 * 15 14 12 38 38 H 1.08998 * 109.88510 * 141.60656 * 15 14 12 39 39 H 1.08994 * 109.47442 * 60.00031 * 24 23 22 40 40 H 1.09004 * 109.47239 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47013 * 299.99528 * 24 23 22 42 42 H 1.09000 * 109.46981 * 59.99833 * 25 23 22 43 43 H 1.08994 * 109.46786 * 180.02562 * 25 23 22 44 44 H 1.08998 * 109.46860 * 300.00246 * 25 23 22 45 45 H 1.09000 * 109.47170 * 60.00288 * 26 23 22 46 46 H 1.09004 * 109.47256 * 179.97438 * 26 23 22 47 47 H 1.09000 * 109.47286 * 300.00399 * 26 23 22 48 48 H 1.08995 * 110.37232 * 217.03324 * 28 16 15 49 49 H 1.09004 * 110.45436 * 94.75698 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1667 1.2223 -0.3615 5 6 1.5365 2.3413 0.4649 6 7 0.4110 2.2620 1.1426 7 14 2.3087 4.0086 0.1285 8 1 2.4093 4.2208 -1.3379 9 1 1.4648 5.0746 0.7257 10 1 3.6658 4.0559 0.7296 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 1 1.5156 -1.8032 -1.9923 14 6 3.2573 -3.0357 -1.4853 15 6 3.9809 -2.9576 -2.8462 16 7 4.0445 -1.5387 -3.2261 17 6 4.5829 -1.0531 -4.3622 18 8 4.5797 0.1439 -4.5729 19 6 5.1785 -1.9774 -5.3528 20 7 5.2601 -3.3132 -5.2555 21 7 5.8438 -3.7396 -6.3238 22 7 6.1341 -2.7336 -7.0725 23 6 6.8081 -2.8106 -8.3709 24 6 8.1138 -2.0151 -8.3157 25 6 7.1154 -4.2729 -8.7001 26 6 5.8990 -2.2245 -9.4531 27 7 5.7383 -1.6481 -6.5017 28 6 3.4208 -0.7352 -2.1589 29 1 -0.3634 0.0918 1.0235 30 1 -0.3633 -0.9324 -0.4323 31 1 -0.3634 0.8406 -0.5913 32 1 -0.0177 3.0694 1.4672 33 1 3.1499 -1.1386 0.5133 34 1 1.6084 -2.0286 0.5130 35 1 3.9770 -3.0761 -0.6678 36 1 2.5873 -3.8947 -1.4536 37 1 3.4217 -3.5174 -3.5960 38 1 4.9888 -3.3621 -2.7539 39 1 8.7614 -2.4327 -7.5449 40 1 8.6151 -2.0720 -9.2819 41 1 7.8949 -0.9733 -8.0813 42 1 6.1851 -4.8397 -8.7394 43 1 7.6173 -4.3302 -9.6659 44 1 7.7629 -4.6905 -7.9291 45 1 5.6801 -1.1828 -9.2186 46 1 6.4007 -2.2814 -10.4191 47 1 4.9688 -2.7913 -9.4923 48 1 2.8690 0.1014 -2.5872 49 1 4.1776 -0.3732 -1.4630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567730234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:36 Heat of formation + Delta-G solvation = 101.753959 kcal Electronic energy + Delta-G solvation = -29695.332207 eV Core-core repulsion = 25695.990790 eV Total energy + Delta-G solvation = -3999.341417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.62949 -41.19609 -39.05435 -38.61189 -37.12789 -34.74822 -34.18736 -33.45450 -32.24395 -30.13588 -28.70495 -28.56113 -27.93366 -27.84238 -25.97166 -25.65555 -24.20560 -22.83240 -21.89865 -21.17984 -20.87836 -18.78614 -18.72153 -18.57876 -17.76695 -17.30650 -16.97583 -16.71379 -15.90514 -15.36602 -15.28527 -15.24228 -15.12554 -15.03041 -14.65057 -14.41221 -14.10668 -13.94210 -13.85798 -13.49511 -13.32646 -13.24601 -13.13245 -13.05002 -12.86560 -12.84542 -12.65889 -12.61373 -12.43094 -12.26024 -12.15069 -12.13798 -12.11232 -11.90798 -11.87215 -11.63166 -11.54305 -11.49636 -11.40380 -10.58613 -9.83982 -8.71372 -7.79225 -5.25998 -0.20994 0.23031 0.60363 1.43504 1.46967 1.52726 1.53198 1.80278 2.51720 2.65776 2.88838 3.33669 3.46618 3.47129 3.58128 3.63615 3.73136 3.86385 3.98761 4.11307 4.26435 4.35634 4.39477 4.50303 4.51280 4.57699 4.58434 4.71779 4.71908 4.73009 4.76016 4.87418 4.92015 4.97275 5.00396 5.02722 5.08613 5.08891 5.16034 5.21702 5.22157 5.26225 5.42209 5.54236 5.68995 5.77632 6.20114 6.37497 6.65025 7.01647 7.20352 7.93630 8.35523 9.23249 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.002581 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.657231 B =10844.515151 C =11906.447129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.619 5.619 3 C -0.247 4.247 4 H 0.069 0.931 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.952 3.048 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.275 1.275 11 C 0.161 3.839 12 C -0.106 4.106 13 H 0.072 0.928 14 C -0.112 4.112 15 C 0.106 3.894 16 N -0.593 5.593 17 C 0.618 3.382 18 O -0.557 6.557 19 C 0.120 3.880 20 N -0.256 5.256 21 N -0.056 5.056 22 N -0.109 5.109 23 C 0.159 3.841 24 C -0.158 4.158 25 C -0.148 4.148 26 C -0.158 4.158 27 N -0.261 5.261 28 C 0.130 3.870 29 H 0.006 0.994 30 H 0.034 0.966 31 H 0.008 0.992 32 H 0.246 0.754 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.130 0.870 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.130 0.870 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.782 -19.314 -21.454 32.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.342 5.342 3 C -0.378 4.378 4 H 0.087 0.913 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.781 3.219 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.201 1.201 11 C 0.034 3.966 12 C -0.128 4.128 13 H 0.091 0.909 14 C -0.150 4.150 15 C -0.016 4.016 16 N -0.326 5.326 17 C 0.401 3.599 18 O -0.433 6.433 19 C -0.164 4.164 20 N -0.130 5.130 21 N -0.048 5.048 22 N -0.026 5.026 23 C 0.081 3.919 24 C -0.216 4.216 25 C -0.206 4.206 26 C -0.217 4.217 27 N -0.115 5.115 28 C 0.009 3.991 29 H 0.025 0.975 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.149 0.851 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.901 -19.080 -21.801 32.579 hybrid contribution -0.207 2.134 0.311 2.167 sum 14.694 -16.945 -21.490 31.063 Atomic orbital electron populations 1.20536 0.82980 0.95821 0.97617 1.44154 1.02069 1.01829 1.86122 1.19410 0.98068 0.86704 1.33614 0.91281 1.25625 0.98766 1.01236 0.99145 1.70196 1.20774 1.27241 1.40199 0.85569 0.77998 0.80925 0.77393 1.21620 1.21859 1.20052 1.20870 0.96178 0.86901 0.92620 1.22954 0.97018 0.94196 0.98614 0.90944 1.22723 0.99328 0.97373 0.95621 1.22369 1.02348 0.79041 0.97796 1.48439 1.55618 1.11146 1.17361 1.15978 0.78723 0.85104 0.80130 1.90839 1.59319 1.15920 1.77217 1.24853 1.05105 0.91345 0.95062 1.76182 1.14868 1.07662 1.14328 1.78785 1.12030 1.16089 0.97883 1.51326 1.33888 0.99546 1.17790 1.22239 0.93579 1.02163 0.73969 1.22312 0.93349 0.99685 1.06279 1.22177 1.04062 0.89095 1.05278 1.22316 0.99509 1.01330 0.98506 1.74973 1.14142 1.14261 1.08133 1.22254 0.95248 0.94385 0.87260 0.97528 0.94760 0.97318 0.94468 0.93068 0.91524 0.89018 0.87044 0.90043 0.89713 0.91820 0.85148 0.92168 0.91025 0.85419 0.90985 0.92183 0.85140 0.91880 0.93276 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.65 8.98 127.77 1.15 9.80 16 2 N -0.62 -30.38 2.87 -726.91 -2.09 -32.46 16 3 C -0.25 -13.64 8.98 84.03 0.75 -12.88 16 4 H 0.07 3.74 6.72 -2.91 -0.02 3.72 16 5 C -0.05 -3.05 5.09 84.86 0.43 -2.62 16 6 N -0.94 -56.61 10.71 21.65 0.23 -56.38 16 7 Si 0.95 47.58 29.57 68.60 2.03 49.60 16 8 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 9 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 10 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 11 C 0.16 5.94 5.18 86.38 0.45 6.39 16 12 C -0.11 -3.35 3.29 -9.40 -0.03 -3.38 16 13 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.11 -2.45 6.42 31.78 0.20 -2.25 16 15 C 0.11 2.60 5.54 86.73 0.48 3.08 16 16 N -0.59 -19.82 3.33 -814.99 -2.71 -22.53 16 17 C 0.62 23.10 7.87 86.83 0.68 23.79 16 18 O -0.56 -25.33 17.35 -3.83 -0.07 -25.39 16 19 C 0.12 3.81 7.97 137.15 1.09 4.91 16 20 N -0.26 -7.06 10.09 -52.37 -0.53 -7.59 16 21 N -0.06 -1.32 12.21 37.02 0.45 -0.86 16 22 N -0.11 -2.36 3.72 -152.26 -0.57 -2.92 16 23 C 0.16 1.80 1.30 3.61 0.00 1.81 16 24 C -0.16 -1.40 8.66 71.98 0.62 -0.78 16 25 C -0.15 -0.86 7.90 71.98 0.57 -0.29 16 26 C -0.16 -1.43 8.66 71.98 0.62 -0.81 16 27 N -0.26 -7.62 11.85 -52.32 -0.62 -8.24 16 28 C 0.13 4.86 5.07 86.85 0.44 5.30 16 29 H 0.01 0.35 7.34 -2.39 -0.02 0.33 16 30 H 0.03 1.40 8.03 -2.38 -0.02 1.38 16 31 H 0.01 0.44 7.33 -2.38 -0.02 0.42 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 33 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 34 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 35 H 0.09 1.81 8.04 -2.39 -0.02 1.79 16 36 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.90 7.67 -2.38 -0.02 1.88 16 38 H 0.08 1.92 7.77 -2.39 -0.02 1.90 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.13 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.13 0.17 8.14 -2.38 -0.02 0.15 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.05 2.22 8.03 -2.39 -0.02 2.21 16 49 H 0.06 2.52 7.43 -2.38 -0.02 2.50 16 Total: -1.00 -77.41 396.25 4.54 -72.87 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 0.93 Total: 1.85 kcal Atomic # 6 Polarization: 24.58 SS G_CDS: 7.47 Total: 32.05 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -5.83 Total: -130.99 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.07 Total: -25.39 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Total: -77.41 4.54 -72.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567730234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.627 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds