Wall clock time and date at job start Tue Mar 31 2020 20:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47333 * 240.00216 * 2 1 3 5 5 N 1.46497 * 109.47464 * 120.00364 * 2 1 3 6 6 N 1.28716 * 125.32159 * 240.04347 * 5 2 1 7 7 N 1.28981 * 108.98817 * 179.71920 * 6 5 2 8 8 C 1.34188 * 107.25503 * 0.37689 * 7 6 5 9 9 C 1.48003 * 126.70174 * 179.89173 * 8 7 6 10 10 O 1.21539 * 119.99764 * 179.68682 * 9 8 7 11 11 N 1.34776 * 119.99684 * 359.68427 * 9 8 7 12 12 C 1.46508 * 119.99573 * 174.90410 * 11 9 8 13 13 C 1.52998 * 110.01736 * 65.17568 * 12 11 9 14 14 N 1.46499 * 109.47142 * 55.16650 * 13 12 11 15 15 C 1.36936 * 120.00315 * 174.90797 * 14 13 12 16 16 H 1.07999 * 119.99931 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00108 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00334 * 359.71903 * 17 15 14 19 19 Si 1.86805 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47313 * 119.99414 * 19 17 15 22 22 H 1.48501 * 109.47119 * 239.99814 * 19 17 15 23 23 C 1.54257 * 110.07216 * 186.59419 * 12 11 9 24 24 C 1.54886 * 104.19795 * 95.69526 * 23 12 11 25 25 C 1.54893 * 102.74625 * 37.94520 * 24 23 12 26 26 C 1.53874 * 110.03210 * 303.78295 * 12 11 9 27 27 N 1.28875 * 125.31971 * 59.99701 * 5 2 1 28 28 H 1.08998 * 109.47336 * 299.99468 * 1 2 3 29 29 H 1.09002 * 109.47488 * 59.99951 * 1 2 3 30 30 H 1.09005 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.46983 * 300.00470 * 3 2 1 33 33 H 1.08998 * 109.46568 * 60.00061 * 3 2 1 34 34 H 1.08996 * 109.47041 * 300.00347 * 4 2 1 35 35 H 1.09004 * 109.46505 * 59.99767 * 4 2 1 36 36 H 1.08992 * 109.47277 * 179.97438 * 4 2 1 37 37 H 0.96993 * 120.00337 * 354.90947 * 11 9 8 38 38 H 1.09006 * 109.46861 * 295.16999 * 13 12 11 39 39 H 1.08994 * 109.47519 * 175.16653 * 13 12 11 40 40 H 0.97008 * 119.99917 * 354.90664 * 14 13 12 41 41 H 0.97000 * 120.00280 * 180.02562 * 18 17 15 42 42 H 1.08998 * 110.48720 * 214.37628 * 23 12 11 43 43 H 1.09010 * 110.48694 * 337.02031 * 23 12 11 44 44 H 1.08999 * 110.76039 * 279.62578 * 24 23 12 45 45 H 1.09003 * 110.76040 * 156.25627 * 24 23 12 46 46 H 1.08998 * 110.48461 * 203.37816 * 25 24 23 47 47 H 1.08995 * 110.48774 * 80.73388 * 25 24 23 48 48 H 1.09000 * 110.03407 * 359.95562 * 26 12 11 49 49 H 1.09005 * 110.02989 * 121.38262 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.7609 -0.1661 2.1073 7 7 2.9979 -1.0502 3.0160 8 6 2.3771 -2.1801 2.6435 9 6 2.3686 -3.4670 3.3745 10 8 1.7577 -4.4169 2.9256 11 7 3.0385 -3.5854 4.5380 12 6 2.9394 -4.8219 5.3176 13 6 3.5614 -5.9830 4.5393 14 7 4.9388 -5.6435 4.1736 15 6 5.7335 -6.5745 3.5597 16 1 5.3450 -7.5591 3.3455 17 6 7.0388 -6.2530 3.2138 18 7 7.5109 -5.0516 3.4708 19 14 8.1232 -7.5232 2.3770 20 1 7.3597 -8.7841 2.1966 21 1 8.5534 -7.0107 1.0513 22 1 9.3186 -7.7849 3.2183 23 6 3.6548 -4.6515 6.6737 24 6 2.5212 -4.2624 7.6549 25 6 1.3361 -5.1346 7.1711 26 6 1.4652 -5.1290 5.6339 27 7 1.7710 -1.9182 1.5008 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 3.5860 -2.8520 4.8593 38 1 2.9804 -6.1670 3.6355 39 1 3.5606 -6.8786 5.1604 40 1 5.2879 -4.7592 4.3664 41 1 8.4229 -4.8268 3.2287 42 1 4.1197 -5.5885 6.9801 43 1 4.3985 -3.8566 6.6155 44 1 2.2818 -3.2026 7.5679 45 1 2.7936 -4.5150 8.6796 46 1 0.3877 -4.6923 7.4759 47 1 1.4266 -6.1496 7.5578 48 1 0.8234 -4.3577 5.2081 49 1 1.1928 -6.1052 5.2328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568000198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:41 Heat of formation + Delta-G solvation = 98.500301 kcal Electronic energy + Delta-G solvation = -30389.609629 eV Core-core repulsion = 26390.127123 eV Total energy + Delta-G solvation = -3999.482506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.34840 -40.05683 -37.96294 -37.38838 -34.26732 -33.63512 -33.14045 -32.30790 -30.91179 -28.61624 -28.21260 -27.96009 -27.90436 -25.20863 -24.46371 -24.29230 -22.15477 -21.16182 -20.78536 -20.50763 -18.89425 -17.86884 -17.34654 -17.02231 -16.80564 -15.94125 -15.04532 -14.74973 -14.71545 -14.50227 -14.36518 -14.20597 -13.91986 -13.73029 -13.27803 -13.14105 -12.97918 -12.87228 -12.77782 -12.65361 -12.25621 -12.20701 -11.90846 -11.88294 -11.58076 -11.51871 -11.14305 -10.99862 -10.93330 -10.92086 -10.84802 -10.79642 -10.66390 -10.45399 -10.37379 -10.25822 -9.96389 -9.81213 -9.61534 -8.77460 -8.61129 -6.79289 -5.67731 -2.94483 1.11749 1.63619 1.65723 3.06493 3.44546 3.48412 3.54248 3.56452 3.84945 4.11763 4.18936 4.23757 4.61285 4.64776 4.78591 4.87928 4.99743 5.00849 5.06197 5.10978 5.17872 5.24147 5.25823 5.38714 5.52812 5.56869 5.62047 5.64719 5.69327 5.70980 5.72157 5.84100 5.84633 5.92532 6.01692 6.07725 6.11703 6.25941 6.32155 6.39192 6.54321 6.57075 6.62161 6.91811 7.10610 7.74588 7.80162 8.26428 8.45660 8.51213 9.62696 10.21187 10.56869 11.55341 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008928 B = 0.003958 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.319705 B = 7072.228303 C = 9252.149304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 C -0.153 4.153 4 C -0.162 4.162 5 N -0.129 5.129 6 N -0.059 5.059 7 N -0.254 5.254 8 C 0.135 3.865 9 C 0.621 3.379 10 O -0.503 6.503 11 N -0.686 5.686 12 C 0.170 3.830 13 C 0.144 3.856 14 N -0.727 5.727 15 C -0.231 4.231 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.294 1.294 22 H -0.292 1.292 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.119 4.119 27 N -0.248 5.248 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.407 0.593 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.382 0.618 41 H 0.252 0.748 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 13.457 -1.705 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.097 3.903 3 C -0.211 4.211 4 C -0.220 4.220 5 N -0.044 5.044 6 N -0.052 5.052 7 N -0.129 5.129 8 C -0.149 4.149 9 C 0.401 3.599 10 O -0.374 6.374 11 N -0.338 5.338 12 C 0.085 3.915 13 C 0.016 3.984 14 N -0.371 5.371 15 C -0.362 4.362 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.735 3.265 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.220 1.220 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.158 4.158 27 N -0.101 5.101 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.216 0.784 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.553 13.181 -2.233 21.278 hybrid contribution 1.133 -0.421 -0.383 1.267 sum -15.421 12.760 -2.616 20.186 Atomic orbital electron populations 1.22246 0.90765 1.04760 1.03979 1.21461 0.96206 0.93057 0.79603 1.22100 1.03392 0.91358 1.04225 1.22270 1.02785 1.02170 0.94798 1.50686 1.29989 1.05528 1.18159 1.78838 1.08589 1.22263 0.95528 1.76132 1.19035 0.98295 1.19406 1.25496 0.99012 0.97258 0.93155 1.15983 0.80415 0.82950 0.80599 1.90815 1.43626 1.36710 1.66243 1.45760 1.48365 1.18577 1.21078 1.21383 0.95165 0.84106 0.90841 1.21185 0.87387 0.93058 0.96794 1.42237 1.07886 1.15011 1.71989 1.19279 0.92943 0.94001 1.29984 0.91252 1.24688 0.97398 0.96775 1.02273 1.69664 1.16013 1.19103 1.53568 0.86150 0.80690 0.80702 0.78912 1.20599 1.22095 1.21970 1.22592 0.97216 1.03399 0.92268 1.22549 0.95410 0.99567 0.98822 1.22379 0.98152 1.00114 0.95480 1.22441 0.95090 1.02817 0.95435 1.74973 1.21401 0.98612 1.15079 0.91383 0.89092 0.90212 0.90399 0.89219 0.90567 0.90134 0.89103 0.91108 0.75709 0.94415 0.95195 0.78392 0.93769 0.89289 0.90672 0.91693 0.91523 0.92015 0.91455 0.91508 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.66 37.15 0.32 -0.78 16 2 C 0.18 1.58 1.30 -131.82 -0.17 1.40 16 3 C -0.15 -1.01 7.90 37.16 0.29 -0.71 16 4 C -0.16 -1.31 8.66 37.16 0.32 -0.99 16 5 N -0.13 -1.78 3.72 0.52 0.00 -1.78 16 6 N -0.06 -0.91 12.21 60.35 0.74 -0.17 16 7 N -0.25 -4.39 12.27 32.10 0.39 -4.00 16 8 C 0.14 2.46 8.14 -156.24 -1.27 1.19 16 9 C 0.62 12.00 6.88 -12.26 -0.08 11.91 16 10 O -0.50 -10.85 14.37 5.33 0.08 -10.78 16 11 N -0.69 -12.03 4.50 -47.45 -0.21 -12.24 16 12 C 0.17 2.91 0.57 -130.70 -0.07 2.84 16 13 C 0.14 3.11 4.64 -4.04 -0.02 3.10 16 14 N -0.73 -18.92 5.27 -59.91 -0.32 -19.23 16 15 C -0.23 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 18 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 19 Si 0.90 23.23 29.55 -169.99 -5.02 18.20 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 C -0.12 -1.76 5.74 -25.08 -0.14 -1.91 16 24 C -0.13 -1.50 6.91 -24.74 -0.17 -1.68 16 25 C -0.12 -1.48 6.83 -25.07 -0.17 -1.65 16 26 C -0.12 -1.78 5.22 -25.62 -0.13 -1.91 16 27 N -0.25 -4.15 11.85 32.11 0.38 -3.77 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 6.69 7.99 -40.82 -0.33 6.36 16 38 H 0.04 0.91 6.55 -51.93 -0.34 0.57 16 39 H 0.03 0.64 8.04 -51.93 -0.42 0.22 16 40 H 0.38 10.30 7.19 -40.82 -0.29 10.01 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 42 H 0.09 1.43 7.79 -51.93 -0.40 1.03 16 43 H 0.07 1.15 7.70 -51.92 -0.40 0.75 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 1.04 6.99 -51.93 -0.36 0.67 16 49 H 0.08 1.17 7.67 -51.93 -0.40 0.78 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -35.29 396.95 -6.79 -42.08 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.98 Total: 10.45 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.55 Total: 3.40 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: 1.71 Total: -69.34 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.29 -6.79 -42.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568000198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.576 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds