Wall clock time and date at job start Tue Mar 31 2020 20:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47333 * 240.00216 * 2 1 3 5 5 N 1.46497 * 109.47464 * 120.00364 * 2 1 3 6 6 N 1.28716 * 125.32159 * 240.04347 * 5 2 1 7 7 N 1.28981 * 108.98817 * 179.71920 * 6 5 2 8 8 C 1.34188 * 107.25503 * 0.37689 * 7 6 5 9 9 C 1.48003 * 126.70174 * 179.89173 * 8 7 6 10 10 O 1.21539 * 119.99764 * 179.68682 * 9 8 7 11 11 N 1.34776 * 119.99684 * 359.68427 * 9 8 7 12 12 C 1.46508 * 119.99573 * 174.90410 * 11 9 8 13 13 C 1.52998 * 110.01736 * 65.17568 * 12 11 9 14 14 N 1.46499 * 109.47142 * 55.16650 * 13 12 11 15 15 C 1.36936 * 120.00315 * 174.90797 * 14 13 12 16 16 H 1.07999 * 119.99931 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00108 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00334 * 359.71903 * 17 15 14 19 19 Si 1.86805 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47313 * 119.99414 * 19 17 15 22 22 H 1.48501 * 109.47119 * 239.99814 * 19 17 15 23 23 C 1.54257 * 110.07216 * 186.59419 * 12 11 9 24 24 C 1.54886 * 104.19795 * 95.69526 * 23 12 11 25 25 C 1.54893 * 102.74625 * 37.94520 * 24 23 12 26 26 C 1.53874 * 110.03210 * 303.78295 * 12 11 9 27 27 N 1.28875 * 125.31971 * 59.99701 * 5 2 1 28 28 H 1.08998 * 109.47336 * 299.99468 * 1 2 3 29 29 H 1.09002 * 109.47488 * 59.99951 * 1 2 3 30 30 H 1.09005 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.46983 * 300.00470 * 3 2 1 33 33 H 1.08998 * 109.46568 * 60.00061 * 3 2 1 34 34 H 1.08996 * 109.47041 * 300.00347 * 4 2 1 35 35 H 1.09004 * 109.46505 * 59.99767 * 4 2 1 36 36 H 1.08992 * 109.47277 * 179.97438 * 4 2 1 37 37 H 0.96993 * 120.00337 * 354.90947 * 11 9 8 38 38 H 1.09006 * 109.46861 * 295.16999 * 13 12 11 39 39 H 1.08994 * 109.47519 * 175.16653 * 13 12 11 40 40 H 0.97008 * 119.99917 * 354.90664 * 14 13 12 41 41 H 0.97000 * 120.00280 * 180.02562 * 18 17 15 42 42 H 1.08998 * 110.48720 * 214.37628 * 23 12 11 43 43 H 1.09010 * 110.48694 * 337.02031 * 23 12 11 44 44 H 1.08999 * 110.76039 * 279.62578 * 24 23 12 45 45 H 1.09003 * 110.76040 * 156.25627 * 24 23 12 46 46 H 1.08998 * 110.48461 * 203.37816 * 25 24 23 47 47 H 1.08995 * 110.48774 * 80.73388 * 25 24 23 48 48 H 1.09000 * 110.03407 * 359.95562 * 26 12 11 49 49 H 1.09005 * 110.02989 * 121.38262 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.7609 -0.1661 2.1073 7 7 2.9979 -1.0502 3.0160 8 6 2.3771 -2.1801 2.6435 9 6 2.3686 -3.4670 3.3745 10 8 1.7577 -4.4169 2.9256 11 7 3.0385 -3.5854 4.5380 12 6 2.9394 -4.8219 5.3176 13 6 3.5614 -5.9830 4.5393 14 7 4.9388 -5.6435 4.1736 15 6 5.7335 -6.5745 3.5597 16 1 5.3450 -7.5591 3.3455 17 6 7.0388 -6.2530 3.2138 18 7 7.5109 -5.0516 3.4708 19 14 8.1232 -7.5232 2.3770 20 1 7.3597 -8.7841 2.1966 21 1 8.5534 -7.0107 1.0513 22 1 9.3186 -7.7849 3.2183 23 6 3.6548 -4.6515 6.6737 24 6 2.5212 -4.2624 7.6549 25 6 1.3361 -5.1346 7.1711 26 6 1.4652 -5.1290 5.6339 27 7 1.7710 -1.9182 1.5008 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 3.5860 -2.8520 4.8593 38 1 2.9804 -6.1670 3.6355 39 1 3.5606 -6.8786 5.1604 40 1 5.2879 -4.7592 4.3664 41 1 8.4229 -4.8268 3.2287 42 1 4.1197 -5.5885 6.9801 43 1 4.3985 -3.8566 6.6155 44 1 2.2818 -3.2026 7.5679 45 1 2.7936 -4.5150 8.6796 46 1 0.3877 -4.6923 7.4759 47 1 1.4266 -6.1496 7.5578 48 1 0.8234 -4.3577 5.2081 49 1 1.1928 -6.1052 5.2328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568000198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:40 Heat of formation + Delta-G solvation = 73.234365 kcal Electronic energy + Delta-G solvation = -30390.705242 eV Core-core repulsion = 26390.127123 eV Total energy + Delta-G solvation = -4000.578119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.58960 -41.50347 -39.03890 -38.53745 -36.17951 -34.95545 -34.53052 -33.57634 -32.88714 -29.90330 -29.62470 -28.60758 -28.55801 -26.72833 -25.96100 -25.60195 -24.01918 -22.51773 -21.81358 -21.60897 -20.37006 -19.16173 -19.09607 -18.54186 -17.75931 -17.41426 -16.59720 -16.27006 -16.01666 -15.80145 -15.45217 -15.27515 -15.15162 -15.10219 -15.01466 -14.57003 -14.11174 -14.02964 -13.61420 -13.49580 -13.29288 -13.24217 -13.23727 -12.87485 -12.85865 -12.74257 -12.64255 -12.37615 -12.29657 -12.16120 -12.13281 -12.10166 -11.99035 -11.89964 -11.81107 -11.74881 -11.46031 -11.39452 -11.33738 -10.90070 -10.12889 -8.97059 -7.95521 -5.22769 -0.14913 0.27543 0.66157 1.43345 1.44339 1.54563 1.71479 1.96936 2.53977 2.81671 2.95049 3.37237 3.46687 3.48904 3.56586 3.63471 3.70051 3.90033 4.01617 4.17855 4.29028 4.38850 4.40466 4.50072 4.51013 4.55149 4.57673 4.59758 4.68015 4.70474 4.71082 4.78469 4.84951 4.93395 4.99668 5.08229 5.08683 5.11200 5.17520 5.20039 5.20435 5.26742 5.34225 5.46808 5.51817 5.57518 6.25572 6.30409 6.90556 7.06015 7.33472 8.08182 8.35096 9.27747 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008928 B = 0.003958 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.319705 B = 7072.228303 C = 9252.149304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.110 5.110 6 N -0.059 5.059 7 N -0.268 5.268 8 C 0.114 3.886 9 C 0.618 3.382 10 O -0.534 6.534 11 N -0.678 5.678 12 C 0.171 3.829 13 C 0.146 3.854 14 N -0.733 5.733 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.072 4.072 18 N -0.965 5.965 19 Si 0.969 3.031 20 H -0.269 1.269 21 H -0.297 1.297 22 H -0.288 1.288 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.114 4.114 27 N -0.259 5.259 28 H 0.065 0.935 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.133 0.867 36 H 0.054 0.946 37 H 0.412 0.588 38 H 0.012 0.988 39 H 0.036 0.964 40 H 0.376 0.624 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.365 14.555 -1.803 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.079 3.921 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.027 5.027 6 N -0.051 5.051 7 N -0.142 5.142 8 C -0.170 4.170 9 C 0.398 3.602 10 O -0.408 6.408 11 N -0.329 5.329 12 C 0.086 3.914 13 C 0.018 3.982 14 N -0.376 5.376 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.264 4.264 18 N -0.616 5.616 19 Si 0.799 3.201 20 H -0.194 1.194 21 H -0.224 1.224 22 H -0.214 1.214 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.152 4.152 26 C -0.153 4.153 27 N -0.113 5.113 28 H 0.084 0.916 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.073 0.927 37 H 0.249 0.751 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.667 14.287 -2.304 22.837 hybrid contribution 1.415 -0.704 -0.492 1.655 sum -16.252 13.583 -2.796 21.364 Atomic orbital electron populations 1.22292 0.88840 1.04221 1.05895 1.22252 0.97769 0.94039 0.78032 1.22178 1.02624 0.89731 1.06126 1.22327 1.01803 1.01587 0.96089 1.51333 1.28260 1.04622 1.18505 1.78748 1.08844 1.21853 0.95679 1.76086 1.19552 0.98224 1.20382 1.25314 1.00440 0.97268 0.93985 1.16201 0.80057 0.83120 0.80814 1.90784 1.45076 1.37857 1.67093 1.45772 1.47750 1.18746 1.20679 1.21430 0.96722 0.82296 0.90957 1.21246 0.85172 0.95447 0.96301 1.42337 1.09226 1.14248 1.71748 1.19623 0.93594 0.94474 1.29756 0.91344 1.25474 0.98739 0.98775 1.03422 1.69812 1.16150 1.20843 1.54815 0.85128 0.78833 0.78725 0.77435 1.19390 1.22397 1.21435 1.22562 0.98149 1.02768 0.91814 1.22516 0.93628 1.00104 0.98897 1.22371 0.99258 1.01051 0.92566 1.22386 0.92960 1.01939 0.98031 1.74928 1.21591 1.00081 1.14731 0.91574 0.85021 0.91964 0.91655 0.85171 0.90779 0.92134 0.84822 0.92653 0.75146 0.97054 0.94610 0.79195 0.94096 0.90349 0.91248 0.90767 0.89284 0.89824 0.90439 0.92175 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.66 71.98 0.62 -1.19 16 2 C 0.16 2.57 1.30 3.61 0.00 2.57 16 3 C -0.15 -1.62 7.90 71.98 0.57 -1.05 16 4 C -0.16 -2.38 8.66 71.98 0.62 -1.75 16 5 N -0.11 -3.04 3.72 -152.26 -0.57 -3.61 16 6 N -0.06 -1.82 12.21 37.02 0.45 -1.37 16 7 N -0.27 -9.52 12.27 -52.37 -0.64 -10.17 16 8 C 0.11 4.30 8.14 137.15 1.12 5.41 16 9 C 0.62 24.92 6.88 86.83 0.60 25.52 16 10 O -0.53 -24.21 14.37 -3.84 -0.06 -24.27 16 11 N -0.68 -24.59 4.50 -422.33 -1.90 -26.49 16 12 C 0.17 5.96 0.57 4.32 0.00 5.96 16 13 C 0.15 6.52 4.64 86.38 0.40 6.92 16 14 N -0.73 -39.27 5.27 -343.46 -1.81 -41.08 16 15 C -0.24 -14.35 9.99 84.03 0.84 -13.51 16 16 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 17 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 18 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 19 Si 0.97 48.25 29.55 68.60 2.03 50.27 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 23 C -0.11 -3.41 5.74 31.66 0.18 -3.23 16 24 C -0.11 -2.46 6.91 31.89 0.22 -2.24 16 25 C -0.11 -2.49 6.83 31.67 0.22 -2.27 16 26 C -0.11 -3.39 5.22 31.32 0.16 -3.23 16 27 N -0.26 -8.95 11.85 -52.32 -0.62 -9.57 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.41 14.01 7.99 -92.71 -0.74 13.27 16 38 H 0.01 0.58 6.55 -2.38 -0.02 0.57 16 39 H 0.04 1.56 8.04 -2.39 -0.02 1.54 16 40 H 0.38 20.92 7.19 -92.70 -0.67 20.25 16 41 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.08 2.50 7.79 -2.39 -0.02 2.48 16 43 H 0.07 2.13 7.70 -2.38 -0.02 2.11 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 1.87 6.99 -2.39 -0.02 1.85 16 49 H 0.07 2.07 7.67 -2.38 -0.02 2.06 16 Total: -1.00 -79.02 396.95 2.75 -76.26 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.44 Total: 36.33 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.02 Total: 14.09 kcal Atomic # 7 Polarization: -147.89 SS G_CDS: -4.80 Total: -152.69 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -79.02 2.75 -76.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568000198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.498 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds