Wall clock time and date at job start Tue Mar 31 2020 19:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47032 * 239.99554 * 2 1 3 5 5 N 1.46505 * 109.46980 * 119.99909 * 2 1 3 6 6 N 1.28717 * 125.32152 * 0.02562 * 5 2 1 7 7 N 1.28982 * 108.98858 * 179.97438 * 6 5 2 8 8 C 1.34185 * 107.25182 * 0.02562 * 7 6 5 9 9 C 1.48004 * 126.69966 * 179.97438 * 8 7 6 10 10 O 1.21536 * 120.00434 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00208 * 0.02562 * 9 8 7 12 12 C 1.47026 * 125.64285 * 359.97438 * 11 9 8 13 13 C 1.54321 * 107.26791 * 181.07596 * 12 11 9 14 14 C 1.55448 * 102.96961 * 22.19024 * 13 12 11 15 15 C 1.53007 * 111.01067 * 82.52458 * 14 13 12 16 16 C 1.53000 * 111.11787 * 206.45980 * 14 13 12 17 17 N 1.46496 * 109.47134 * 173.55556 * 16 14 13 18 18 C 1.36933 * 120.00449 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99734 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00600 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99965 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00265 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46766 * 60.00746 * 22 20 18 24 24 H 1.48498 * 109.47184 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47494 * 300.00464 * 22 20 18 26 26 C 1.47419 * 125.65139 * 179.97438 * 11 9 8 27 27 N 1.28871 * 125.31668 * 180.33925 * 5 2 1 28 28 H 1.08996 * 109.47297 * 299.99936 * 1 2 3 29 29 H 1.08992 * 109.47232 * 60.00490 * 1 2 3 30 30 H 1.09008 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47117 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46574 * 299.99742 * 3 2 1 33 33 H 1.08996 * 109.46980 * 59.99869 * 3 2 1 34 34 H 1.08994 * 109.47201 * 299.99691 * 4 2 1 35 35 H 1.08995 * 109.46805 * 60.00592 * 4 2 1 36 36 H 1.08997 * 109.46764 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.88266 * 300.48971 * 12 11 9 38 38 H 1.09000 * 109.88221 * 61.65788 * 12 11 9 39 39 H 1.08998 * 110.71927 * 140.55469 * 13 12 11 40 40 H 1.08998 * 110.72073 * 263.64892 * 13 12 11 41 41 H 1.08997 * 109.46961 * 306.50030 * 15 14 13 42 42 H 1.09003 * 109.46792 * 66.50328 * 15 14 13 43 43 H 1.08997 * 109.46833 * 186.50296 * 15 14 13 44 44 H 1.09001 * 109.47578 * 293.56064 * 16 14 13 45 45 H 1.09003 * 109.46933 * 53.55793 * 16 14 13 46 46 H 0.97006 * 119.99700 * 0.02562 * 17 16 14 47 47 H 0.96999 * 120.00131 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.36926 * 274.69484 * 26 11 9 49 49 H 1.08995 * 110.36556 * 36.90768 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2762 -1.2169 2.1068 7 7 2.0307 -1.7402 3.0126 8 6 3.3029 -1.5261 2.6433 9 6 4.5189 -1.9474 3.3741 10 8 5.6182 -1.6872 2.9258 11 7 4.4074 -2.6198 4.5369 12 6 3.1457 -2.9981 5.1902 13 6 3.5092 -3.7246 6.5023 14 6 4.9487 -3.2164 6.7953 15 6 4.9186 -1.8535 7.4901 16 6 5.7348 -4.2345 7.6237 17 7 7.1261 -3.7930 7.7481 18 6 8.0246 -4.5502 8.4513 19 1 7.7076 -5.4732 8.9139 20 6 9.3430 -4.1321 8.5687 21 7 9.7295 -3.0074 8.0045 22 14 10.5684 -5.1647 9.5286 23 1 10.6728 -6.5109 8.9103 24 1 11.8982 -4.5042 9.5048 25 1 10.1084 -5.2998 10.9340 26 6 5.5301 -3.0977 5.3642 27 7 3.2580 -0.8612 1.5041 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.5603 -2.1055 5.4106 38 1 2.5781 -3.6656 4.5418 39 1 2.8284 -3.4372 7.3035 40 1 3.5006 -4.8052 6.3599 41 1 4.3176 -1.1595 6.9026 42 1 4.4822 -1.9616 8.4831 43 1 5.9344 -1.4688 7.5795 44 1 5.2898 -4.3173 8.6154 45 1 5.7047 -5.2057 7.1298 46 1 7.4109 -2.9641 7.3323 47 1 10.6509 -2.7154 8.0862 48 1 5.8736 -4.0704 5.0122 49 1 6.3482 -2.3778 5.3456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569669628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:12 Heat of formation + Delta-G solvation = 108.790107 kcal Electronic energy + Delta-G solvation = -29628.412963 eV Core-core repulsion = 25629.376657 eV Total energy + Delta-G solvation = -3999.036306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.63152 -40.11161 -38.20229 -37.80805 -34.83895 -33.74491 -32.97160 -32.32496 -30.45539 -29.08587 -28.24446 -28.14862 -27.13595 -25.93367 -24.76252 -24.46657 -23.22776 -21.93281 -21.05911 -19.96100 -18.83968 -17.71308 -17.64014 -17.12860 -16.61018 -16.05936 -15.67605 -14.83909 -14.77395 -14.57951 -14.38332 -14.17404 -13.92129 -13.60866 -13.48578 -13.20330 -13.10020 -12.98064 -12.86987 -12.74675 -12.44528 -12.42340 -12.14057 -12.11182 -12.01912 -11.73183 -11.63275 -11.56834 -11.20902 -11.18590 -10.98694 -10.77869 -10.57861 -10.46379 -10.39990 -10.29328 -10.22958 -9.92619 -9.58394 -8.83055 -8.55290 -6.87585 -5.71089 -3.00095 0.83549 1.33643 1.39712 2.66743 3.08504 3.48024 3.52246 3.53524 3.61478 3.80208 3.91692 4.02456 4.31781 4.59943 4.70460 4.79340 4.82417 4.84085 4.86062 5.00491 5.03340 5.05762 5.05929 5.09554 5.29874 5.41117 5.44465 5.48702 5.49608 5.60844 5.63681 5.71272 5.82141 5.86135 5.95133 6.09714 6.12199 6.16775 6.22474 6.29100 6.42489 6.52574 6.67471 6.77413 6.87099 7.43157 7.74105 7.88331 8.11702 8.47300 9.58517 10.15711 10.50161 11.51514 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.002254 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.868416 B =12421.257636 C =13028.449805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.126 5.126 6 N -0.060 5.060 7 N -0.253 5.253 8 C 0.135 3.865 9 C 0.623 3.377 10 O -0.507 6.507 11 N -0.594 5.594 12 C 0.107 3.893 13 C -0.122 4.122 14 C -0.078 4.078 15 C -0.130 4.130 16 C 0.170 3.830 17 N -0.731 5.731 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.124 3.876 27 N -0.246 5.246 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.079 0.921 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.643 7.181 -17.505 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.041 5.041 6 N -0.053 5.053 7 N -0.128 5.128 8 C -0.149 4.149 9 C 0.405 3.595 10 O -0.379 6.379 11 N -0.327 5.327 12 C -0.016 4.016 13 C -0.161 4.161 14 C -0.079 4.079 15 C -0.187 4.187 16 C 0.042 3.958 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C 0.003 3.997 27 N -0.099 5.099 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.097 0.903 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.553 7.323 -17.860 30.453 hybrid contribution 1.214 -0.331 0.450 1.336 sum -22.340 6.993 -17.410 29.173 Atomic orbital electron populations 1.22104 0.89791 1.04722 1.04442 1.21519 0.96589 0.92902 0.79391 1.22266 1.03649 0.91822 1.04190 1.22263 1.03628 1.01094 0.94917 1.50741 1.00968 1.34289 1.18080 1.78867 1.21833 1.08991 0.95587 1.76232 1.00147 1.17439 1.18987 1.25293 0.94490 1.01796 0.93282 1.15651 0.84637 0.79072 0.80140 1.90887 1.25293 1.55234 1.66494 1.48201 1.10174 1.53955 1.20414 1.22162 0.85448 0.99921 0.94037 1.22802 0.96706 1.00534 0.96044 1.22032 0.94351 0.97523 0.93987 1.21680 1.02821 0.94728 0.99464 1.20590 0.85975 0.93505 0.95700 1.42372 1.03824 1.27210 1.64167 1.19155 0.89909 1.02814 1.25256 0.91247 1.24738 0.97324 0.97624 1.01231 1.69648 1.17095 1.22501 1.48790 0.86275 0.80777 0.79418 0.79735 1.21316 1.21763 1.21345 1.22471 0.88341 1.00600 0.88304 1.75009 1.02585 1.17069 1.15248 0.90487 0.89080 0.90493 0.90130 0.88945 0.91258 0.91277 0.88941 0.90152 0.90721 0.90842 0.89772 0.90222 0.93599 0.92362 0.91256 0.95655 0.95993 0.78078 0.93445 0.90320 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 7.90 37.16 0.29 -0.34 16 2 C 0.18 1.12 1.30 -131.81 -0.17 0.95 16 3 C -0.16 -0.84 8.66 37.16 0.32 -0.52 16 4 C -0.16 -0.82 8.67 37.16 0.32 -0.50 16 5 N -0.13 -1.37 3.72 0.53 0.00 -1.37 16 6 N -0.06 -0.72 12.21 60.35 0.74 0.01 16 7 N -0.25 -3.47 10.09 32.10 0.32 -3.15 16 8 C 0.14 2.06 7.97 -156.24 -1.24 0.81 16 9 C 0.62 10.76 7.87 -12.26 -0.10 10.67 16 10 O -0.51 -10.45 17.35 5.33 0.09 -10.36 16 11 N -0.59 -9.31 3.31 -171.57 -0.57 -9.88 16 12 C 0.11 1.35 5.16 -3.06 -0.02 1.34 16 13 C -0.12 -1.50 5.93 -24.74 -0.15 -1.65 16 14 C -0.08 -1.23 0.63 -152.19 -0.10 -1.33 16 15 C -0.13 -2.05 8.43 37.16 0.31 -1.74 16 16 C 0.17 3.30 5.24 -4.04 -0.02 3.28 16 17 N -0.73 -18.17 5.17 -59.91 -0.31 -18.48 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 22 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.12 2.14 5.32 -2.53 -0.01 2.13 16 27 N -0.25 -3.44 11.85 32.11 0.38 -3.06 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.91 7.66 -51.93 -0.40 0.52 16 38 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 39 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 40 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 41 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.28 7.20 -51.93 -0.37 0.91 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 46 H 0.38 10.12 6.31 -40.82 -0.26 9.87 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 48 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 49 H 0.09 1.75 7.77 -51.93 -0.40 1.35 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -34.37 398.64 -6.55 -40.92 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.11 Total: 3.70 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.80 Total: 5.79 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: 1.29 Total: -63.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.37 -6.55 -40.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569669628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.710 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds