Wall clock time and date at job start Tue Mar 31 2020 19:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47032 * 239.99554 * 2 1 3 5 5 N 1.46505 * 109.46980 * 119.99909 * 2 1 3 6 6 N 1.28717 * 125.32152 * 0.02562 * 5 2 1 7 7 N 1.28982 * 108.98858 * 179.97438 * 6 5 2 8 8 C 1.34185 * 107.25182 * 0.02562 * 7 6 5 9 9 C 1.48004 * 126.69966 * 179.97438 * 8 7 6 10 10 O 1.21536 * 120.00434 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00208 * 0.02562 * 9 8 7 12 12 C 1.47026 * 125.64285 * 359.97438 * 11 9 8 13 13 C 1.54321 * 107.26791 * 181.07596 * 12 11 9 14 14 C 1.55448 * 102.96961 * 22.19024 * 13 12 11 15 15 C 1.53007 * 111.01067 * 82.52458 * 14 13 12 16 16 C 1.53000 * 111.11787 * 206.45980 * 14 13 12 17 17 N 1.46496 * 109.47134 * 173.55556 * 16 14 13 18 18 C 1.36933 * 120.00449 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99734 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00600 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99965 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00265 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46766 * 60.00746 * 22 20 18 24 24 H 1.48498 * 109.47184 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47494 * 300.00464 * 22 20 18 26 26 C 1.47419 * 125.65139 * 179.97438 * 11 9 8 27 27 N 1.28871 * 125.31668 * 180.33925 * 5 2 1 28 28 H 1.08996 * 109.47297 * 299.99936 * 1 2 3 29 29 H 1.08992 * 109.47232 * 60.00490 * 1 2 3 30 30 H 1.09008 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47117 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46574 * 299.99742 * 3 2 1 33 33 H 1.08996 * 109.46980 * 59.99869 * 3 2 1 34 34 H 1.08994 * 109.47201 * 299.99691 * 4 2 1 35 35 H 1.08995 * 109.46805 * 60.00592 * 4 2 1 36 36 H 1.08997 * 109.46764 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.88266 * 300.48971 * 12 11 9 38 38 H 1.09000 * 109.88221 * 61.65788 * 12 11 9 39 39 H 1.08998 * 110.71927 * 140.55469 * 13 12 11 40 40 H 1.08998 * 110.72073 * 263.64892 * 13 12 11 41 41 H 1.08997 * 109.46961 * 306.50030 * 15 14 13 42 42 H 1.09003 * 109.46792 * 66.50328 * 15 14 13 43 43 H 1.08997 * 109.46833 * 186.50296 * 15 14 13 44 44 H 1.09001 * 109.47578 * 293.56064 * 16 14 13 45 45 H 1.09003 * 109.46933 * 53.55793 * 16 14 13 46 46 H 0.97006 * 119.99700 * 0.02562 * 17 16 14 47 47 H 0.96999 * 120.00131 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.36926 * 274.69484 * 26 11 9 49 49 H 1.08995 * 110.36556 * 36.90768 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2762 -1.2169 2.1068 7 7 2.0307 -1.7402 3.0126 8 6 3.3029 -1.5261 2.6433 9 6 4.5189 -1.9474 3.3741 10 8 5.6182 -1.6872 2.9258 11 7 4.4074 -2.6198 4.5369 12 6 3.1457 -2.9981 5.1902 13 6 3.5092 -3.7246 6.5023 14 6 4.9487 -3.2164 6.7953 15 6 4.9186 -1.8535 7.4901 16 6 5.7348 -4.2345 7.6237 17 7 7.1261 -3.7930 7.7481 18 6 8.0246 -4.5502 8.4513 19 1 7.7076 -5.4732 8.9139 20 6 9.3430 -4.1321 8.5687 21 7 9.7295 -3.0074 8.0045 22 14 10.5684 -5.1647 9.5286 23 1 10.6728 -6.5109 8.9103 24 1 11.8982 -4.5042 9.5048 25 1 10.1084 -5.2998 10.9340 26 6 5.5301 -3.0977 5.3642 27 7 3.2580 -0.8612 1.5041 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.5603 -2.1055 5.4106 38 1 2.5781 -3.6656 4.5418 39 1 2.8284 -3.4372 7.3035 40 1 3.5006 -4.8052 6.3599 41 1 4.3176 -1.1595 6.9026 42 1 4.4822 -1.9616 8.4831 43 1 5.9344 -1.4688 7.5795 44 1 5.2898 -4.3173 8.6154 45 1 5.7047 -5.2057 7.1298 46 1 7.4109 -2.9641 7.3323 47 1 10.6509 -2.7154 8.0862 48 1 5.8736 -4.0704 5.0122 49 1 6.3482 -2.3778 5.3456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569669628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:11 Heat of formation + Delta-G solvation = 85.082533 kcal Electronic energy + Delta-G solvation = -29629.441000 eV Core-core repulsion = 25629.376657 eV Total energy + Delta-G solvation = -4000.064344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.62561 -41.42349 -39.39346 -38.61314 -36.54100 -34.78195 -34.46041 -33.49335 -32.21659 -30.40469 -28.80256 -28.55183 -28.27253 -27.54801 -25.89713 -25.65703 -24.74660 -23.38870 -21.90360 -21.07696 -20.23289 -19.28287 -18.61874 -18.35730 -17.70598 -17.40698 -16.96519 -16.55114 -15.75982 -15.53959 -15.34056 -15.24324 -15.17182 -15.14183 -14.78335 -14.48348 -14.14861 -14.02697 -13.58509 -13.50480 -13.43525 -13.27353 -13.23260 -13.02830 -12.93261 -12.85632 -12.81266 -12.65803 -12.63358 -12.31964 -12.19953 -12.13399 -12.12321 -12.01067 -11.73205 -11.63161 -11.52646 -11.45459 -11.38014 -10.89577 -9.86265 -8.94553 -7.90625 -5.18966 -0.20693 0.23331 0.60060 1.48569 1.49170 1.52000 1.57799 1.79478 2.58370 2.63944 2.88917 3.37177 3.43942 3.47445 3.55960 3.57689 3.63492 3.85988 3.90307 4.14218 4.27285 4.30981 4.36696 4.37891 4.40104 4.51297 4.57344 4.59380 4.66873 4.72145 4.72736 4.73197 4.78606 4.91705 4.98831 5.01434 5.08819 5.09872 5.10887 5.15012 5.16698 5.22507 5.23872 5.31292 5.48147 5.54134 6.15744 6.30845 6.62840 7.01950 7.37476 8.14788 8.36347 9.32878 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.002254 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.868416 B =12421.257636 C =13028.449805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.158 4.158 5 N -0.108 5.108 6 N -0.056 5.056 7 N -0.255 5.255 8 C 0.119 3.881 9 C 0.620 3.380 10 O -0.555 6.555 11 N -0.589 5.589 12 C 0.107 3.893 13 C -0.108 4.108 14 C -0.070 4.070 15 C -0.123 4.123 16 C 0.169 3.831 17 N -0.744 5.744 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.300 1.300 25 H -0.276 1.276 26 C 0.128 3.872 27 N -0.261 5.261 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.130 0.870 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.037 0.963 45 H 0.028 0.972 46 H 0.373 0.627 47 H 0.249 0.751 48 H 0.068 0.932 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.003 6.720 -18.011 33.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.081 3.919 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.025 5.025 6 N -0.048 5.048 7 N -0.129 5.129 8 C -0.164 4.164 9 C 0.403 3.597 10 O -0.430 6.430 11 N -0.321 5.321 12 C -0.014 4.014 13 C -0.146 4.146 14 C -0.071 4.071 15 C -0.180 4.180 16 C 0.042 3.958 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.098 0.902 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.802 3.198 23 H -0.205 1.205 24 H -0.226 1.226 25 H -0.202 1.202 26 C 0.006 3.994 27 N -0.115 5.115 28 H 0.090 0.910 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.206 0.794 47 H 0.058 0.942 48 H 0.086 0.914 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.004 6.821 -18.343 33.350 hybrid contribution 2.118 -0.147 0.485 2.178 sum -24.886 6.674 -17.858 31.349 Atomic orbital electron populations 1.22176 0.87582 1.04896 1.05976 1.22237 0.98255 0.93252 0.78183 1.22315 1.02385 0.91221 1.05747 1.22311 1.02381 1.01245 0.95683 1.51320 0.99873 1.32875 1.18436 1.78791 1.21504 1.08890 0.95608 1.76179 0.99322 1.17835 1.19612 1.24818 0.94230 1.03354 0.93982 1.15932 0.84804 0.78625 0.80304 1.90849 1.27205 1.57184 1.67802 1.48231 1.10885 1.53120 1.19845 1.22373 0.84062 1.00745 0.94211 1.22824 0.94009 1.01286 0.96470 1.21900 0.96319 0.96862 0.92035 1.21603 1.00968 0.94839 1.00598 1.20772 0.83646 0.94532 0.96836 1.42609 1.05858 1.26605 1.63671 1.19619 0.90486 1.02899 1.24114 0.90249 1.25577 0.99437 0.99035 1.03116 1.69831 1.16938 1.24538 1.51017 0.85213 0.77909 0.77875 0.78775 1.20466 1.22641 1.20182 1.22261 0.88288 0.98941 0.89930 1.74977 1.04277 1.17164 1.15063 0.91042 0.85441 0.90971 0.92147 0.85174 0.91891 0.91808 0.85182 0.92143 0.89683 0.89412 0.86816 0.88775 0.92283 0.90793 0.94838 0.94487 0.95406 0.79446 0.94226 0.91373 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 7.90 71.98 0.57 -0.22 16 2 C 0.16 1.72 1.30 3.60 0.00 1.72 16 3 C -0.16 -1.36 8.66 71.98 0.62 -0.74 16 4 C -0.16 -1.31 8.67 71.98 0.62 -0.69 16 5 N -0.11 -2.26 3.72 -152.24 -0.57 -2.83 16 6 N -0.06 -1.27 12.21 37.02 0.45 -0.82 16 7 N -0.26 -6.75 10.09 -52.36 -0.53 -7.27 16 8 C 0.12 3.66 7.97 137.15 1.09 4.76 16 9 C 0.62 22.24 7.87 86.83 0.68 22.92 16 10 O -0.55 -24.38 17.35 -3.83 -0.07 -24.45 16 11 N -0.59 -18.65 3.31 -815.00 -2.70 -21.35 16 12 C 0.11 2.50 5.16 86.73 0.45 2.95 16 13 C -0.11 -2.32 5.93 31.88 0.19 -2.13 16 14 C -0.07 -2.17 0.63 -50.68 -0.03 -2.20 16 15 C -0.12 -3.85 8.43 71.98 0.61 -3.24 16 16 C 0.17 6.40 5.24 86.38 0.45 6.85 16 17 N -0.74 -37.66 5.17 -343.46 -1.78 -39.44 16 18 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -61.43 13.06 21.65 0.28 -61.14 16 22 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.13 4.58 5.32 86.86 0.46 5.04 16 27 N -0.26 -7.36 11.85 -52.32 -0.62 -7.98 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.86 7.66 -2.39 -0.02 1.85 16 38 H 0.09 1.87 7.77 -2.39 -0.02 1.85 16 39 H 0.11 1.87 8.05 -2.39 -0.02 1.85 16 40 H 0.09 1.82 8.03 -2.39 -0.02 1.80 16 41 H 0.06 1.67 7.82 -2.39 -0.02 1.65 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 45 H 0.03 1.04 8.12 -2.39 -0.02 1.03 16 46 H 0.37 20.54 6.31 -92.70 -0.58 19.96 16 47 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.07 2.55 8.04 -2.39 -0.02 2.54 16 49 H 0.05 2.25 7.77 -2.39 -0.02 2.23 16 Total: -1.00 -78.36 398.64 3.89 -74.47 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.36 Total: 23.43 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 7.03 Total: 18.28 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -5.46 Total: -140.84 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -78.36 3.89 -74.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569669628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.552 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds