Wall clock time and date at job start Tue Mar 31 2020 20:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36942 * 119.99958 * 2 1 4 4 H 1.08007 * 119.99437 * 146.15572 * 3 2 1 5 5 C 1.38808 * 119.99951 * 326.43251 * 3 2 1 6 6 N 1.31618 * 120.00032 * 4.03823 * 5 3 2 7 7 Si 1.86804 * 119.99738 * 184.04139 * 5 3 2 8 8 H 1.48501 * 109.47018 * 60.00121 * 7 5 3 9 9 H 1.48501 * 109.46937 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47022 * 300.00047 * 7 5 3 11 11 C 1.46501 * 119.99963 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46826 * 264.48728 * 11 2 1 13 13 H 1.09001 * 109.87126 * 304.75731 * 12 11 2 14 14 C 1.54318 * 109.88198 * 65.77629 * 12 11 2 15 15 C 1.55156 * 102.94350 * 141.61122 * 14 12 11 16 16 C 1.54914 * 101.58111 * 324.49838 * 15 14 12 17 17 N 1.47014 * 109.88061 * 183.58576 * 12 11 2 18 18 C 1.34779 * 125.65257 * 61.62470 * 17 12 11 19 19 O 1.21545 * 119.99870 * 4.92931 * 18 17 12 20 20 C 1.48002 * 120.00399 * 184.93853 * 18 17 12 21 21 N 1.34188 * 126.69757 * 0.02562 * 20 18 17 22 22 N 1.28988 * 107.25345 * 180.02562 * 21 20 18 23 23 N 1.28718 * 108.98645 * 359.97438 * 22 21 20 24 24 C 1.46494 * 125.32237 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.46719 * 359.97438 * 24 23 22 26 26 C 1.53003 * 109.47379 * 119.97778 * 24 23 22 27 27 C 1.52995 * 109.47828 * 239.98171 * 24 23 22 28 28 N 1.28867 * 109.35956 * 359.73453 * 23 22 21 29 29 H 1.08998 * 109.47408 * 94.66114 * 1 2 3 30 30 H 1.08999 * 109.46800 * 214.66556 * 1 2 3 31 31 H 1.09003 * 109.46865 * 334.66323 * 1 2 3 32 32 H 0.96999 * 119.99426 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47067 * 24.48343 * 11 2 1 34 34 H 1.08997 * 109.47141 * 144.49014 * 11 2 1 35 35 H 1.08999 * 110.72168 * 259.97184 * 14 12 11 36 36 H 1.08999 * 110.72337 * 23.07296 * 14 12 11 37 37 H 1.08998 * 111.00752 * 82.56750 * 15 14 12 38 38 H 1.08994 * 111.00688 * 206.42300 * 15 14 12 39 39 H 1.09001 * 110.36965 * 155.84627 * 16 15 14 40 40 H 1.08994 * 110.36628 * 278.17276 * 16 15 14 41 41 H 1.08997 * 109.47592 * 60.00170 * 25 24 23 42 42 H 1.09002 * 109.46845 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.47195 * 299.99269 * 25 24 23 44 44 H 1.08994 * 109.46827 * 60.00336 * 26 24 23 45 45 H 1.08992 * 109.47206 * 180.02562 * 26 24 23 46 46 H 1.08999 * 109.46931 * 300.00445 * 26 24 23 47 47 H 1.09001 * 109.47055 * 59.99598 * 27 24 23 48 48 H 1.08992 * 109.47814 * 179.97438 * 27 24 23 49 49 H 1.09004 * 109.46991 * 300.00469 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0924 1.2651 0.5210 5 6 1.6292 2.2878 -0.6647 6 7 0.4415 2.2165 -1.2272 7 14 2.6147 3.8719 -0.7608 8 1 3.9034 3.6120 -1.4514 9 1 1.8435 4.8893 -1.5193 10 1 2.8807 4.3733 0.6115 11 6 2.1975 -1.2687 -0.0006 12 6 2.5724 -1.6417 1.4352 13 1 3.1299 -0.8264 1.8962 14 6 1.2961 -1.9327 2.2522 15 6 1.7198 -3.1292 3.1445 16 6 2.6597 -3.9099 2.1921 17 7 3.3817 -2.8691 1.4378 18 6 4.5844 -3.0183 0.8480 19 8 5.1281 -2.0644 0.3267 20 6 5.2428 -4.3437 0.8348 21 7 4.7672 -5.4808 1.3654 22 7 5.6408 -6.4027 1.1404 23 7 6.6320 -5.8924 0.4971 24 6 7.8239 -6.6230 0.0593 25 6 7.7093 -8.0879 0.4857 26 6 7.9404 -6.5428 -1.4642 27 6 9.0669 -6.0015 0.6992 28 7 6.4097 -4.6394 0.2938 29 1 -0.3634 -0.0835 -1.0242 30 1 -0.3633 -0.8452 0.5845 31 1 -0.3633 0.9289 0.4398 32 1 0.0777 2.9866 -1.6914 33 1 1.5692 -2.0508 -0.4268 34 1 3.1036 -1.1649 -0.5974 35 1 1.0253 -1.0723 2.8642 36 1 0.4724 -2.2112 1.5949 37 1 2.2570 -2.7863 4.0288 38 1 0.8567 -3.7335 3.4235 39 1 3.3600 -4.5182 2.7646 40 1 2.0787 -4.5353 1.5144 41 1 6.8238 -8.5309 0.0299 42 1 8.5959 -8.6317 0.1596 43 1 7.6265 -8.1450 1.5710 44 1 8.0221 -5.4992 -1.7679 45 1 8.8269 -7.0868 -1.7899 46 1 7.0549 -6.9856 -1.9201 47 1 8.9839 -6.0587 1.7845 48 1 9.9536 -6.5454 0.3738 49 1 9.1485 -4.9578 0.3956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570529937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:56 Heat of formation + Delta-G solvation = 105.075025 kcal Electronic energy + Delta-G solvation = -30127.701712 eV Core-core repulsion = 26128.504308 eV Total energy + Delta-G solvation = -3999.197404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.60985 -41.30266 -38.91531 -38.56696 -37.11592 -34.71854 -34.00369 -33.37559 -32.47017 -30.67035 -28.62210 -28.55467 -27.99362 -26.90895 -26.64639 -25.60839 -23.98261 -22.80545 -22.02089 -21.86723 -20.50423 -18.79240 -18.61798 -18.39403 -17.78380 -17.59558 -16.87892 -16.56180 -15.71925 -15.48600 -15.33974 -15.24037 -15.11020 -15.05967 -14.78335 -14.41467 -14.03605 -13.98193 -13.72649 -13.49715 -13.30964 -13.23063 -13.20332 -13.08947 -12.85793 -12.76769 -12.65833 -12.61296 -12.46303 -12.35941 -12.20528 -12.13598 -12.11853 -11.98075 -11.84038 -11.63510 -11.52898 -11.41938 -11.38527 -10.60698 -9.88629 -8.59555 -7.89678 -5.43995 -0.17823 0.25198 0.62319 1.41863 1.45833 1.51362 1.55227 1.85813 2.47255 2.69021 2.90556 3.26625 3.47450 3.51260 3.61688 3.63944 3.74940 3.83567 3.96006 4.06192 4.24980 4.36233 4.40570 4.41036 4.48535 4.51074 4.58175 4.59100 4.72521 4.72664 4.78804 4.87771 4.93258 4.97379 5.01339 5.08408 5.09658 5.12215 5.16923 5.17440 5.22630 5.33521 5.43095 5.45133 5.62948 5.73251 6.25658 6.38628 6.72875 7.04383 7.17540 7.83157 8.30930 9.14520 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002862 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.353970 B = 9780.959833 C =10931.743248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.609 5.609 3 C -0.269 4.269 4 H 0.053 0.947 5 C -0.038 4.038 6 N -0.931 5.931 7 Si 0.963 3.037 8 H -0.285 1.285 9 H -0.286 1.286 10 H -0.273 1.273 11 C 0.151 3.849 12 C 0.127 3.873 13 H 0.049 0.951 14 C -0.108 4.108 15 C -0.118 4.118 16 C 0.099 3.901 17 N -0.588 5.588 18 C 0.617 3.383 19 O -0.550 6.550 20 C 0.121 3.879 21 N -0.257 5.257 22 N -0.056 5.056 23 N -0.109 5.109 24 C 0.159 3.841 25 C -0.148 4.148 26 C -0.159 4.159 27 C -0.158 4.158 28 N -0.262 5.262 29 H -0.011 1.011 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.252 0.748 33 H 0.050 0.950 34 H 0.018 0.982 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.130 0.870 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.130 0.870 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.269 -26.037 7.416 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.333 5.333 3 C -0.399 4.399 4 H 0.070 0.930 5 C -0.234 4.234 6 N -0.576 5.576 7 Si 0.791 3.209 8 H -0.211 1.211 9 H -0.211 1.211 10 H -0.198 1.198 11 C 0.024 3.976 12 C 0.022 3.978 13 H 0.067 0.933 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.023 4.023 17 N -0.321 5.321 18 C 0.400 3.600 19 O -0.425 6.425 20 C -0.162 4.162 21 N -0.131 5.131 22 N -0.048 5.048 23 N -0.026 5.026 24 C 0.081 3.919 25 C -0.206 4.206 26 C -0.217 4.217 27 C -0.216 4.216 28 N -0.116 5.116 29 H 0.007 0.993 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.149 0.851 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.148 0.852 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.591 -26.031 7.113 30.215 hybrid contribution 0.319 1.997 -0.648 2.124 sum 13.910 -24.034 6.464 28.512 Atomic orbital electron populations 1.20669 0.82079 0.97694 0.96301 1.43849 1.02150 1.00611 1.86653 1.19238 1.04363 0.89477 1.26815 0.92950 1.25983 0.97901 1.02249 0.97253 1.70163 1.17146 1.30674 1.39585 0.85426 0.78129 0.79351 0.78035 1.21129 1.21128 1.19838 1.20979 0.94853 0.87899 0.93881 1.22346 0.91944 0.84739 0.98805 0.93286 1.22577 0.94716 0.99508 0.97828 1.22844 0.99983 0.95911 0.96871 1.22758 0.95433 0.89757 0.94317 1.48381 1.16501 1.15736 1.51444 1.16006 0.80676 0.83858 0.79486 1.90871 1.64586 1.40075 1.46982 1.24896 0.92376 0.96483 1.02456 1.76155 1.21273 0.96497 1.19164 1.78769 0.93877 1.21900 1.10224 1.51309 1.16660 1.03286 1.31341 1.22230 0.78466 0.93340 0.97908 1.22173 1.05940 0.89028 1.03417 1.22316 1.05555 1.04131 0.89716 1.22308 0.95773 1.02263 1.01244 1.74985 1.17179 0.99163 1.20283 0.99282 0.94523 0.94771 0.93909 0.93189 0.96326 0.90286 0.90033 0.90146 0.86376 0.88627 0.89898 0.91067 0.85432 0.90880 0.92289 0.85126 0.91941 0.91725 0.85159 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.87 8.70 127.77 1.11 9.98 16 2 N -0.61 -32.55 2.77 -726.93 -2.01 -34.56 16 3 C -0.27 -15.94 9.55 84.03 0.80 -15.14 16 4 H 0.05 3.18 7.83 -2.91 -0.02 3.15 16 5 C -0.04 -2.23 5.33 84.86 0.45 -1.78 16 6 N -0.93 -56.72 10.66 21.65 0.23 -56.48 16 7 Si 0.96 47.77 29.56 68.60 2.03 49.79 16 8 H -0.28 -14.19 7.11 99.48 0.71 -13.49 16 9 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 11 C 0.15 7.08 5.12 86.38 0.44 7.52 16 12 C 0.13 4.90 3.07 45.34 0.14 5.04 16 13 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.11 -3.20 5.62 31.78 0.18 -3.02 16 15 C -0.12 -2.48 7.09 31.99 0.23 -2.26 16 16 C 0.10 2.44 5.99 86.86 0.52 2.96 16 17 N -0.59 -20.31 3.06 -791.24 -2.42 -22.74 16 18 C 0.62 24.13 7.60 86.83 0.66 24.79 16 19 O -0.55 -26.43 16.27 -3.86 -0.06 -26.49 16 20 C 0.12 4.03 7.95 137.15 1.09 5.12 16 21 N -0.26 -7.28 9.82 -52.37 -0.51 -7.80 16 22 N -0.06 -1.36 12.21 37.02 0.45 -0.91 16 23 N -0.11 -2.49 3.72 -152.26 -0.57 -3.06 16 24 C 0.16 1.98 1.30 3.61 0.00 1.98 16 25 C -0.15 -0.98 7.90 71.98 0.57 -0.41 16 26 C -0.16 -1.68 8.66 71.98 0.62 -1.05 16 27 C -0.16 -1.55 8.66 71.98 0.62 -0.93 16 28 N -0.26 -8.05 11.85 -52.32 -0.62 -8.67 16 29 H -0.01 -0.61 7.79 -2.39 -0.02 -0.63 16 30 H 0.04 1.50 5.98 -2.39 -0.01 1.49 16 31 H 0.03 1.85 6.95 -2.39 -0.02 1.83 16 32 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.05 2.17 7.95 -2.39 -0.02 2.15 16 34 H 0.02 0.99 6.86 -2.39 -0.02 0.98 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.08 2.38 6.19 -2.39 -0.01 2.36 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.10 2.23 6.51 -2.39 -0.02 2.22 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -79.79 392.11 4.89 -74.89 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 0.94 Total: 3.20 kcal Atomic # 6 Polarization: 25.37 SS G_CDS: 7.44 Total: 32.81 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -5.45 Total: -134.21 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.06 Total: -26.49 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Total: -79.79 4.89 -74.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570529937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.968 kcal (2) G-P(sol) polarization free energy of solvation -79.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds