Wall clock time and date at job start Tue Mar 31 2020 20:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36941 * 120.00077 * 2 1 4 4 H 1.07991 * 120.00016 * 183.46116 * 3 2 1 5 5 C 1.38814 * 119.99786 * 3.45830 * 3 2 1 6 6 N 1.31623 * 120.00211 * 352.45599 * 5 3 2 7 7 Si 1.86800 * 119.99741 * 172.73438 * 5 3 2 8 8 H 1.48492 * 109.47213 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46975 * 119.99820 * 7 5 3 10 10 H 1.48497 * 109.46883 * 239.99373 * 7 5 3 11 11 C 1.46495 * 119.99699 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47445 * 267.03923 * 11 2 1 13 13 H 1.08994 * 109.87343 * 52.34659 * 12 11 2 14 14 C 1.54324 * 109.88081 * 291.17380 * 12 11 2 15 15 C 1.55157 * 102.94167 * 218.38622 * 14 12 11 16 16 C 1.54914 * 101.58069 * 35.50630 * 15 14 12 17 17 N 1.47016 * 109.88195 * 173.36787 * 12 11 2 18 18 C 1.34778 * 125.64774 * 298.31908 * 17 12 11 19 19 O 1.21535 * 119.99755 * 4.66940 * 18 17 12 20 20 C 1.48008 * 120.00272 * 184.67077 * 18 17 12 21 21 N 1.34188 * 126.69289 * 359.68521 * 20 18 17 22 22 N 1.28989 * 107.24718 * 179.89633 * 21 20 18 23 23 N 1.28713 * 108.98696 * 0.37421 * 22 21 20 24 24 C 1.46509 * 125.31926 * 179.72452 * 23 22 21 25 25 C 1.52997 * 109.47256 * 240.04344 * 24 23 22 26 26 C 1.52999 * 109.46723 * 0.04449 * 24 23 22 27 27 C 1.52999 * 109.46828 * 120.04057 * 24 23 22 28 28 N 1.28867 * 109.36277 * 359.76521 * 23 22 21 29 29 H 1.09002 * 109.46812 * 62.05397 * 1 2 3 30 30 H 1.08996 * 109.46818 * 182.05611 * 1 2 3 31 31 H 1.09005 * 109.46823 * 302.05822 * 1 2 3 32 32 H 0.96994 * 119.99632 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47415 * 27.04057 * 11 2 1 34 34 H 1.09007 * 109.47024 * 147.03973 * 11 2 1 35 35 H 1.08996 * 110.72145 * 336.75095 * 14 12 11 36 36 H 1.09000 * 110.72368 * 100.02688 * 14 12 11 37 37 H 1.08996 * 111.00875 * 277.43065 * 15 14 12 38 38 H 1.09008 * 111.00353 * 153.57558 * 15 14 12 39 39 H 1.08995 * 110.36563 * 204.15406 * 16 15 14 40 40 H 1.09001 * 110.36730 * 81.82785 * 16 15 14 41 41 H 1.09003 * 109.46955 * 59.99836 * 25 24 23 42 42 H 1.08995 * 109.47066 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.46995 * 300.00250 * 25 24 23 44 44 H 1.08998 * 109.47263 * 59.99911 * 26 24 23 45 45 H 1.09006 * 109.46770 * 180.02562 * 26 24 23 46 46 H 1.08993 * 109.47412 * 299.99478 * 26 24 23 47 47 H 1.09003 * 109.47468 * 60.00574 * 27 24 23 48 48 H 1.09002 * 109.47064 * 179.97438 * 27 24 23 49 49 H 1.08998 * 109.47446 * 300.00265 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2282 1.1868 -0.0565 5 6 1.4576 2.3870 0.0725 6 7 0.1439 2.3954 -0.0084 7 14 2.3911 3.9920 0.2771 8 1 3.8484 3.7131 0.3361 9 1 2.1033 4.8825 -0.8759 10 1 1.9634 4.6565 1.5344 11 6 2.1975 -1.2687 0.0006 12 6 2.5170 -1.6726 1.4413 13 1 1.6067 -1.6588 2.0406 14 6 3.5578 -0.7029 2.0396 15 6 4.4593 -1.6398 2.8862 16 6 4.4719 -2.9247 2.0209 17 7 3.1102 -3.0176 1.4637 18 6 2.5084 -4.1485 1.0450 19 8 1.4116 -4.0962 0.5240 20 6 3.1831 -5.4542 1.2195 21 7 4.3892 -5.6665 1.7681 22 7 4.6073 -6.9373 1.7324 23 7 3.5999 -7.5198 1.1822 24 6 3.4752 -8.9619 0.9559 25 6 3.3216 -9.2316 -0.5423 26 6 4.7278 -9.6699 1.4758 27 6 2.2458 -9.4901 1.6978 28 7 2.7186 -6.6362 0.8609 29 1 -0.3633 0.4816 -0.9079 30 1 -0.3633 -1.0270 0.0369 31 1 -0.3633 0.5455 0.8710 32 1 -0.3397 3.2347 0.0419 33 1 1.5865 -2.0412 -0.4663 34 1 3.1260 -1.1525 -0.5586 35 1 4.1353 -0.2219 1.2502 36 1 3.0732 0.0409 2.6722 37 1 4.0156 -1.8311 3.8632 38 1 5.4634 -1.2281 2.9888 39 1 4.6893 -3.7959 2.6386 40 1 5.2046 -2.8348 1.2189 41 1 4.1975 -8.8552 -1.0708 42 1 3.2284 -10.3044 -0.7107 43 1 2.4292 -8.7271 -0.9127 44 1 4.8372 -9.4778 2.5431 45 1 4.6352 -10.7428 1.3070 46 1 5.6037 -9.2937 0.9473 47 1 1.3533 -8.9856 1.3274 48 1 2.1526 -10.5629 1.5290 49 1 2.3551 -9.2979 2.7651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570529938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:01 Heat of formation + Delta-G solvation = 136.804542 kcal Electronic energy + Delta-G solvation = -30140.153017 eV Core-core repulsion = 26142.331507 eV Total energy + Delta-G solvation = -3997.821509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.55445 -39.87646 -38.02685 -37.26373 -35.27497 -33.68570 -32.78295 -31.43359 -31.19099 -28.94189 -28.15652 -28.10174 -25.91349 -25.57459 -25.07322 -24.56098 -22.58686 -21.16532 -20.98947 -20.45749 -19.09207 -17.56073 -17.46407 -16.85991 -16.76003 -16.10903 -15.26744 -14.81060 -14.74226 -14.56678 -14.25700 -14.12392 -13.61159 -13.46710 -13.26004 -13.06730 -12.99882 -12.92806 -12.68334 -12.52593 -12.40040 -12.37147 -12.07349 -12.00968 -11.75741 -11.67763 -11.25751 -11.15069 -11.11278 -10.87123 -10.71402 -10.59141 -10.49194 -10.43392 -10.23094 -10.08267 -9.98865 -9.64909 -9.56120 -8.55621 -8.33406 -6.80935 -5.56162 -2.97870 0.92053 1.42593 1.47030 2.80621 3.22816 3.42490 3.48343 3.50792 3.67840 3.93075 3.96569 4.07329 4.40593 4.56574 4.83120 4.88336 4.89635 4.91433 5.01988 5.04835 5.09614 5.10253 5.25812 5.29490 5.37186 5.47462 5.49664 5.54225 5.63451 5.74280 5.75248 5.88865 5.93046 6.02346 6.05977 6.19188 6.38875 6.41183 6.64291 6.70165 6.85957 6.98411 7.03220 7.64729 7.77160 7.81096 8.00713 8.04821 8.26581 8.46294 9.35146 9.98806 10.43452 11.43218 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002578 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.953916 B =10857.819936 C =11558.573983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.606 5.606 3 C -0.239 4.239 4 H 0.075 0.925 5 C -0.007 4.007 6 N -0.916 5.916 7 Si 0.904 3.096 8 H -0.280 1.280 9 H -0.292 1.292 10 H -0.291 1.291 11 C 0.146 3.854 12 C 0.117 3.883 13 H 0.074 0.926 14 C -0.107 4.107 15 C -0.138 4.138 16 C 0.094 3.906 17 N -0.589 5.589 18 C 0.621 3.379 19 O -0.505 6.505 20 C 0.139 3.861 21 N -0.257 5.257 22 N -0.062 5.062 23 N -0.127 5.127 24 C 0.177 3.823 25 C -0.161 4.161 26 C -0.152 4.152 27 C -0.161 4.161 28 N -0.247 5.247 29 H 0.039 0.961 30 H -0.005 1.005 31 H 0.044 0.956 32 H 0.248 0.752 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 -25.696 5.030 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.329 5.329 3 C -0.368 4.368 4 H 0.093 0.907 5 C -0.203 4.203 6 N -0.564 5.564 7 Si 0.734 3.266 8 H -0.205 1.205 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.017 3.983 12 C 0.013 3.987 13 H 0.092 0.908 14 C -0.145 4.145 15 C -0.176 4.176 16 C -0.029 4.029 17 N -0.323 5.323 18 C 0.402 3.598 19 O -0.377 6.377 20 C -0.145 4.145 21 N -0.131 5.131 22 N -0.054 5.054 23 N -0.042 5.042 24 C 0.096 3.904 25 C -0.219 4.219 26 C -0.210 4.210 27 C -0.219 4.219 28 N -0.100 5.100 29 H 0.057 0.943 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.110 0.890 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.714 -25.982 4.851 28.159 hybrid contribution 0.175 1.233 0.069 1.247 sum 9.889 -24.749 4.920 27.101 Atomic orbital electron populations 1.21063 0.81425 0.93302 1.01747 1.44021 1.02499 1.00308 1.86050 1.19349 0.90859 0.83546 1.43072 0.90681 1.24864 0.95642 0.97733 1.02063 1.70266 1.05175 1.24415 1.56574 0.86171 0.78843 0.84172 0.77368 1.20494 1.21970 1.21789 1.21082 0.96312 0.88872 0.92011 1.22882 0.96168 0.77671 1.01967 0.90763 1.22590 0.96082 0.96514 0.99341 1.22862 1.00941 0.95275 0.98548 1.22618 0.83163 0.99651 0.97480 1.48431 1.16615 1.06736 1.60489 1.15683 0.84212 0.79708 0.80191 1.90868 1.19245 1.85054 1.42529 1.25440 0.92036 0.95002 1.02071 1.76189 1.13984 1.05221 1.17720 1.78856 1.12309 1.01198 1.13068 1.50720 1.08559 1.10311 1.34575 1.21497 0.99792 0.70094 0.98992 1.22263 1.04413 1.04030 0.91212 1.22100 0.95035 1.00754 1.03152 1.22261 0.96127 1.02744 1.00763 1.75009 1.17838 0.97885 1.19291 0.94291 0.98671 0.93726 0.94107 0.92568 0.93985 0.90082 0.89707 0.91133 0.90120 0.88862 0.91260 0.91267 0.88992 0.90118 0.90520 0.89135 0.90501 0.90132 0.88995 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.49 8.99 59.85 0.54 5.03 16 2 N -0.61 -15.68 2.91 -181.11 -0.53 -16.21 16 3 C -0.24 -6.47 8.72 -15.06 -0.13 -6.60 16 4 H 0.08 1.95 6.95 -52.49 -0.36 1.58 16 5 C -0.01 -0.20 5.44 -17.43 -0.09 -0.29 16 6 N -0.92 -27.01 9.46 55.49 0.53 -26.49 16 7 Si 0.90 21.91 29.56 -169.99 -5.02 16.89 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 C 0.15 3.25 5.19 -4.04 -0.02 3.23 16 12 C 0.12 2.25 3.13 -66.95 -0.21 2.04 16 13 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 14 C -0.11 -1.82 5.49 -24.90 -0.14 -1.96 16 15 C -0.14 -1.81 7.09 -24.58 -0.17 -1.98 16 16 C 0.09 1.30 6.32 -2.53 -0.02 1.28 16 17 N -0.59 -10.05 3.06 -164.06 -0.50 -10.56 16 18 C 0.62 11.35 7.68 -12.25 -0.09 11.26 16 19 O -0.51 -10.83 15.89 5.34 0.08 -10.75 16 20 C 0.14 2.22 7.96 -156.25 -1.24 0.97 16 21 N -0.26 -3.70 9.60 32.10 0.31 -3.39 16 22 N -0.06 -0.78 12.21 60.35 0.74 -0.04 16 23 N -0.13 -1.45 3.72 0.53 0.00 -1.45 16 24 C 0.18 1.21 1.30 -131.82 -0.17 1.04 16 25 C -0.16 -0.91 8.66 37.16 0.32 -0.59 16 26 C -0.15 -0.70 7.90 37.16 0.29 -0.40 16 27 C -0.16 -0.89 8.66 37.16 0.32 -0.57 16 28 N -0.25 -3.62 11.85 32.11 0.38 -3.24 16 29 H 0.04 1.11 7.17 -51.93 -0.37 0.74 16 30 H -0.01 -0.13 7.77 -51.93 -0.40 -0.54 16 31 H 0.04 1.26 6.91 -51.93 -0.36 0.90 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 1.32 6.26 -51.93 -0.33 0.99 16 34 H 0.04 0.92 7.90 -51.92 -0.41 0.51 16 35 H 0.08 1.45 6.68 -51.93 -0.35 1.10 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.09 1.23 5.92 -51.93 -0.31 0.92 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -33.36 389.98 -6.90 -40.26 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.94 Total: -3.35 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -0.82 Total: 12.45 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.92 Total: -61.37 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.36 -6.90 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570529938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.063 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds