Wall clock time and date at job start Tue Mar 31 2020 20:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36941 * 120.00077 * 2 1 4 4 H 1.07991 * 120.00016 * 183.46116 * 3 2 1 5 5 C 1.38814 * 119.99786 * 3.45830 * 3 2 1 6 6 N 1.31623 * 120.00211 * 352.45599 * 5 3 2 7 7 Si 1.86800 * 119.99741 * 172.73438 * 5 3 2 8 8 H 1.48492 * 109.47213 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46975 * 119.99820 * 7 5 3 10 10 H 1.48497 * 109.46883 * 239.99373 * 7 5 3 11 11 C 1.46495 * 119.99699 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47445 * 267.03923 * 11 2 1 13 13 H 1.08994 * 109.87343 * 52.34659 * 12 11 2 14 14 C 1.54324 * 109.88081 * 291.17380 * 12 11 2 15 15 C 1.55157 * 102.94167 * 218.38622 * 14 12 11 16 16 C 1.54914 * 101.58069 * 35.50630 * 15 14 12 17 17 N 1.47016 * 109.88195 * 173.36787 * 12 11 2 18 18 C 1.34778 * 125.64774 * 298.31908 * 17 12 11 19 19 O 1.21535 * 119.99755 * 4.66940 * 18 17 12 20 20 C 1.48008 * 120.00272 * 184.67077 * 18 17 12 21 21 N 1.34188 * 126.69289 * 359.68521 * 20 18 17 22 22 N 1.28989 * 107.24718 * 179.89633 * 21 20 18 23 23 N 1.28713 * 108.98696 * 0.37421 * 22 21 20 24 24 C 1.46509 * 125.31926 * 179.72452 * 23 22 21 25 25 C 1.52997 * 109.47256 * 240.04344 * 24 23 22 26 26 C 1.52999 * 109.46723 * 0.04449 * 24 23 22 27 27 C 1.52999 * 109.46828 * 120.04057 * 24 23 22 28 28 N 1.28867 * 109.36277 * 359.76521 * 23 22 21 29 29 H 1.09002 * 109.46812 * 62.05397 * 1 2 3 30 30 H 1.08996 * 109.46818 * 182.05611 * 1 2 3 31 31 H 1.09005 * 109.46823 * 302.05822 * 1 2 3 32 32 H 0.96994 * 119.99632 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47415 * 27.04057 * 11 2 1 34 34 H 1.09007 * 109.47024 * 147.03973 * 11 2 1 35 35 H 1.08996 * 110.72145 * 336.75095 * 14 12 11 36 36 H 1.09000 * 110.72368 * 100.02688 * 14 12 11 37 37 H 1.08996 * 111.00875 * 277.43065 * 15 14 12 38 38 H 1.09008 * 111.00353 * 153.57558 * 15 14 12 39 39 H 1.08995 * 110.36563 * 204.15406 * 16 15 14 40 40 H 1.09001 * 110.36730 * 81.82785 * 16 15 14 41 41 H 1.09003 * 109.46955 * 59.99836 * 25 24 23 42 42 H 1.08995 * 109.47066 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.46995 * 300.00250 * 25 24 23 44 44 H 1.08998 * 109.47263 * 59.99911 * 26 24 23 45 45 H 1.09006 * 109.46770 * 180.02562 * 26 24 23 46 46 H 1.08993 * 109.47412 * 299.99478 * 26 24 23 47 47 H 1.09003 * 109.47468 * 60.00574 * 27 24 23 48 48 H 1.09002 * 109.47064 * 179.97438 * 27 24 23 49 49 H 1.08998 * 109.47446 * 300.00265 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2282 1.1868 -0.0565 5 6 1.4576 2.3870 0.0725 6 7 0.1439 2.3954 -0.0084 7 14 2.3911 3.9920 0.2771 8 1 3.8484 3.7131 0.3361 9 1 2.1033 4.8825 -0.8759 10 1 1.9634 4.6565 1.5344 11 6 2.1975 -1.2687 0.0006 12 6 2.5170 -1.6726 1.4413 13 1 1.6067 -1.6588 2.0406 14 6 3.5578 -0.7029 2.0396 15 6 4.4593 -1.6398 2.8862 16 6 4.4719 -2.9247 2.0209 17 7 3.1102 -3.0176 1.4637 18 6 2.5084 -4.1485 1.0450 19 8 1.4116 -4.0962 0.5240 20 6 3.1831 -5.4542 1.2195 21 7 4.3892 -5.6665 1.7681 22 7 4.6073 -6.9373 1.7324 23 7 3.5999 -7.5198 1.1822 24 6 3.4752 -8.9619 0.9559 25 6 3.3216 -9.2316 -0.5423 26 6 4.7278 -9.6699 1.4758 27 6 2.2458 -9.4901 1.6978 28 7 2.7186 -6.6362 0.8609 29 1 -0.3633 0.4816 -0.9079 30 1 -0.3633 -1.0270 0.0369 31 1 -0.3633 0.5455 0.8710 32 1 -0.3397 3.2347 0.0419 33 1 1.5865 -2.0412 -0.4663 34 1 3.1260 -1.1525 -0.5586 35 1 4.1353 -0.2219 1.2502 36 1 3.0732 0.0409 2.6722 37 1 4.0156 -1.8311 3.8632 38 1 5.4634 -1.2281 2.9888 39 1 4.6893 -3.7959 2.6386 40 1 5.2046 -2.8348 1.2189 41 1 4.1975 -8.8552 -1.0708 42 1 3.2284 -10.3044 -0.7107 43 1 2.4292 -8.7271 -0.9127 44 1 4.8372 -9.4778 2.5431 45 1 4.6352 -10.7428 1.3070 46 1 5.6037 -9.2937 0.9473 47 1 1.3533 -8.9856 1.3274 48 1 2.1526 -10.5629 1.5290 49 1 2.3551 -9.2979 2.7651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570529938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:00 Heat of formation + Delta-G solvation = 115.417360 kcal Electronic energy + Delta-G solvation = -30141.080434 eV Core-core repulsion = 26142.331507 eV Total energy + Delta-G solvation = -3998.748927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.60607 -41.30822 -38.89611 -38.55868 -37.20065 -34.71347 -33.97664 -33.29920 -32.47011 -30.61666 -28.61994 -28.54190 -28.01467 -26.90130 -26.59246 -25.60606 -23.97910 -22.88557 -21.91424 -21.83265 -20.47122 -18.87450 -18.57604 -18.51617 -17.76140 -17.57689 -16.89867 -16.37909 -15.72707 -15.46019 -15.39220 -15.22921 -15.12704 -15.00580 -14.61193 -14.34933 -14.09526 -13.88618 -13.70748 -13.48632 -13.46232 -13.26342 -13.22231 -12.85901 -12.84722 -12.79738 -12.67456 -12.63815 -12.46755 -12.31949 -12.13361 -12.11352 -11.97885 -11.87878 -11.79161 -11.61807 -11.49883 -11.40305 -11.29780 -10.62586 -9.89648 -8.90584 -7.70037 -5.14777 -0.17166 0.25278 0.62812 1.49969 1.51309 1.55078 1.61989 1.85500 2.54509 2.69448 2.91235 3.39059 3.48474 3.51828 3.62014 3.63045 3.77694 3.85032 3.96128 4.08722 4.24391 4.35981 4.41524 4.46598 4.49496 4.52193 4.58566 4.60211 4.73321 4.73455 4.79567 4.82253 4.87787 5.00525 5.02344 5.09896 5.10791 5.11877 5.17759 5.18520 5.23506 5.41659 5.43155 5.54018 5.64984 5.82484 6.26359 6.31664 6.71716 7.04974 7.19083 7.89113 8.32602 9.30016 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002578 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.953916 B =10857.819936 C =11558.573983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.619 5.619 3 C -0.237 4.237 4 H 0.089 0.911 5 C -0.067 4.067 6 N -0.952 5.952 7 Si 0.972 3.028 8 H -0.259 1.259 9 H -0.300 1.300 10 H -0.294 1.294 11 C 0.152 3.848 12 C 0.127 3.873 13 H 0.050 0.950 14 C -0.104 4.104 15 C -0.121 4.121 16 C 0.093 3.907 17 N -0.587 5.587 18 C 0.619 3.381 19 O -0.549 6.549 20 C 0.122 3.878 21 N -0.259 5.259 22 N -0.056 5.056 23 N -0.109 5.109 24 C 0.159 3.841 25 C -0.158 4.158 26 C -0.148 4.148 27 C -0.158 4.158 28 N -0.260 5.260 29 H 0.012 0.988 30 H 0.005 0.995 31 H 0.023 0.977 32 H 0.242 0.758 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.130 0.870 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.127 0.873 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.130 0.870 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 -27.851 6.015 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.343 5.343 3 C -0.367 4.367 4 H 0.107 0.893 5 C -0.259 4.259 6 N -0.602 5.602 7 Si 0.801 3.199 8 H -0.182 1.182 9 H -0.227 1.227 10 H -0.221 1.221 11 C 0.024 3.976 12 C 0.022 3.978 13 H 0.068 0.932 14 C -0.142 4.142 15 C -0.159 4.159 16 C -0.028 4.028 17 N -0.319 5.319 18 C 0.402 3.598 19 O -0.424 6.424 20 C -0.161 4.161 21 N -0.134 5.134 22 N -0.048 5.048 23 N -0.025 5.025 24 C 0.081 3.919 25 C -0.217 4.217 26 C -0.206 4.206 27 C -0.216 4.216 28 N -0.114 5.114 29 H 0.031 0.969 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.146 0.854 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.148 0.852 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.817 -28.180 5.860 31.508 hybrid contribution -0.759 1.664 -0.290 1.852 sum 12.059 -26.516 5.570 29.657 Atomic orbital electron populations 1.20694 0.82384 0.93057 0.99422 1.44196 1.02246 1.01485 1.86409 1.19706 0.91485 0.83828 1.41653 0.89330 1.25696 0.96506 1.01126 1.02612 1.70464 1.06773 1.24734 1.58218 0.85095 0.78675 0.79660 0.76461 1.18249 1.22732 1.22088 1.21071 0.95607 0.86913 0.94009 1.22432 0.96532 0.79652 0.99197 0.93210 1.22476 0.95882 0.96275 0.99535 1.22856 1.01765 0.93364 0.97893 1.22842 0.81262 1.00629 0.98063 1.48419 1.17776 1.05617 1.60122 1.15966 0.83799 0.80709 0.79353 1.90835 1.21157 1.85919 1.44458 1.24906 0.92879 0.94394 1.03970 1.76131 1.13247 1.06153 1.17821 1.78782 1.12470 1.00579 1.12998 1.51313 1.07258 1.11432 1.32547 1.22232 1.01739 0.67727 1.00228 1.22314 1.03081 1.06282 0.89981 1.22175 0.93324 1.02584 1.02538 1.22311 0.94456 1.04825 1.00024 1.74973 1.18846 0.98067 1.19558 0.96903 0.97671 0.95816 0.94773 0.94374 0.93434 0.90639 0.90955 0.90173 0.86873 0.87719 0.90100 0.91901 0.85163 0.92147 0.90991 0.85441 0.91052 0.92137 0.85177 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.54 8.99 127.77 1.15 11.69 16 2 N -0.62 -32.90 2.91 -726.91 -2.12 -35.02 16 3 C -0.24 -12.90 8.72 84.03 0.73 -12.17 16 4 H 0.09 4.50 6.95 -2.91 -0.02 4.48 16 5 C -0.07 -3.79 5.44 84.86 0.46 -3.33 16 6 N -0.95 -57.81 9.46 21.65 0.20 -57.61 16 7 Si 0.97 45.23 29.56 68.60 2.03 47.26 16 8 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 9 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 C 0.15 6.88 5.19 86.38 0.45 7.33 16 12 C 0.13 4.92 3.13 45.34 0.14 5.06 16 13 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.10 -3.39 5.49 31.78 0.17 -3.22 16 15 C -0.12 -2.82 7.09 31.99 0.23 -2.59 16 16 C 0.09 2.39 6.32 86.86 0.55 2.94 16 17 N -0.59 -19.95 3.06 -791.25 -2.42 -22.38 16 18 C 0.62 23.12 7.68 86.83 0.67 23.79 16 19 O -0.55 -24.62 15.89 -3.83 -0.06 -24.68 16 20 C 0.12 3.89 7.96 137.15 1.09 4.99 16 21 N -0.26 -7.19 9.60 -52.37 -0.50 -7.69 16 22 N -0.06 -1.34 12.21 37.02 0.45 -0.88 16 23 N -0.11 -2.37 3.72 -152.25 -0.57 -2.93 16 24 C 0.16 1.83 1.30 3.60 0.00 1.84 16 25 C -0.16 -1.46 8.66 71.98 0.62 -0.84 16 26 C -0.15 -0.89 7.90 71.98 0.57 -0.32 16 27 C -0.16 -1.42 8.66 71.98 0.62 -0.80 16 28 N -0.26 -7.61 11.85 -52.32 -0.62 -8.23 16 29 H 0.01 0.76 7.17 -2.39 -0.02 0.74 16 30 H 0.00 0.25 7.77 -2.39 -0.02 0.23 16 31 H 0.02 1.39 6.91 -2.38 -0.02 1.38 16 32 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.04 1.86 6.26 -2.39 -0.01 1.84 16 34 H 0.05 2.08 7.90 -2.38 -0.02 2.06 16 35 H 0.07 2.57 6.68 -2.39 -0.02 2.55 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.10 2.52 5.92 -2.39 -0.01 2.50 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.13 -0.14 8.14 -2.38 -0.02 -0.16 16 46 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -75.64 389.98 4.80 -70.84 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.94 Total: 6.97 kcal Atomic # 6 Polarization: 26.89 SS G_CDS: 7.46 Total: 34.35 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -5.57 Total: -134.74 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.64 4.80 -70.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570529938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.256 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds