Wall clock time and date at job start Tue Mar 31 2020 19:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48498 * 109.46857 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47188 * 299.99695 * 3 2 1 6 6 H 1.48497 * 109.47115 * 59.99817 * 3 2 1 7 7 C 1.37875 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00427 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99782 * 170.00294 * 10 9 7 12 12 C 1.53240 * 109.33959 * 187.25815 * 11 10 9 13 13 N 1.47082 * 108.51749 * 306.16187 * 12 11 10 14 14 C 1.34777 * 120.88357 * 231.18595 * 13 12 11 15 15 O 1.21593 * 119.99811 * 183.75521 * 14 13 12 16 16 C 1.47520 * 120.00055 * 3.75946 * 14 13 12 17 17 C 1.36596 * 125.77284 * 173.27963 * 16 14 13 18 18 N 1.34819 * 106.84169 * 179.97438 * 17 16 14 19 19 C 1.46493 * 126.59742 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47507 * 124.99724 * 19 18 17 21 21 C 1.52994 * 109.47560 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47782 * 180.02562 * 21 20 19 23 23 N 1.46897 * 109.47475 * 179.97438 * 22 21 20 24 24 N 1.40215 * 106.80658 * 0.02562 * 18 17 16 25 25 N 1.28760 * 108.37004 * 359.97438 * 24 18 17 26 26 C 1.47077 * 118.23256 * 51.46584 * 13 12 11 27 27 C 1.46896 * 111.00525 * 294.30065 * 10 9 7 28 28 H 0.96997 * 120.00408 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46644 * 59.99862 * 9 7 2 30 30 H 1.08998 * 109.47050 * 300.00460 * 9 7 2 31 31 H 1.08992 * 109.49818 * 67.29211 * 11 10 9 32 32 H 1.09006 * 109.51100 * 307.22573 * 11 10 9 33 33 H 1.09002 * 109.62772 * 186.45683 * 12 11 10 34 34 H 1.08995 * 109.63431 * 65.87760 * 12 11 10 35 35 H 1.07995 * 126.57902 * 359.97438 * 17 16 14 36 36 H 1.09003 * 109.47168 * 245.00308 * 19 18 17 37 37 H 1.09005 * 109.46721 * 4.99828 * 19 18 17 38 38 H 1.09003 * 109.47384 * 300.00452 * 20 19 18 39 39 H 1.09005 * 109.47045 * 60.00303 * 20 19 18 40 40 H 1.09008 * 109.47237 * 300.00135 * 21 20 19 41 41 H 1.09001 * 109.47410 * 59.99970 * 21 20 19 42 42 H 1.09003 * 109.47096 * 300.00134 * 22 21 20 43 43 H 1.09001 * 109.46849 * 59.99410 * 22 21 20 44 44 H 1.00893 * 111.00089 * 56.04549 * 23 22 21 45 45 H 1.00901 * 111.00070 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.63687 * 68.25104 * 26 13 12 47 47 H 1.09003 * 109.62505 * 188.82938 * 26 13 12 48 48 H 1.09003 * 109.49463 * 292.71245 * 27 10 9 49 49 H 1.09007 * 109.48931 * 52.78421 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5213 -4.8935 0.2386 12 6 2.5639 -6.0031 0.4115 13 7 3.4617 -5.9862 -0.7534 14 6 3.7121 -7.1123 -1.4502 15 8 4.5094 -7.0946 -2.3682 16 6 3.0190 -8.3663 -1.0994 17 6 3.0829 -9.5371 -1.8002 18 7 2.3109 -10.4272 -1.1450 19 6 2.0725 -11.8221 -1.5237 20 6 2.4316 -12.7374 -0.3516 21 6 2.1833 -14.1942 -0.7473 22 6 2.5418 -15.1096 0.4251 23 7 2.3028 -16.5083 0.0452 24 7 1.7799 -9.7609 -0.0314 25 7 2.2179 -8.5501 -0.0359 26 6 4.0839 -4.7089 -1.1338 27 6 2.9769 -3.6491 -1.2493 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 0.8798 -5.1264 -0.6111 32 1 0.9158 -4.8194 1.1420 33 1 2.0634 -6.9694 0.4740 34 1 3.1395 -5.8265 1.3201 35 1 3.6442 -9.7155 -2.7054 36 1 1.0212 -11.9546 -1.7795 37 1 2.6907 -12.0753 -2.3851 38 1 3.4829 -12.6049 -0.0959 39 1 1.8135 -12.4841 0.5098 40 1 1.1321 -14.3272 -1.0033 41 1 2.8017 -14.4473 -1.6085 42 1 3.5929 -14.9769 0.6814 43 1 1.9231 -14.8564 1.2860 44 1 2.8158 -16.7490 -0.7895 45 1 2.5319 -17.1332 0.8036 46 1 4.8028 -4.4101 -0.3709 47 1 4.5887 -4.8191 -2.0935 48 1 2.3150 -3.8992 -2.0785 49 1 3.4272 -2.6721 -1.4250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:26 Heat of formation + Delta-G solvation = 78.414575 kcal Electronic energy + Delta-G solvation = -28517.763485 eV Core-core repulsion = 24517.409996 eV Total energy + Delta-G solvation = -4000.353488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.47534 -39.61747 -37.41571 -37.30179 -35.27902 -34.30454 -32.52790 -32.29830 -31.34488 -30.35985 -28.41373 -27.87083 -25.56750 -24.37480 -23.84245 -22.82618 -22.10271 -21.94778 -21.59773 -20.51760 -19.05482 -17.57503 -16.84755 -16.55480 -16.35216 -16.29027 -16.04090 -15.63613 -15.28254 -14.97227 -14.69263 -14.63059 -14.26994 -14.24718 -13.79802 -13.66096 -13.49871 -13.32663 -12.80151 -12.65310 -12.48975 -12.33566 -12.03785 -12.00666 -11.92047 -11.40668 -11.32717 -11.16516 -10.81809 -10.74020 -10.65259 -10.61730 -10.48755 -10.31638 -9.92294 -9.62281 -9.48213 -9.35227 -9.15795 -8.44384 -8.34301 -7.22228 -6.01050 -4.02519 0.90991 1.58181 1.70655 3.11296 3.31650 3.32838 3.40264 3.45142 3.68113 3.93126 4.02593 4.14755 4.34925 4.43652 4.46869 4.52039 4.68471 4.73970 4.78312 4.88337 4.94476 5.03851 5.13525 5.25714 5.30063 5.35367 5.51799 5.54148 5.60358 5.62662 5.77451 5.85584 5.95426 6.05834 6.06987 6.39307 6.46135 6.47465 6.55468 6.62413 6.77255 6.83224 7.31229 7.35858 7.55206 7.77856 7.81941 8.09552 8.20148 8.25355 8.55719 9.05304 9.61859 11.09834 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032021 B = 0.001817 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.210754 B =15404.948083 C =15938.807521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.044 3.956 12 C 0.078 3.922 13 N -0.588 5.588 14 C 0.598 3.402 15 O -0.552 6.552 16 C -0.089 4.089 17 C 0.090 3.910 18 N -0.360 5.360 19 C 0.122 3.878 20 C -0.133 4.133 21 C -0.115 4.115 22 C 0.060 3.940 23 N -0.854 5.854 24 N -0.064 5.064 25 N -0.202 5.202 26 C 0.115 3.885 27 C 0.052 3.948 28 H 0.260 0.740 29 H -0.010 1.010 30 H 0.032 0.968 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.204 0.796 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.340 0.660 45 H 0.344 0.656 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.024 0.976 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 -31.412 -3.032 32.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.086 4.086 12 C -0.046 4.046 13 N -0.319 5.319 14 C 0.384 3.616 15 O -0.430 6.430 16 C -0.228 4.228 17 C -0.066 4.066 18 N -0.145 5.145 19 C 0.002 3.998 20 C -0.172 4.172 21 C -0.154 4.154 22 C -0.071 4.071 23 N -0.383 5.383 24 N -0.043 5.043 25 N -0.074 5.074 26 C -0.007 4.007 27 C -0.077 4.077 28 H 0.070 0.930 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.221 0.779 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.042 0.958 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.891 -31.145 -1.983 31.589 hybrid contribution 1.303 0.781 -1.320 2.013 sum 6.194 -30.363 -3.303 31.164 Atomic orbital electron populations 1.69970 1.06084 1.26652 1.51092 1.24994 0.94853 0.99334 0.95446 0.86444 0.80103 0.83432 0.77457 1.19610 1.21168 1.21051 1.21202 0.93543 0.89899 1.49931 0.91728 1.19729 0.90056 0.87287 0.96165 1.62092 1.28004 1.02796 1.33280 1.22379 0.95029 0.90524 1.00661 1.22953 0.91983 1.02645 0.86990 1.48049 1.45930 1.07960 1.29926 1.16813 0.81223 0.81640 0.81935 1.90769 1.36128 1.85033 1.31058 1.21533 1.07127 0.96938 0.97234 1.23339 0.95123 0.88824 0.99326 1.50514 1.32867 1.11586 1.19570 1.22086 1.04282 0.74510 0.98971 1.21850 1.03249 0.93913 0.98149 1.21490 1.03130 0.92510 0.98264 1.21777 0.98872 0.88331 0.98115 1.58693 1.66188 1.03652 1.09791 1.82010 1.19142 0.99587 1.03607 1.74263 1.07798 1.08260 1.17124 1.22026 0.95903 0.81392 1.01413 1.22410 0.95072 0.98982 0.91223 0.93002 0.99187 0.95016 0.95860 0.90149 0.84816 0.91053 0.77918 0.88124 0.87694 0.90976 0.89659 0.90382 0.91657 0.95395 0.90651 0.84751 0.84346 0.90661 0.89363 0.95798 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 8 H 0.06 1.78 7.13 -52.48 -0.37 1.41 16 9 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 10 N -0.54 -11.77 4.62 -235.47 -1.09 -12.85 16 11 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 12 C 0.08 1.27 6.44 -3.60 -0.02 1.24 16 13 N -0.59 -9.87 3.00 -173.42 -0.52 -10.39 16 14 C 0.60 9.63 7.70 -12.48 -0.10 9.53 16 15 O -0.55 -9.76 16.34 5.28 0.09 -9.67 16 16 C -0.09 -1.20 6.77 -83.55 -0.57 -1.77 16 17 C 0.09 0.87 11.28 -16.83 -0.19 0.68 16 18 N -0.36 -3.08 3.69 -61.07 -0.23 -3.31 16 19 C 0.12 0.51 6.54 -4.05 -0.03 0.48 16 20 C -0.13 -0.54 5.42 -26.74 -0.14 -0.69 16 21 C -0.12 -0.36 5.47 -26.73 -0.15 -0.51 16 22 C 0.06 0.24 6.79 -3.83 -0.03 0.21 16 23 N -0.85 -3.32 9.62 -10.37 -0.10 -3.42 16 24 N -0.06 -0.77 13.65 60.35 0.82 0.05 16 25 N -0.20 -2.79 8.66 32.85 0.28 -2.51 16 26 C 0.11 1.97 6.62 -3.37 -0.02 1.95 16 27 C 0.05 1.05 5.47 -3.47 -0.02 1.03 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 30 H 0.03 0.89 7.97 -51.93 -0.41 0.47 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.47 7.99 -51.93 -0.41 1.06 16 33 H 0.14 2.07 3.74 -118.60 -0.44 1.62 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.16 8.08 -51.93 -0.42 -0.26 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 41 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 42 H 0.03 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.34 0.90 8.99 -39.30 -0.35 0.54 16 45 H 0.34 0.96 9.08 -39.29 -0.36 0.60 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.09 1.46 7.08 -51.93 -0.37 1.09 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -34.49 397.22 -8.85 -43.34 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -8.12 Total: -2.74 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.69 Total: 4.95 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.09 Total: -58.54 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.49 -8.85 -43.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.752 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds